Wall clock time and date at job start Mon Mar 30 2020 02:17:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.47073 * 2 1 4 4 H 1.08994 * 109.48415 * 305.02252 * 3 2 1 5 5 O 1.42902 * 109.47962 * 65.04682 * 3 2 1 6 6 C 1.42904 * 114.09961 * 181.12645 * 5 3 2 7 7 C 1.53093 * 109.42351 * 298.86177 * 6 5 3 8 8 C 1.53176 * 109.16348 * 57.60111 * 7 6 5 9 9 C 1.53094 * 109.47753 * 184.99978 * 3 2 1 10 10 H 1.08998 * 109.57480 * 302.34547 * 9 3 2 11 11 C 1.52991 * 109.52438 * 62.50816 * 9 3 2 12 12 C 1.50707 * 109.47394 * 184.68320 * 11 9 3 13 13 H 1.07997 * 119.99716 * 359.97438 * 12 11 9 14 14 C 1.37872 * 120.00085 * 179.97438 * 12 11 9 15 15 N 1.31512 * 120.00238 * 359.97438 * 14 12 11 16 16 Si 1.86805 * 119.99932 * 179.97438 * 14 12 11 17 17 H 1.48500 * 109.46807 * 90.00079 * 16 14 12 18 18 H 1.48495 * 109.47167 * 209.99978 * 16 14 12 19 19 H 1.48499 * 109.46831 * 330.00365 * 16 14 12 20 20 H 1.09001 * 109.47309 * 299.99994 * 1 2 3 21 21 H 1.09002 * 109.47175 * 60.00035 * 1 2 3 22 22 H 1.08996 * 109.47551 * 179.97438 * 1 2 3 23 23 H 1.09000 * 109.47025 * 240.00472 * 2 1 3 24 24 H 1.08997 * 109.47430 * 120.00388 * 2 1 3 25 25 H 1.09002 * 109.48241 * 178.87096 * 6 5 3 26 26 H 1.08999 * 109.47648 * 58.84690 * 6 5 3 27 27 H 1.09004 * 109.52115 * 177.50898 * 7 6 5 28 28 H 1.09001 * 109.52113 * 297.69780 * 7 6 5 29 29 H 1.09002 * 109.54544 * 62.88840 * 8 7 6 30 30 H 1.09000 * 109.54423 * 183.06483 * 8 7 6 31 31 H 1.09002 * 109.47094 * 304.68259 * 11 9 3 32 32 H 1.09000 * 109.47831 * 64.67940 * 11 9 3 33 33 H 0.97000 * 120.00074 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6052 1.9819 -0.8415 5 8 1.6630 2.0813 1.2215 6 6 2.0699 3.4479 1.3151 7 6 3.5969 3.5306 1.2421 8 6 4.0733 2.8885 -0.0645 9 6 3.5657 1.4446 -0.1258 10 1 4.0004 0.8706 0.6926 11 6 3.9695 0.8170 -1.4614 12 6 5.4713 0.7145 -1.5347 13 1 6.0771 1.0625 -0.7112 14 6 6.0717 0.1764 -2.6531 15 7 5.3340 -0.2479 -3.6557 16 14 7.9332 0.0499 -2.7442 17 1 8.3685 -1.2561 -2.1873 18 1 8.3677 0.1536 -4.1604 19 1 8.5433 1.1517 -1.9574 20 1 -0.3634 0.5138 0.8900 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3634 -1.0276 -0.0005 23 1 1.8933 -0.5138 -0.8900 24 1 1.8933 -0.5139 0.8899 25 1 1.7281 3.8649 2.2624 26 1 1.6355 4.0138 0.4910 27 1 3.9068 4.5753 1.2689 28 1 4.0313 2.9990 2.0887 29 1 3.6791 3.4499 -0.9116 30 1 5.1628 2.8951 -0.0979 31 1 3.5330 -0.1785 -1.5418 32 1 3.6075 1.4395 -2.2796 33 1 5.7564 -0.6269 -4.4424 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259651574.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:07 Heat of formation + Delta-G solvation = -99.073112 kcal Electronic energy + Delta-G solvation = -13243.304306 eV Core-core repulsion = 11073.940116 eV Total energy + Delta-G solvation = -2169.364190 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.55432 -36.17771 -34.88988 -34.21676 -31.57792 -28.69817 -26.32540 -25.25297 -22.88851 -22.03408 -20.84713 -18.62161 -17.16881 -16.83872 -16.35676 -15.58641 -15.21074 -14.88364 -14.60137 -14.14080 -14.07211 -13.72729 -13.24460 -12.82379 -12.67066 -12.54849 -12.42906 -12.03801 -12.00601 -11.82452 -11.54088 -11.32636 -10.97910 -10.92958 -10.50046 -10.12170 -8.18376 -6.27383 1.38843 1.39445 1.50262 2.40586 2.93884 3.14689 3.84706 4.01580 4.06869 4.12532 4.26394 4.36485 4.48848 4.58796 4.66252 4.82791 4.89628 4.94525 5.00865 5.11200 5.15413 5.24202 5.25707 5.35488 5.41732 5.46610 5.58068 5.78454 5.86133 6.26577 6.40870 6.87384 7.40451 8.93181 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.039484 B = 0.010216 C = 0.008504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 708.975255 B = 2740.273979 C = 3291.938985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.119 4.119 3 C 0.103 3.897 4 H 0.046 0.954 5 O -0.392 6.392 6 C 0.058 3.942 7 C -0.149 4.149 8 C -0.107 4.107 9 C -0.102 4.102 10 H 0.052 0.948 11 C 0.035 3.965 12 C -0.530 4.530 13 H 0.057 0.943 14 C 0.000 4.000 15 N -0.932 5.932 16 Si 0.959 3.041 17 H -0.274 1.274 18 H -0.283 1.283 19 H -0.265 1.265 20 H 0.061 0.939 21 H 0.051 0.949 22 H 0.064 0.936 23 H 0.065 0.935 24 H 0.063 0.937 25 H 0.116 0.884 26 H 0.051 0.949 27 H 0.090 0.910 28 H 0.064 0.936 29 H 0.049 0.951 30 H 0.054 0.946 31 H 0.002 0.998 32 H -0.012 1.012 33 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.205 5.561 8.463 11.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.157 4.157 3 C 0.045 3.955 4 H 0.064 0.936 5 O -0.312 6.312 6 C -0.019 4.019 7 C -0.186 4.186 8 C -0.145 4.145 9 C -0.121 4.121 10 H 0.070 0.930 11 C -0.002 4.002 12 C -0.568 4.568 13 H 0.075 0.925 14 C -0.197 4.197 15 N -0.573 5.573 16 Si 0.783 3.217 17 H -0.200 1.200 18 H -0.208 1.208 19 H -0.189 1.189 20 H 0.080 0.920 21 H 0.070 0.930 22 H 0.083 0.917 23 H 0.084 0.916 24 H 0.082 0.918 25 H 0.134 0.866 26 H 0.069 0.931 27 H 0.109 0.891 28 H 0.083 0.917 29 H 0.068 0.932 30 H 0.073 0.927 31 H 0.021 0.979 32 H 0.007 0.993 33 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -6.300 5.398 8.444 11.837 hybrid contribution 1.276 -0.166 -0.783 1.507 sum -5.023 5.231 7.661 10.549 Atomic orbital electron populations 1.21655 0.93833 1.02099 1.01966 1.21590 0.97576 0.94272 1.02211 1.22069 0.93304 0.94024 0.86077 0.93608 1.87822 1.78674 1.25803 1.38876 1.22732 0.93712 0.82476 1.02942 1.22201 0.97147 1.01930 0.97366 1.21507 1.00679 0.94939 0.97347 1.21684 0.95014 0.96845 0.98573 0.92980 1.19024 0.95142 0.94480 0.91543 1.21600 0.93320 1.39781 1.02137 0.92514 1.25901 1.03067 0.95258 0.95477 1.70086 1.37126 1.42734 1.07318 0.85543 0.79976 0.78795 0.77335 1.19959 1.20806 1.18914 0.91952 0.92970 0.91653 0.91615 0.91801 0.86623 0.93055 0.89138 0.91689 0.93246 0.92738 0.97939 0.99317 0.92896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.88 9.81 71.98 0.71 -3.18 16 2 C -0.12 -4.16 5.48 30.59 0.17 -4.00 16 3 C 0.10 3.79 2.14 30.63 0.07 3.86 16 4 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 5 O -0.39 -13.05 9.94 -148.98 -1.48 -14.53 16 6 C 0.06 1.54 6.84 72.01 0.49 2.03 16 7 C -0.15 -4.26 6.14 30.68 0.19 -4.07 16 8 C -0.11 -4.06 5.06 30.71 0.16 -3.90 16 9 C -0.10 -4.35 1.84 -10.70 -0.02 -4.37 16 10 H 0.05 2.31 8.14 -2.39 -0.02 2.29 16 11 C 0.04 1.85 4.28 29.85 0.13 1.98 16 12 C -0.53 -30.15 8.45 25.60 0.22 -29.93 16 13 H 0.06 3.13 7.06 -2.91 -0.02 3.11 16 14 C 0.00 0.03 5.46 84.65 0.46 0.49 16 15 N -0.93 -56.75 13.29 21.44 0.28 -56.46 16 16 Si 0.96 44.61 29.54 68.60 2.03 46.63 16 17 H -0.27 -12.38 7.11 99.48 0.71 -11.68 16 18 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 19 H -0.26 -11.81 7.11 99.48 0.71 -11.10 16 20 H 0.06 1.67 7.82 -2.39 -0.02 1.65 16 21 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 22 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 23 H 0.07 2.57 6.17 -2.39 -0.01 2.56 16 24 H 0.06 2.20 8.14 -2.39 -0.02 2.19 16 25 H 0.12 2.38 8.14 -2.39 -0.02 2.36 16 26 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 27 H 0.09 2.11 8.14 -2.39 -0.02 2.09 16 28 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 29 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 30 H 0.05 2.23 7.06 -2.39 -0.02 2.21 16 31 H 0.00 0.13 6.18 -2.39 -0.01 0.12 16 32 H -0.01 -0.66 8.14 -2.39 -0.02 -0.68 16 33 H 0.26 15.04 8.31 -92.71 -0.77 14.27 16 Total: -1.00 -62.96 261.75 4.44 -58.51 By element: Atomic # 1 Polarization: 5.88 SS G_CDS: 1.05 Total: 6.94 kcal Atomic # 6 Polarization: -43.65 SS G_CDS: 2.56 Total: -41.09 kcal Atomic # 7 Polarization: -56.75 SS G_CDS: 0.28 Total: -56.46 kcal Atomic # 8 Polarization: -13.05 SS G_CDS: -1.48 Total: -14.53 kcal Atomic # 14 Polarization: 44.61 SS G_CDS: 2.03 Total: 46.63 kcal Total: -62.96 4.44 -58.51 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259651574.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.561 kcal (2) G-P(sol) polarization free energy of solvation -62.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.513 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds