Wall clock time and date at job start Mon Mar 30 2020 02:17:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.47073 * 2 1 4 4 H 1.08994 * 109.48415 * 305.02252 * 3 2 1 5 5 O 1.42902 * 109.47962 * 65.04682 * 3 2 1 6 6 C 1.42904 * 114.09961 * 181.12645 * 5 3 2 7 7 C 1.53093 * 109.42351 * 298.86177 * 6 5 3 8 8 C 1.53176 * 109.16348 * 57.60111 * 7 6 5 9 9 C 1.53094 * 109.47753 * 184.99978 * 3 2 1 10 10 H 1.08998 * 109.57480 * 302.34547 * 9 3 2 11 11 C 1.52991 * 109.52438 * 62.50816 * 9 3 2 12 12 C 1.50707 * 109.47394 * 184.68320 * 11 9 3 13 13 H 1.07997 * 119.99716 * 359.97438 * 12 11 9 14 14 C 1.37872 * 120.00085 * 179.97438 * 12 11 9 15 15 N 1.31512 * 120.00238 * 359.97438 * 14 12 11 16 16 Si 1.86805 * 119.99932 * 179.97438 * 14 12 11 17 17 H 1.48500 * 109.46807 * 90.00079 * 16 14 12 18 18 H 1.48495 * 109.47167 * 209.99978 * 16 14 12 19 19 H 1.48499 * 109.46831 * 330.00365 * 16 14 12 20 20 H 1.09001 * 109.47309 * 299.99994 * 1 2 3 21 21 H 1.09002 * 109.47175 * 60.00035 * 1 2 3 22 22 H 1.08996 * 109.47551 * 179.97438 * 1 2 3 23 23 H 1.09000 * 109.47025 * 240.00472 * 2 1 3 24 24 H 1.08997 * 109.47430 * 120.00388 * 2 1 3 25 25 H 1.09002 * 109.48241 * 178.87096 * 6 5 3 26 26 H 1.08999 * 109.47648 * 58.84690 * 6 5 3 27 27 H 1.09004 * 109.52115 * 177.50898 * 7 6 5 28 28 H 1.09001 * 109.52113 * 297.69780 * 7 6 5 29 29 H 1.09002 * 109.54544 * 62.88840 * 8 7 6 30 30 H 1.09000 * 109.54423 * 183.06483 * 8 7 6 31 31 H 1.09002 * 109.47094 * 304.68259 * 11 9 3 32 32 H 1.09000 * 109.47831 * 64.67940 * 11 9 3 33 33 H 0.97000 * 120.00074 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6052 1.9819 -0.8415 5 8 1.6630 2.0813 1.2215 6 6 2.0699 3.4479 1.3151 7 6 3.5969 3.5306 1.2421 8 6 4.0733 2.8885 -0.0645 9 6 3.5657 1.4446 -0.1258 10 1 4.0004 0.8706 0.6926 11 6 3.9695 0.8170 -1.4614 12 6 5.4713 0.7145 -1.5347 13 1 6.0771 1.0625 -0.7112 14 6 6.0717 0.1764 -2.6531 15 7 5.3340 -0.2479 -3.6557 16 14 7.9332 0.0499 -2.7442 17 1 8.3685 -1.2561 -2.1873 18 1 8.3677 0.1536 -4.1604 19 1 8.5433 1.1517 -1.9574 20 1 -0.3634 0.5138 0.8900 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3634 -1.0276 -0.0005 23 1 1.8933 -0.5138 -0.8900 24 1 1.8933 -0.5139 0.8899 25 1 1.7281 3.8649 2.2624 26 1 1.6355 4.0138 0.4910 27 1 3.9068 4.5753 1.2689 28 1 4.0313 2.9990 2.0887 29 1 3.6791 3.4499 -0.9116 30 1 5.1628 2.8951 -0.0979 31 1 3.5330 -0.1785 -1.5418 32 1 3.6075 1.4395 -2.2796 33 1 5.7564 -0.6269 -4.4424 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259651574.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:07 Heat of formation + Delta-G solvation = -82.021493 kcal Electronic energy + Delta-G solvation = -13242.564892 eV Core-core repulsion = 11073.940116 eV Total energy + Delta-G solvation = -2168.624777 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.09444 -34.42795 -33.51729 -32.26997 -30.05405 -26.84695 -24.91415 -23.46708 -21.27746 -20.62280 -19.23760 -16.58839 -15.63847 -15.34661 -14.46469 -14.12136 -13.72043 -13.29870 -13.25226 -12.81166 -12.11602 -12.03664 -11.54190 -11.24975 -11.13264 -10.82352 -10.74410 -10.57143 -10.42448 -10.26285 -9.91372 -9.50239 -9.36988 -9.06545 -8.55932 -8.32066 -5.99238 -4.00489 3.31791 3.38269 3.41238 4.27348 4.46679 5.27215 5.32424 5.38776 5.42909 5.52727 5.63727 5.67401 5.79344 5.97905 6.00606 6.15550 6.20747 6.31605 6.40878 6.49435 6.55277 6.64239 6.77430 6.94997 7.05492 7.08667 7.66749 7.76323 7.83804 8.00197 8.44358 9.05310 9.62926 11.12011 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.039484 B = 0.010216 C = 0.008504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 708.975255 B = 2740.273979 C = 3291.938985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.118 4.118 3 C 0.094 3.906 4 H 0.050 0.950 5 O -0.388 6.388 6 C 0.065 3.935 7 C -0.158 4.158 8 C -0.107 4.107 9 C -0.108 4.108 10 H 0.064 0.936 11 C 0.027 3.973 12 C -0.514 4.514 13 H 0.055 0.945 14 C 0.056 3.944 15 N -0.896 5.896 16 Si 0.889 3.111 17 H -0.281 1.281 18 H -0.287 1.287 19 H -0.275 1.275 20 H 0.055 0.945 21 H 0.048 0.952 22 H 0.048 0.952 23 H 0.088 0.912 24 H 0.064 0.936 25 H 0.082 0.918 26 H 0.042 0.958 27 H 0.061 0.939 28 H 0.064 0.936 29 H 0.054 0.946 30 H 0.072 0.928 31 H 0.023 0.977 32 H 0.015 0.985 33 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.220 4.644 7.184 10.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.155 4.155 3 C 0.037 3.963 4 H 0.068 0.932 5 O -0.307 6.307 6 C -0.012 4.012 7 C -0.195 4.195 8 C -0.144 4.144 9 C -0.127 4.127 10 H 0.082 0.918 11 C -0.010 4.010 12 C -0.552 4.552 13 H 0.073 0.927 14 C -0.145 4.145 15 N -0.535 5.535 16 Si 0.717 3.283 17 H -0.207 1.207 18 H -0.213 1.213 19 H -0.199 1.199 20 H 0.074 0.926 21 H 0.067 0.933 22 H 0.067 0.933 23 H 0.106 0.894 24 H 0.083 0.917 25 H 0.100 0.900 26 H 0.060 0.940 27 H 0.080 0.920 28 H 0.083 0.917 29 H 0.072 0.928 30 H 0.091 0.909 31 H 0.041 0.959 32 H 0.033 0.967 33 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -6.310 4.470 7.148 10.531 hybrid contribution 1.294 0.099 -0.387 1.355 sum -5.016 4.570 6.761 9.579 Atomic orbital electron populations 1.21721 0.96316 1.00800 1.01539 1.21624 0.95370 0.95128 1.03378 1.22283 0.95367 0.93178 0.85452 0.93201 1.87826 1.78761 1.24225 1.39905 1.22433 0.94279 0.83757 1.00707 1.22256 0.96582 1.00684 1.00023 1.21553 1.01864 0.95958 0.95046 1.21827 0.92882 0.96071 1.01898 0.91801 1.19173 0.96231 0.95718 0.89831 1.21225 0.92002 1.39998 1.02010 0.92674 1.25007 0.97950 0.95650 0.95852 1.69957 1.35003 1.41891 1.06682 0.86639 0.86091 0.78424 0.77128 1.20718 1.21289 1.19948 0.92624 0.93259 0.93308 0.89377 0.91710 0.90022 0.93951 0.91987 0.91674 0.92761 0.90888 0.95905 0.96690 0.93064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.16 9.81 37.16 0.36 -1.79 16 2 C -0.12 -2.06 5.48 -26.73 -0.15 -2.20 16 3 C 0.09 1.76 2.14 -26.68 -0.06 1.70 16 4 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 5 O -0.39 -6.85 9.94 -35.23 -0.35 -7.20 16 6 C 0.07 0.97 6.84 37.21 0.25 1.23 16 7 C -0.16 -2.45 6.14 -26.59 -0.16 -2.62 16 8 C -0.11 -2.04 5.06 -26.55 -0.13 -2.18 16 9 C -0.11 -2.27 1.84 -90.48 -0.17 -2.43 16 10 H 0.06 1.40 8.14 -51.93 -0.42 0.98 16 11 C 0.03 0.69 4.28 -27.88 -0.12 0.58 16 12 C -0.51 -14.31 8.45 -34.44 -0.29 -14.60 16 13 H 0.06 1.50 7.06 -52.49 -0.37 1.13 16 14 C 0.06 1.60 5.46 -17.82 -0.10 1.51 16 15 N -0.90 -26.71 13.29 55.43 0.74 -25.97 16 16 Si 0.89 21.65 29.54 -169.99 -5.02 16.63 16 17 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 18 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 19 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 20 H 0.05 0.81 7.82 -51.93 -0.41 0.40 16 21 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 22 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 23 H 0.09 1.66 6.17 -51.93 -0.32 1.34 16 24 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 25 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 26 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 28 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 29 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 30 H 0.07 1.49 7.06 -51.93 -0.37 1.12 16 31 H 0.02 0.61 6.18 -51.93 -0.32 0.29 16 32 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 LS Contribution 261.75 15.07 3.94 3.94 Total: -1.00 -29.31 261.75 -6.82 -36.13 By element: Atomic # 1 Polarization: 2.86 SS G_CDS: -5.57 Total: -2.71 kcal Atomic # 6 Polarization: -20.26 SS G_CDS: -0.56 Total: -20.82 kcal Atomic # 7 Polarization: -26.71 SS G_CDS: 0.74 Total: -25.97 kcal Atomic # 8 Polarization: -6.85 SS G_CDS: -0.35 Total: -7.20 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Total LS contribution 3.94 Total: 3.94 kcal Total: -29.31 -6.82 -36.13 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259651574.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.896 kcal (2) G-P(sol) polarization free energy of solvation -29.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.126 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds