Wall clock time and date at job start Mon Mar 30 2020 02:16:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53005 * 109.47106 * 2 1 4 4 H 1.08998 * 109.47774 * 305.02231 * 3 2 1 5 5 C 1.53086 * 109.48237 * 184.99702 * 3 2 1 6 6 C 1.53174 * 109.16712 * 182.40801 * 5 3 2 7 7 C 1.53181 * 109.03351 * 56.98176 * 6 5 3 8 8 H 1.08992 * 109.52321 * 62.99242 * 7 6 5 9 9 C 1.53000 * 109.51907 * 183.11859 * 7 6 5 10 10 C 1.50708 * 109.46973 * 184.87304 * 9 7 6 11 11 H 1.07991 * 119.99789 * 0.02562 * 10 9 7 12 12 C 1.37877 * 120.00008 * 179.97438 * 10 9 7 13 13 N 1.31514 * 120.00089 * 180.02562 * 12 10 9 14 14 Si 1.86798 * 119.99938 * 0.02562 * 12 10 9 15 15 H 1.48506 * 109.47297 * 269.99556 * 14 12 10 16 16 H 1.48503 * 109.47261 * 149.99737 * 14 12 10 17 17 H 1.48500 * 109.47454 * 29.99730 * 14 12 10 18 18 C 1.53092 * 109.21342 * 303.05070 * 7 6 5 19 19 O 1.42905 * 109.41411 * 57.51234 * 18 7 6 20 20 H 1.08998 * 109.46473 * 60.00212 * 1 2 3 21 21 H 1.08993 * 109.46843 * 179.97438 * 1 2 3 22 22 H 1.08998 * 109.47283 * 300.00396 * 1 2 3 23 23 H 1.08992 * 109.47427 * 240.00034 * 2 1 3 24 24 H 1.09003 * 109.46938 * 119.99796 * 2 1 3 25 25 H 1.09003 * 109.52312 * 62.50148 * 5 3 2 26 26 H 1.09003 * 109.52635 * 302.31920 * 5 3 2 27 27 H 1.08998 * 109.54320 * 297.11699 * 6 5 3 28 28 H 1.08994 * 109.61996 * 176.89071 * 6 5 3 29 29 H 1.08994 * 109.48028 * 64.87362 * 9 7 6 30 30 H 1.09000 * 109.47206 * 304.87216 * 9 7 6 31 31 H 0.96997 * 119.99848 * 180.02562 * 13 12 10 32 32 H 1.09005 * 109.48028 * 177.56489 * 18 7 6 33 33 H 1.08999 * 109.48136 * 297.59579 * 18 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6052 1.9818 -0.8415 5 6 3.5658 1.4447 -0.1257 6 6 4.0734 2.8885 -0.0645 7 6 3.5969 3.5306 1.2421 8 1 4.0322 2.9998 2.0887 9 6 4.0319 4.9970 1.2795 10 6 3.6681 5.5950 2.6142 11 1 3.1763 4.9896 3.3611 12 6 3.9641 6.9147 2.8820 13 7 3.6472 7.4364 4.0469 14 14 4.8154 7.9617 1.5903 15 1 6.2871 7.8561 1.7587 16 1 4.3996 9.3784 1.7486 17 1 4.4365 7.4829 0.2366 18 6 2.0700 3.4479 1.3166 19 8 1.6632 2.0813 1.2216 20 1 -0.3632 0.5138 -0.8900 21 1 -0.3633 -1.0276 -0.0005 22 1 -0.3634 0.5139 0.8899 23 1 1.8934 -0.5138 -0.8899 24 1 1.8934 -0.5138 0.8900 25 1 3.8535 0.9975 -1.0772 26 1 3.9996 0.8710 0.6933 27 1 3.6792 3.4499 -0.9115 28 1 5.1628 2.8952 -0.0978 29 1 3.5264 5.5464 0.4854 30 1 5.1104 5.0599 1.1350 31 1 3.8551 8.3650 4.2351 32 1 1.7292 3.8647 2.2644 33 1 1.6347 4.0138 0.4930 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259674726.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:14 Heat of formation + Delta-G solvation = -99.570197 kcal Electronic energy + Delta-G solvation = -13032.900082 eV Core-core repulsion = 10863.514337 eV Total energy + Delta-G solvation = -2169.385745 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.49518 -36.36900 -34.66624 -34.38174 -31.95305 -28.91616 -26.13770 -25.29391 -22.71437 -21.96136 -20.91840 -18.90607 -17.40327 -16.72937 -16.34963 -15.65752 -15.28959 -14.77701 -14.50391 -14.40511 -14.15242 -13.56358 -13.46236 -13.23188 -12.68775 -12.56762 -12.10442 -11.97824 -11.90536 -11.81439 -11.61370 -11.47757 -11.02254 -10.93665 -10.76888 -10.18677 -8.28330 -6.32232 1.35471 1.37173 1.49024 2.36178 2.93096 3.07878 3.79676 3.95501 4.02749 4.08489 4.26631 4.37372 4.44740 4.56829 4.62625 4.79654 4.85974 4.94715 4.99913 5.09512 5.10646 5.12872 5.21510 5.24062 5.35714 5.42979 5.49685 5.61247 5.68414 6.29134 6.43255 6.75322 7.32033 8.88398 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.062705 B = 0.008144 C = 0.007584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 446.427631 B = 3437.331089 C = 3691.159550 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.112 4.112 3 C 0.077 3.923 4 H 0.058 0.942 5 C -0.142 4.142 6 C -0.117 4.117 7 C -0.103 4.103 8 H 0.049 0.951 9 C -0.004 4.004 10 C -0.528 4.528 11 H 0.033 0.967 12 C 0.003 3.997 13 N -0.952 5.952 14 Si 0.950 3.050 15 H -0.267 1.267 16 H -0.285 1.285 17 H -0.245 1.245 18 C 0.083 3.917 19 O -0.400 6.400 20 H 0.056 0.944 21 H 0.069 0.931 22 H 0.040 0.960 23 H 0.100 0.900 24 H 0.062 0.938 25 H 0.098 0.902 26 H 0.063 0.937 27 H 0.066 0.934 28 H 0.071 0.929 29 H 0.022 0.978 30 H 0.020 0.980 31 H 0.265 0.735 32 H 0.071 0.929 33 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.599 -12.483 -12.757 17.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.149 4.149 3 C 0.020 3.980 4 H 0.076 0.924 5 C -0.180 4.180 6 C -0.154 4.154 7 C -0.122 4.122 8 H 0.068 0.932 9 C -0.041 4.041 10 C -0.566 4.566 11 H 0.051 0.949 12 C -0.194 4.194 13 N -0.593 5.593 14 Si 0.774 3.226 15 H -0.192 1.192 16 H -0.211 1.211 17 H -0.169 1.169 18 C 0.007 3.993 19 O -0.320 6.320 20 H 0.075 0.925 21 H 0.087 0.913 22 H 0.059 0.941 23 H 0.118 0.882 24 H 0.081 0.919 25 H 0.116 0.884 26 H 0.082 0.918 27 H 0.085 0.915 28 H 0.089 0.911 29 H 0.040 0.960 30 H 0.039 0.961 31 H 0.074 0.926 32 H 0.089 0.911 33 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -1.700 -12.436 -12.519 17.728 hybrid contribution 0.433 1.138 0.209 1.235 sum -1.267 -11.298 -12.311 16.757 Atomic orbital electron populations 1.21710 0.95301 1.02055 1.01554 1.21575 0.96722 0.93236 1.03359 1.22414 0.94276 0.94769 0.86548 0.92380 1.22191 0.95763 0.96540 1.03457 1.21689 1.01239 0.96035 0.96444 1.21537 0.96083 0.96641 0.97966 0.93199 1.19518 0.96307 0.93166 0.95148 1.21476 1.38425 0.96314 1.00361 0.94904 1.26031 0.96266 0.99508 0.97577 1.70077 1.49755 1.14821 1.24644 0.85657 0.79117 0.77405 0.80455 1.19248 1.21070 1.16872 1.22377 0.94097 0.81709 1.01127 1.87865 1.78905 1.25241 1.39970 0.92451 0.91250 0.94097 0.88207 0.91892 0.88382 0.91844 0.91496 0.91063 0.95976 0.96123 0.92571 0.91095 0.93455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.06 9.81 71.98 0.71 -2.36 16 2 C -0.11 -2.36 5.64 30.60 0.17 -2.19 16 3 C 0.08 2.09 2.65 30.62 0.08 2.17 16 4 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 5 C -0.14 -3.58 5.42 30.68 0.17 -3.42 16 6 C -0.12 -3.56 5.31 30.71 0.16 -3.40 16 7 C -0.10 -4.16 2.34 -10.70 -0.02 -4.18 16 8 H 0.05 2.18 8.14 -2.39 -0.02 2.16 16 9 C 0.00 -0.19 3.52 29.85 0.11 -0.08 16 10 C -0.53 -30.69 9.00 25.60 0.23 -30.45 16 11 H 0.03 2.11 7.31 -2.92 -0.02 2.09 16 12 C 0.00 0.16 5.47 84.65 0.46 0.62 16 13 N -0.95 -60.50 13.96 21.45 0.30 -60.20 16 14 Si 0.95 44.48 27.47 68.60 1.88 46.36 16 15 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 16 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 17 H -0.25 -10.57 6.54 99.48 0.65 -9.92 16 18 C 0.08 3.34 5.90 72.01 0.43 3.77 16 19 O -0.40 -14.42 9.94 -148.98 -1.48 -15.90 16 20 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 21 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 22 H 0.04 1.02 7.82 -2.39 -0.02 1.00 16 23 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16 24 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 25 H 0.10 1.84 8.14 -2.39 -0.02 1.82 16 26 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 27 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 28 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 29 H 0.02 1.01 7.20 -2.39 -0.02 0.99 16 30 H 0.02 0.94 7.57 -2.39 -0.02 0.92 16 31 H 0.27 15.72 8.31 -92.71 -0.77 14.95 16 32 H 0.07 3.27 7.04 -2.38 -0.02 3.26 16 33 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 Total: -1.00 -65.95 261.99 4.18 -61.77 By element: Atomic # 1 Polarization: 6.51 SS G_CDS: 0.99 Total: 7.50 kcal Atomic # 6 Polarization: -42.01 SS G_CDS: 2.49 Total: -39.52 kcal Atomic # 7 Polarization: -60.50 SS G_CDS: 0.30 Total: -60.20 kcal Atomic # 8 Polarization: -14.42 SS G_CDS: -1.48 Total: -15.90 kcal Atomic # 14 Polarization: 44.48 SS G_CDS: 1.88 Total: 46.36 kcal Total: -65.95 4.18 -61.77 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259674726.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.802 kcal (2) G-P(sol) polarization free energy of solvation -65.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.768 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds