Wall clock time and date at job start Mon Mar 30 2020 02:16:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53005 * 109.47106 * 2 1 4 4 H 1.08998 * 109.47774 * 305.02231 * 3 2 1 5 5 C 1.53086 * 109.48237 * 184.99702 * 3 2 1 6 6 C 1.53174 * 109.16712 * 182.40801 * 5 3 2 7 7 C 1.53181 * 109.03351 * 56.98176 * 6 5 3 8 8 H 1.08992 * 109.52321 * 62.99242 * 7 6 5 9 9 C 1.53000 * 109.51907 * 183.11859 * 7 6 5 10 10 C 1.50708 * 109.46973 * 184.87304 * 9 7 6 11 11 H 1.07991 * 119.99789 * 0.02562 * 10 9 7 12 12 C 1.37877 * 120.00008 * 179.97438 * 10 9 7 13 13 N 1.31514 * 120.00089 * 180.02562 * 12 10 9 14 14 Si 1.86798 * 119.99938 * 0.02562 * 12 10 9 15 15 H 1.48506 * 109.47297 * 269.99556 * 14 12 10 16 16 H 1.48503 * 109.47261 * 149.99737 * 14 12 10 17 17 H 1.48500 * 109.47454 * 29.99730 * 14 12 10 18 18 C 1.53092 * 109.21342 * 303.05070 * 7 6 5 19 19 O 1.42905 * 109.41411 * 57.51234 * 18 7 6 20 20 H 1.08998 * 109.46473 * 60.00212 * 1 2 3 21 21 H 1.08993 * 109.46843 * 179.97438 * 1 2 3 22 22 H 1.08998 * 109.47283 * 300.00396 * 1 2 3 23 23 H 1.08992 * 109.47427 * 240.00034 * 2 1 3 24 24 H 1.09003 * 109.46938 * 119.99796 * 2 1 3 25 25 H 1.09003 * 109.52312 * 62.50148 * 5 3 2 26 26 H 1.09003 * 109.52635 * 302.31920 * 5 3 2 27 27 H 1.08998 * 109.54320 * 297.11699 * 6 5 3 28 28 H 1.08994 * 109.61996 * 176.89071 * 6 5 3 29 29 H 1.08994 * 109.48028 * 64.87362 * 9 7 6 30 30 H 1.09000 * 109.47206 * 304.87216 * 9 7 6 31 31 H 0.96997 * 119.99848 * 180.02562 * 13 12 10 32 32 H 1.09005 * 109.48028 * 177.56489 * 18 7 6 33 33 H 1.08999 * 109.48136 * 297.59579 * 18 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6052 1.9818 -0.8415 5 6 3.5658 1.4447 -0.1257 6 6 4.0734 2.8885 -0.0645 7 6 3.5969 3.5306 1.2421 8 1 4.0322 2.9998 2.0887 9 6 4.0319 4.9970 1.2795 10 6 3.6681 5.5950 2.6142 11 1 3.1763 4.9896 3.3611 12 6 3.9641 6.9147 2.8820 13 7 3.6472 7.4364 4.0469 14 14 4.8154 7.9617 1.5903 15 1 6.2871 7.8561 1.7587 16 1 4.3996 9.3784 1.7486 17 1 4.4365 7.4829 0.2366 18 6 2.0700 3.4479 1.3166 19 8 1.6632 2.0813 1.2216 20 1 -0.3632 0.5138 -0.8900 21 1 -0.3633 -1.0276 -0.0005 22 1 -0.3634 0.5139 0.8899 23 1 1.8934 -0.5138 -0.8899 24 1 1.8934 -0.5138 0.8900 25 1 3.8535 0.9975 -1.0772 26 1 3.9996 0.8710 0.6933 27 1 3.6792 3.4499 -0.9115 28 1 5.1628 2.8952 -0.0978 29 1 3.5264 5.5464 0.4854 30 1 5.1104 5.0599 1.1350 31 1 3.8551 8.3650 4.2351 32 1 1.7292 3.8647 2.2644 33 1 1.6347 4.0138 0.4930 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259674726.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:15 Heat of formation + Delta-G solvation = -81.251070 kcal Electronic energy + Delta-G solvation = -13032.105705 eV Core-core repulsion = 10863.514337 eV Total energy + Delta-G solvation = -2168.591369 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.12214 -34.76679 -33.43223 -32.42486 -30.48265 -27.20353 -24.80363 -23.61459 -21.35473 -20.64347 -19.37924 -16.75840 -16.08207 -15.31660 -14.37115 -14.25436 -13.97492 -13.49811 -13.11556 -12.89900 -12.48463 -12.18011 -11.89117 -11.54683 -11.46049 -10.99266 -10.83824 -10.65845 -10.57980 -10.25742 -9.91627 -9.69031 -9.42955 -9.09245 -8.77595 -8.52549 -6.04358 -4.02433 3.30014 3.37688 3.41015 4.24928 4.44862 4.87820 5.12637 5.26695 5.29730 5.33150 5.49425 5.56469 5.64275 5.71912 5.94680 5.97341 6.02441 6.12798 6.24349 6.25622 6.33301 6.41199 6.43755 6.70709 6.83196 6.91284 7.22691 7.40895 7.78420 7.80591 8.53534 9.00562 9.58173 11.08848 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.062705 B = 0.008144 C = 0.007584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 446.427631 B = 3437.331089 C = 3691.159550 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.115 4.115 3 C 0.089 3.911 4 H 0.050 0.950 5 C -0.148 4.148 6 C -0.121 4.121 7 C -0.106 4.106 8 H 0.070 0.930 9 C -0.008 4.008 10 C -0.520 4.520 11 H 0.074 0.926 12 C 0.067 3.933 13 N -0.902 5.902 14 Si 0.879 3.121 15 H -0.278 1.278 16 H -0.288 1.288 17 H -0.266 1.266 18 C 0.075 3.925 19 O -0.386 6.386 20 H 0.049 0.951 21 H 0.049 0.951 22 H 0.064 0.936 23 H 0.069 0.931 24 H 0.068 0.932 25 H 0.062 0.938 26 H 0.067 0.933 27 H 0.056 0.944 28 H 0.061 0.939 29 H 0.016 0.984 30 H 0.014 0.986 31 H 0.263 0.737 32 H 0.106 0.894 33 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.378 -11.530 -9.790 15.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.153 4.153 3 C 0.031 3.969 4 H 0.068 0.932 5 C -0.186 4.186 6 C -0.158 4.158 7 C -0.124 4.124 8 H 0.089 0.911 9 C -0.045 4.045 10 C -0.558 4.558 11 H 0.092 0.908 12 C -0.134 4.134 13 N -0.541 5.541 14 Si 0.706 3.294 15 H -0.203 1.203 16 H -0.214 1.214 17 H -0.191 1.191 18 C -0.001 4.001 19 O -0.305 6.305 20 H 0.068 0.932 21 H 0.068 0.932 22 H 0.083 0.917 23 H 0.087 0.913 24 H 0.087 0.913 25 H 0.081 0.919 26 H 0.086 0.914 27 H 0.075 0.925 28 H 0.079 0.921 29 H 0.034 0.966 30 H 0.032 0.968 31 H 0.072 0.928 32 H 0.124 0.876 33 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -2.477 -11.454 -9.541 15.111 hybrid contribution 0.738 0.924 -0.785 1.419 sum -1.739 -10.530 -10.326 14.850 Atomic orbital electron populations 1.21712 0.95553 1.00994 1.02374 1.21537 0.96483 0.95087 1.02169 1.22037 0.93514 0.93407 0.87929 0.93162 1.22208 0.96501 0.98153 1.01704 1.21729 1.00561 0.94665 0.98873 1.21635 0.95899 0.98742 0.96151 0.91128 1.19575 0.96004 0.91079 0.97886 1.21164 1.39253 0.96332 0.99072 0.90751 1.25033 0.95338 0.97909 0.95170 1.69916 1.47904 1.14200 1.22124 0.86800 0.80151 0.79599 0.82849 1.20340 1.21406 1.19091 1.22690 0.94340 0.80416 1.02657 1.87878 1.78676 1.26323 1.37625 0.93164 0.93203 0.91734 0.91266 0.91304 0.91945 0.91380 0.92535 0.92057 0.96621 0.96816 0.92754 0.87619 0.94144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.69 9.81 37.16 0.36 -1.33 16 2 C -0.12 -1.39 5.64 -26.73 -0.15 -1.54 16 3 C 0.09 1.31 2.65 -26.68 -0.07 1.24 16 4 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 5 C -0.15 -2.11 5.42 -26.60 -0.14 -2.26 16 6 C -0.12 -2.01 5.31 -26.55 -0.14 -2.15 16 7 C -0.11 -2.14 2.34 -90.48 -0.21 -2.35 16 8 H 0.07 1.51 8.14 -51.93 -0.42 1.09 16 9 C -0.01 -0.19 3.52 -27.88 -0.10 -0.29 16 10 C -0.52 -14.69 9.00 -34.44 -0.31 -15.00 16 11 H 0.07 2.25 7.31 -52.49 -0.38 1.87 16 12 C 0.07 1.94 5.47 -17.82 -0.10 1.84 16 13 N -0.90 -27.83 13.96 55.43 0.77 -27.06 16 14 Si 0.88 21.77 27.47 -169.99 -4.67 17.10 16 15 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 16 H -0.29 -7.08 7.11 56.52 0.40 -6.67 16 17 H -0.27 -6.34 6.54 56.52 0.37 -5.97 16 18 C 0.07 1.47 5.90 37.20 0.22 1.69 16 19 O -0.39 -6.99 9.94 -35.23 -0.35 -7.34 16 20 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 21 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 22 H 0.06 0.83 7.82 -51.93 -0.41 0.42 16 23 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 24 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 25 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 26 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 27 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 28 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 29 H 0.02 0.37 7.20 -51.93 -0.37 0.00 16 30 H 0.01 0.32 7.57 -51.93 -0.39 -0.07 16 31 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 32 H 0.11 2.28 7.04 -51.93 -0.37 1.91 16 33 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 LS Contribution 261.99 15.07 3.95 3.95 Total: -1.00 -29.90 261.99 -6.68 -36.58 By element: Atomic # 1 Polarization: 2.65 SS G_CDS: -5.74 Total: -3.09 kcal Atomic # 6 Polarization: -19.49 SS G_CDS: -0.64 Total: -20.13 kcal Atomic # 7 Polarization: -27.83 SS G_CDS: 0.77 Total: -27.06 kcal Atomic # 8 Polarization: -6.99 SS G_CDS: -0.35 Total: -7.34 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -4.67 Total: 17.10 kcal Total LS contribution 3.95 Total: 3.95 kcal Total: -29.90 -6.68 -36.58 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259674726.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.675 kcal (2) G-P(sol) polarization free energy of solvation -29.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.676 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.576 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds