Wall clock time and date at job start Mon Mar 30 2020 02:17:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47257 * 2 1 4 4 H 1.08995 * 109.48222 * 54.97881 * 3 2 1 5 5 O 1.42903 * 109.48650 * 294.94728 * 3 2 1 6 6 C 1.42905 * 114.09669 * 178.85194 * 5 3 2 7 7 C 1.53098 * 109.41333 * 61.15792 * 6 5 3 8 8 C 1.53180 * 109.21618 * 302.42649 * 7 6 5 9 9 C 1.53092 * 109.48141 * 175.00363 * 3 2 1 10 10 H 1.09002 * 109.52421 * 57.62928 * 9 3 2 11 11 C 1.52999 * 109.52091 * 297.50772 * 9 3 2 12 12 C 1.50702 * 109.47525 * 175.12392 * 11 9 3 13 13 H 1.08002 * 119.99441 * 0.02562 * 12 11 9 14 14 C 1.37871 * 120.00075 * 180.02562 * 12 11 9 15 15 N 1.31514 * 120.00481 * 359.97438 * 14 12 11 16 16 Si 1.86803 * 119.99886 * 179.73007 * 14 12 11 17 17 H 1.48502 * 109.46964 * 270.27509 * 16 14 12 18 18 H 1.48505 * 109.47036 * 30.26897 * 16 14 12 19 19 H 1.48490 * 109.47395 * 150.27411 * 16 14 12 20 20 H 1.09000 * 109.47243 * 179.97438 * 1 2 3 21 21 H 1.08996 * 109.47100 * 300.00442 * 1 2 3 22 22 H 1.09001 * 109.46888 * 59.99974 * 1 2 3 23 23 H 1.09003 * 109.46835 * 240.00190 * 2 1 3 24 24 H 1.08996 * 109.47314 * 120.00088 * 2 1 3 25 25 H 1.08997 * 109.48461 * 181.13950 * 6 5 3 26 26 H 1.09002 * 109.48187 * 301.18033 * 6 5 3 27 27 H 1.09007 * 109.51963 * 62.29856 * 7 6 5 28 28 H 1.09005 * 109.52249 * 182.42172 * 7 6 5 29 29 H 1.09005 * 109.49614 * 297.05389 * 8 7 6 30 30 H 1.08994 * 109.60094 * 176.78050 * 8 7 6 31 31 H 1.09009 * 109.47378 * 55.12672 * 11 9 3 32 32 H 1.08998 * 109.47458 * 295.13133 * 11 9 3 33 33 H 0.97005 * 119.99656 * 359.72741 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6052 1.9818 0.8415 5 8 1.6632 2.0813 -1.2215 6 6 2.0699 3.4481 -1.3147 7 6 3.5969 3.5308 -1.2417 8 6 4.0748 2.8880 0.0640 9 6 3.5658 1.4446 0.1257 10 1 3.9995 0.8701 -0.6928 11 6 3.9696 0.8166 1.4612 12 6 5.4711 0.7097 1.5325 13 1 6.0768 1.0555 0.7079 14 6 6.0715 0.1705 2.6504 15 7 5.3340 -0.2501 3.6547 16 14 7.9324 0.0311 2.7356 17 1 8.3570 -1.2767 2.1748 18 1 8.5476 1.1302 1.9489 19 1 8.3718 0.1290 4.1506 20 1 -0.3634 -1.0277 -0.0005 21 1 -0.3633 0.5139 0.8899 22 1 -0.3633 0.5138 -0.8900 23 1 1.8933 -0.5138 -0.8900 24 1 1.8933 -0.5138 0.8899 25 1 1.7282 3.8653 -2.2619 26 1 1.6355 4.0137 -0.4903 27 1 4.0314 2.9994 -2.0885 28 1 3.9069 4.5755 -1.2693 29 1 3.6814 3.4498 0.9113 30 1 5.1642 2.8921 0.0963 31 1 3.5303 -0.1777 1.5428 32 1 3.6104 1.4407 2.2795 33 1 4.3677 -0.1773 3.6107 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259651575.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:09 Heat of formation + Delta-G solvation = -85.855680 kcal Electronic energy + Delta-G solvation = -13278.242341 eV Core-core repulsion = 11109.451302 eV Total energy + Delta-G solvation = -2168.791039 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.19224 -34.64799 -33.61041 -32.40629 -30.03516 -26.50998 -24.99768 -23.31715 -21.49286 -20.73884 -19.41535 -16.87663 -15.87261 -15.43515 -14.31570 -13.85294 -13.72503 -13.42866 -13.35854 -12.94320 -12.65244 -11.75450 -11.51938 -11.49629 -11.18167 -10.82342 -10.72520 -10.65285 -10.48296 -10.11752 -10.02964 -9.60426 -9.39682 -9.02779 -8.36624 -8.28114 -6.33579 -4.01863 3.44062 3.47252 3.62916 4.18854 4.55678 5.18301 5.26732 5.34999 5.41321 5.45946 5.55731 5.57809 5.71301 5.88944 5.91320 6.07211 6.11861 6.23554 6.31570 6.39773 6.45599 6.54137 6.66498 6.83196 6.92750 6.97697 7.40138 7.54256 7.69445 8.25055 8.49102 8.91512 9.69283 11.06815 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.039440 B = 0.010277 C = 0.008548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 709.763038 B = 2723.947036 C = 3274.668352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.117 4.117 3 C 0.093 3.907 4 H 0.049 0.951 5 O -0.386 6.386 6 C 0.065 3.935 7 C -0.157 4.157 8 C -0.106 4.106 9 C -0.101 4.101 10 H 0.065 0.935 11 C 0.014 3.986 12 C -0.595 4.595 13 H 0.049 0.951 14 C 0.013 3.987 15 N -0.915 5.915 16 Si 1.069 2.931 17 H -0.288 1.288 18 H -0.289 1.289 19 H -0.285 1.285 20 H 0.049 0.951 21 H 0.048 0.952 22 H 0.056 0.944 23 H 0.065 0.935 24 H 0.084 0.916 25 H 0.083 0.917 26 H 0.042 0.958 27 H 0.065 0.935 28 H 0.063 0.937 29 H 0.052 0.948 30 H 0.074 0.926 31 H 0.013 0.987 32 H 0.005 0.995 33 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.192 4.921 -7.737 11.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.155 4.155 3 C 0.036 3.964 4 H 0.067 0.933 5 O -0.306 6.306 6 C -0.012 4.012 7 C -0.195 4.195 8 C -0.143 4.143 9 C -0.120 4.120 10 H 0.083 0.917 11 C -0.023 4.023 12 C -0.633 4.633 13 H 0.067 0.933 14 C -0.190 4.190 15 N -0.552 5.552 16 Si 0.898 3.102 17 H -0.215 1.215 18 H -0.216 1.216 19 H -0.211 1.211 20 H 0.068 0.932 21 H 0.067 0.933 22 H 0.075 0.925 23 H 0.084 0.916 24 H 0.103 0.897 25 H 0.101 0.899 26 H 0.061 0.939 27 H 0.084 0.916 28 H 0.081 0.919 29 H 0.071 0.929 30 H 0.092 0.908 31 H 0.032 0.968 32 H 0.024 0.976 33 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -5.041 4.322 -6.920 9.590 hybrid contribution -1.030 0.734 -0.775 1.484 sum -6.072 5.055 -7.695 11.029 Atomic orbital electron populations 1.21720 0.96140 1.00896 1.01622 1.21614 0.95522 0.95085 1.03253 1.22286 0.95299 0.93200 0.85581 0.93285 1.87830 1.78752 1.24285 1.39718 1.22449 0.94283 0.83662 1.00812 1.22255 0.96555 1.00773 0.99942 1.21538 1.01975 0.95708 0.95109 1.21692 0.92843 0.96190 1.01259 0.91673 1.19300 0.97264 0.94916 0.90788 1.22048 0.91586 1.44675 1.04986 0.93275 1.25808 1.06871 0.93731 0.92605 1.70756 1.07517 1.44557 1.32352 0.83541 0.74476 0.76271 0.75933 1.21510 1.21558 1.21062 0.93213 0.93256 0.92499 0.91600 0.89726 0.89865 0.93926 0.91620 0.91851 0.92878 0.90750 0.96842 0.97647 0.92136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.13 9.81 37.16 0.36 -1.77 16 2 C -0.12 -2.04 5.48 -26.73 -0.15 -2.19 16 3 C 0.09 1.74 2.14 -26.68 -0.06 1.68 16 4 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 5 O -0.39 -6.82 9.94 -35.23 -0.35 -7.17 16 6 C 0.06 0.97 6.84 37.21 0.25 1.22 16 7 C -0.16 -2.46 6.13 -26.59 -0.16 -2.62 16 8 C -0.11 -2.05 5.07 -26.55 -0.13 -2.18 16 9 C -0.10 -2.14 1.83 -90.48 -0.17 -2.30 16 10 H 0.06 1.45 8.14 -51.93 -0.42 1.03 16 11 C 0.01 0.36 3.59 -27.88 -0.10 0.26 16 12 C -0.59 -16.79 8.45 -34.44 -0.29 -17.08 16 13 H 0.05 1.37 7.07 -52.49 -0.37 1.00 16 14 C 0.01 0.38 5.46 -17.82 -0.10 0.29 16 15 N -0.92 -28.07 13.65 55.43 0.76 -27.31 16 16 Si 1.07 25.53 29.90 -169.99 -5.08 20.44 16 17 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 18 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 19 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 20 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 21 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 22 H 0.06 0.82 7.83 -51.93 -0.41 0.41 16 23 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 24 H 0.08 1.57 6.16 -51.93 -0.32 1.25 16 25 H 0.08 1.04 8.14 -51.93 -0.42 0.61 16 26 H 0.04 0.61 8.14 -51.93 -0.42 0.18 16 27 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 28 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 29 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 30 H 0.07 1.55 7.07 -51.93 -0.37 1.19 16 31 H 0.01 0.35 6.04 -51.92 -0.31 0.04 16 32 H 0.01 0.14 8.00 -51.93 -0.42 -0.27 16 33 H 0.27 8.18 7.22 -40.82 -0.29 7.88 16 LS Contribution 260.45 15.07 3.92 3.92 Total: -1.00 -30.12 260.45 -6.80 -36.92 By element: Atomic # 1 Polarization: 3.40 SS G_CDS: -5.51 Total: -2.11 kcal Atomic # 6 Polarization: -24.16 SS G_CDS: -0.54 Total: -24.70 kcal Atomic # 7 Polarization: -28.07 SS G_CDS: 0.76 Total: -27.31 kcal Atomic # 8 Polarization: -6.82 SS G_CDS: -0.35 Total: -7.17 kcal Atomic # 14 Polarization: 25.53 SS G_CDS: -5.08 Total: 20.44 kcal Total LS contribution 3.92 Total: 3.92 kcal Total: -30.12 -6.80 -36.92 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259651575.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.932 kcal (2) G-P(sol) polarization free energy of solvation -30.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.924 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds