Wall clock time and date at job start Mon Mar 30 2020 02:17:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47257 * 2 1 4 4 H 1.08995 * 109.48222 * 54.97881 * 3 2 1 5 5 O 1.42903 * 109.48650 * 294.94728 * 3 2 1 6 6 C 1.42905 * 114.09669 * 178.85194 * 5 3 2 7 7 C 1.53098 * 109.41333 * 61.15792 * 6 5 3 8 8 C 1.53180 * 109.21618 * 302.42649 * 7 6 5 9 9 C 1.53092 * 109.48141 * 175.00363 * 3 2 1 10 10 H 1.09002 * 109.52421 * 57.62928 * 9 3 2 11 11 C 1.52999 * 109.52091 * 297.50772 * 9 3 2 12 12 C 1.50702 * 109.47525 * 175.12392 * 11 9 3 13 13 H 1.08002 * 119.99441 * 0.02562 * 12 11 9 14 14 C 1.37871 * 120.00075 * 180.02562 * 12 11 9 15 15 N 1.31514 * 120.00481 * 359.97438 * 14 12 11 16 16 Si 1.86803 * 119.99886 * 179.73007 * 14 12 11 17 17 H 1.48502 * 109.46964 * 270.27509 * 16 14 12 18 18 H 1.48505 * 109.47036 * 30.26897 * 16 14 12 19 19 H 1.48490 * 109.47395 * 150.27411 * 16 14 12 20 20 H 1.09000 * 109.47243 * 179.97438 * 1 2 3 21 21 H 1.08996 * 109.47100 * 300.00442 * 1 2 3 22 22 H 1.09001 * 109.46888 * 59.99974 * 1 2 3 23 23 H 1.09003 * 109.46835 * 240.00190 * 2 1 3 24 24 H 1.08996 * 109.47314 * 120.00088 * 2 1 3 25 25 H 1.08997 * 109.48461 * 181.13950 * 6 5 3 26 26 H 1.09002 * 109.48187 * 301.18033 * 6 5 3 27 27 H 1.09007 * 109.51963 * 62.29856 * 7 6 5 28 28 H 1.09005 * 109.52249 * 182.42172 * 7 6 5 29 29 H 1.09005 * 109.49614 * 297.05389 * 8 7 6 30 30 H 1.08994 * 109.60094 * 176.78050 * 8 7 6 31 31 H 1.09009 * 109.47378 * 55.12672 * 11 9 3 32 32 H 1.08998 * 109.47458 * 295.13133 * 11 9 3 33 33 H 0.97005 * 119.99656 * 359.72741 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6052 1.9818 0.8415 5 8 1.6632 2.0813 -1.2215 6 6 2.0699 3.4481 -1.3147 7 6 3.5969 3.5308 -1.2417 8 6 4.0748 2.8880 0.0640 9 6 3.5658 1.4446 0.1257 10 1 3.9995 0.8701 -0.6928 11 6 3.9696 0.8166 1.4612 12 6 5.4711 0.7097 1.5325 13 1 6.0768 1.0555 0.7079 14 6 6.0715 0.1705 2.6504 15 7 5.3340 -0.2501 3.6547 16 14 7.9324 0.0311 2.7356 17 1 8.3570 -1.2767 2.1748 18 1 8.5476 1.1302 1.9489 19 1 8.3718 0.1290 4.1506 20 1 -0.3634 -1.0277 -0.0005 21 1 -0.3633 0.5139 0.8899 22 1 -0.3633 0.5138 -0.8900 23 1 1.8933 -0.5138 -0.8900 24 1 1.8933 -0.5138 0.8899 25 1 1.7282 3.8653 -2.2619 26 1 1.6355 4.0137 -0.4903 27 1 4.0314 2.9994 -2.0885 28 1 3.9069 4.5755 -1.2693 29 1 3.6814 3.4498 0.9113 30 1 5.1642 2.8921 0.0963 31 1 3.5303 -0.1777 1.5428 32 1 3.6104 1.4407 2.2795 33 1 4.3677 -0.1773 3.6107 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259651575.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:09 Heat of formation + Delta-G solvation = -103.671267 kcal Electronic energy + Delta-G solvation = -13279.014883 eV Core-core repulsion = 11109.451302 eV Total energy + Delta-G solvation = -2169.563581 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.66023 -36.45971 -34.97971 -34.32043 -31.54535 -28.36396 -26.41567 -25.20222 -23.13051 -22.14471 -21.01337 -18.98123 -17.34120 -16.86329 -15.79569 -15.67113 -15.36494 -15.03717 -14.70546 -14.58320 -14.17704 -13.50314 -13.32778 -13.05570 -12.63663 -12.52097 -12.28395 -12.09756 -11.95781 -11.88116 -11.67719 -11.16562 -11.09765 -10.82171 -10.51440 -10.14364 -8.66679 -6.35731 1.50415 1.59364 1.76828 2.55493 2.85184 3.16933 3.74106 3.91284 3.96146 4.04425 4.16282 4.27949 4.39240 4.49305 4.57714 4.72110 4.79214 4.83003 4.90665 4.99459 5.06846 5.09899 5.16639 5.19717 5.32252 5.35559 5.47526 5.58414 6.02768 6.20261 6.30790 6.61308 7.44227 8.74016 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.039440 B = 0.010277 C = 0.008548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 709.763038 B = 2723.947036 C = 3274.668352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.119 4.119 3 C 0.102 3.898 4 H 0.047 0.953 5 O -0.391 6.391 6 C 0.058 3.942 7 C -0.149 4.149 8 C -0.106 4.106 9 C -0.096 4.096 10 H 0.050 0.950 11 C 0.019 3.981 12 C -0.606 4.606 13 H 0.048 0.952 14 C -0.040 4.040 15 N -0.940 5.940 16 Si 1.116 2.884 17 H -0.274 1.274 18 H -0.270 1.270 19 H -0.283 1.283 20 H 0.066 0.934 21 H 0.052 0.948 22 H 0.062 0.938 23 H 0.063 0.937 24 H 0.063 0.937 25 H 0.118 0.882 26 H 0.052 0.948 27 H 0.064 0.936 28 H 0.092 0.908 29 H 0.048 0.952 30 H 0.052 0.948 31 H -0.001 1.001 32 H -0.015 1.015 33 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.311 5.865 -9.099 12.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.157 4.157 3 C 0.045 3.955 4 H 0.065 0.935 5 O -0.310 6.310 6 C -0.019 4.019 7 C -0.186 4.186 8 C -0.144 4.144 9 C -0.115 4.115 10 H 0.069 0.931 11 C -0.018 4.018 12 C -0.644 4.644 13 H 0.066 0.934 14 C -0.237 4.237 15 N -0.578 5.578 16 Si 0.938 3.062 17 H -0.199 1.199 18 H -0.195 1.195 19 H -0.208 1.208 20 H 0.085 0.915 21 H 0.071 0.929 22 H 0.081 0.919 23 H 0.082 0.918 24 H 0.082 0.918 25 H 0.136 0.864 26 H 0.070 0.930 27 H 0.083 0.917 28 H 0.110 0.890 29 H 0.067 0.933 30 H 0.071 0.929 31 H 0.017 0.983 32 H 0.003 0.997 33 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -5.181 5.277 -8.304 11.119 hybrid contribution -1.014 0.470 -0.371 1.178 sum -6.195 5.747 -8.674 12.110 Atomic orbital electron populations 1.21655 0.93590 1.02216 1.02079 1.21590 0.97786 0.94173 1.02106 1.22072 0.93054 0.94122 0.86262 0.93535 1.87829 1.78635 1.25863 1.38706 1.22751 0.93612 0.82392 1.03110 1.22203 0.97215 1.02015 0.97182 1.21495 1.00616 0.94772 0.97512 1.21577 0.95153 0.96881 0.97924 0.93117 1.19197 0.95870 0.94101 0.92621 1.22423 0.93122 1.43983 1.04836 0.93385 1.27345 1.11143 0.92996 0.92266 1.70889 1.06951 1.46471 1.33461 0.82942 0.69341 0.77537 0.76381 1.19928 1.19496 1.20836 0.91545 0.92873 0.91862 0.91815 0.91805 0.86403 0.92965 0.91697 0.88965 0.93310 0.92877 0.98331 0.99700 0.93533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.81 9.81 71.98 0.71 -3.10 16 2 C -0.12 -4.12 5.48 30.59 0.17 -3.95 16 3 C 0.10 3.76 2.14 30.63 0.07 3.83 16 4 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 5 O -0.39 -12.93 9.94 -148.98 -1.48 -14.41 16 6 C 0.06 1.53 6.84 72.01 0.49 2.02 16 7 C -0.15 -4.27 6.13 30.69 0.19 -4.08 16 8 C -0.11 -4.07 5.07 30.71 0.16 -3.92 16 9 C -0.10 -4.13 1.83 -10.70 -0.02 -4.15 16 10 H 0.05 2.29 8.14 -2.39 -0.02 2.27 16 11 C 0.02 1.00 3.59 29.85 0.11 1.11 16 12 C -0.61 -34.86 8.45 25.60 0.22 -34.64 16 13 H 0.05 2.72 7.07 -2.91 -0.02 2.70 16 14 C -0.04 -2.37 5.46 84.65 0.46 -1.91 16 15 N -0.94 -58.90 13.65 21.45 0.29 -58.61 16 16 Si 1.12 51.12 29.90 68.60 2.05 53.17 16 17 H -0.27 -11.83 7.11 99.48 0.71 -11.13 16 18 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 19 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 20 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 21 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 22 H 0.06 1.67 7.83 -2.39 -0.02 1.65 16 23 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 24 H 0.06 2.45 6.16 -2.39 -0.01 2.43 16 25 H 0.12 2.39 8.14 -2.39 -0.02 2.37 16 26 H 0.05 1.31 8.14 -2.39 -0.02 1.30 16 27 H 0.06 1.89 8.14 -2.38 -0.02 1.87 16 28 H 0.09 2.15 8.14 -2.38 -0.02 2.13 16 29 H 0.05 1.88 8.14 -2.38 -0.02 1.86 16 30 H 0.05 2.22 7.07 -2.39 -0.02 2.20 16 31 H 0.00 -0.08 6.04 -2.38 -0.01 -0.09 16 32 H -0.02 -0.86 8.00 -2.39 -0.02 -0.88 16 33 H 0.26 16.17 7.22 -92.70 -0.67 15.50 16 Total: -1.00 -64.97 260.45 4.56 -60.41 By element: Atomic # 1 Polarization: 7.09 SS G_CDS: 1.15 Total: 8.24 kcal Atomic # 6 Polarization: -51.34 SS G_CDS: 2.54 Total: -48.80 kcal Atomic # 7 Polarization: -58.90 SS G_CDS: 0.29 Total: -58.61 kcal Atomic # 8 Polarization: -12.93 SS G_CDS: -1.48 Total: -14.41 kcal Atomic # 14 Polarization: 51.12 SS G_CDS: 2.05 Total: 53.17 kcal Total: -64.97 4.56 -60.41 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259651575.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.260 kcal (2) G-P(sol) polarization free energy of solvation -64.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.411 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds