Wall clock time and date at job start Mon Mar 30 2020 02:16:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.46847 * 2 1 4 4 H 1.09003 * 109.49160 * 304.97586 * 3 2 1 5 5 C 1.53087 * 109.48101 * 184.94377 * 3 2 1 6 6 C 1.53176 * 109.16402 * 182.40729 * 5 3 2 7 7 C 1.53179 * 109.03422 * 56.98167 * 6 5 3 8 8 H 1.09004 * 109.57543 * 183.07817 * 7 6 5 9 9 C 1.53004 * 109.52435 * 62.92815 * 7 6 5 10 10 C 1.50701 * 109.47211 * 175.31706 * 9 7 6 11 11 H 1.08002 * 119.99761 * 359.97438 * 10 9 7 12 12 C 1.37871 * 119.99694 * 180.27574 * 10 9 7 13 13 N 1.31514 * 120.00482 * 359.71466 * 12 10 9 14 14 Si 1.86801 * 119.99746 * 179.72062 * 12 10 9 15 15 H 1.48504 * 109.47266 * 60.00049 * 14 12 10 16 16 H 1.48504 * 109.46970 * 179.97438 * 14 12 10 17 17 H 1.48499 * 109.47383 * 299.99456 * 14 12 10 18 18 C 1.53090 * 109.16612 * 303.01841 * 7 6 5 19 19 O 1.42903 * 109.41188 * 57.60881 * 18 7 6 20 20 H 1.09007 * 109.46731 * 180.02562 * 1 2 3 21 21 H 1.09004 * 109.47225 * 299.99362 * 1 2 3 22 22 H 1.08995 * 109.47436 * 59.99798 * 1 2 3 23 23 H 1.08995 * 109.46964 * 240.00091 * 2 1 3 24 24 H 1.09003 * 109.47316 * 119.99897 * 2 1 3 25 25 H 1.09000 * 109.52186 * 302.31693 * 5 3 2 26 26 H 1.09004 * 109.52206 * 62.50451 * 5 3 2 27 27 H 1.09000 * 109.54717 * 297.11433 * 6 5 3 28 28 H 1.09003 * 109.54315 * 176.84504 * 6 5 3 29 29 H 1.09000 * 109.47211 * 55.30732 * 9 7 6 30 30 H 1.09007 * 109.46376 * 295.31275 * 9 7 6 31 31 H 0.96995 * 120.00207 * 179.97438 * 13 12 10 32 32 H 1.08992 * 109.48374 * 177.59292 * 18 7 6 33 33 H 1.09003 * 109.47969 * 297.62865 * 18 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6058 1.9818 -0.8420 5 6 3.5658 1.4447 -0.1244 6 6 4.0732 2.8886 -0.0631 7 6 3.5955 3.5311 1.2428 8 1 3.9055 4.5757 1.2706 9 6 4.2043 2.7854 2.4321 10 6 3.8271 3.4870 3.7114 11 1 3.2148 4.3761 3.6793 12 6 4.2689 2.9975 4.9221 13 7 5.0148 1.9150 4.9612 14 14 3.8078 3.8716 6.5073 15 1 2.3296 3.8953 6.6477 16 1 4.4027 3.1506 7.6612 17 1 4.3242 5.2635 6.4733 18 6 2.0686 3.4484 1.3144 19 8 1.6620 2.0816 1.2211 20 1 -0.3633 -1.0278 0.0005 21 1 -0.3634 0.5137 0.8901 22 1 -0.3634 0.5138 -0.8899 23 1 1.8933 -0.5138 -0.8900 24 1 1.8934 -0.5138 0.8900 25 1 3.9988 0.8712 0.6952 26 1 3.8543 0.9972 -1.0755 27 1 3.6798 3.4497 -0.9108 28 1 5.1628 2.8938 -0.0948 29 1 5.2897 2.7684 2.3333 30 1 3.8253 1.7636 2.4527 31 1 5.3259 1.5708 5.8130 32 1 1.7259 3.8657 2.2612 33 1 1.6348 4.0138 0.4896 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259674729.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:17 Heat of formation + Delta-G solvation = -79.779273 kcal Electronic energy + Delta-G solvation = -13313.201350 eV Core-core repulsion = 11144.673803 eV Total energy + Delta-G solvation = -2168.527547 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -39.05983 -34.42978 -33.21466 -32.32878 -29.87156 -26.85102 -24.69815 -23.47647 -22.00257 -20.84721 -18.27472 -16.38644 -15.72279 -15.33772 -14.45659 -14.12558 -13.66921 -13.42128 -13.14400 -12.69405 -12.11664 -11.86555 -11.63936 -11.42767 -11.03433 -10.82349 -10.71582 -10.62432 -10.41480 -10.12475 -9.93938 -9.65256 -9.10115 -8.90166 -8.53486 -8.23816 -5.91008 -3.91755 3.38066 3.42247 3.44565 4.45444 4.52756 5.08526 5.33148 5.44357 5.47931 5.55000 5.64855 5.73080 5.79316 5.92346 6.00509 6.11057 6.16313 6.27464 6.37971 6.45061 6.53281 6.60657 6.67238 6.78220 6.95558 7.22698 7.73468 7.95444 8.01491 8.11949 8.51801 9.13627 9.70561 11.20497 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.041079 B = 0.009936 C = 0.009284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 681.449644 B = 2817.397837 C = 3015.280231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.117 4.117 3 C 0.092 3.908 4 H 0.044 0.956 5 C -0.149 4.149 6 C -0.115 4.115 7 C -0.121 4.121 8 H 0.063 0.937 9 C 0.033 3.967 10 C -0.514 4.514 11 H 0.052 0.948 12 C 0.057 3.943 13 N -0.896 5.896 14 Si 0.888 3.112 15 H -0.277 1.277 16 H -0.288 1.288 17 H -0.278 1.278 18 C 0.079 3.921 19 O -0.367 6.367 20 H 0.048 0.952 21 H 0.063 0.937 22 H 0.046 0.954 23 H 0.067 0.933 24 H 0.072 0.928 25 H 0.080 0.920 26 H 0.057 0.943 27 H 0.045 0.955 28 H 0.060 0.940 29 H 0.011 0.989 30 H 0.029 0.971 31 H 0.259 0.741 32 H 0.098 0.902 33 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.474 -1.063 -10.198 11.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.154 4.154 3 C 0.034 3.966 4 H 0.062 0.938 5 C -0.187 4.187 6 C -0.153 4.153 7 C -0.140 4.140 8 H 0.081 0.919 9 C -0.004 4.004 10 C -0.552 4.552 11 H 0.070 0.930 12 C -0.143 4.143 13 N -0.536 5.536 14 Si 0.716 3.284 15 H -0.203 1.203 16 H -0.214 1.214 17 H -0.204 1.204 18 C 0.003 3.997 19 O -0.286 6.286 20 H 0.067 0.933 21 H 0.082 0.918 22 H 0.066 0.934 23 H 0.086 0.914 24 H 0.091 0.909 25 H 0.099 0.901 26 H 0.075 0.925 27 H 0.064 0.936 28 H 0.079 0.921 29 H 0.029 0.971 30 H 0.047 0.953 31 H 0.069 0.931 32 H 0.117 0.883 33 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges -5.485 -1.280 -9.926 11.412 hybrid contribution 0.066 0.651 0.737 0.985 sum -5.419 -0.630 -9.189 10.686 Atomic orbital electron populations 1.21702 0.95773 1.00902 1.02074 1.21531 0.96223 0.95272 1.02375 1.21991 0.93658 0.93376 0.87577 0.93812 1.22202 0.96433 0.98166 1.01885 1.21626 1.00529 0.95417 0.97678 1.21857 0.95761 1.00175 0.96161 0.91860 1.19071 0.95054 0.96087 0.90151 1.21194 1.31481 1.11065 0.91471 0.92953 1.24979 0.95323 0.95066 0.98981 1.69951 1.35837 1.22156 1.25607 0.86725 0.78756 0.79645 0.83248 1.20274 1.21393 1.20419 1.22526 0.94573 0.81909 1.00700 1.87951 1.77946 1.25340 1.37347 0.93285 0.91759 0.93442 0.91412 0.90891 0.90117 0.92468 0.93611 0.92140 0.97098 0.95320 0.93127 0.88349 0.95785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.94 9.81 37.16 0.36 -1.57 16 2 C -0.12 -1.70 5.64 -26.73 -0.15 -1.85 16 3 C 0.09 1.54 2.64 -26.69 -0.07 1.47 16 4 H 0.04 0.68 8.14 -51.93 -0.42 0.25 16 5 C -0.15 -2.55 5.05 -26.60 -0.13 -2.68 16 6 C -0.11 -2.04 5.53 -26.55 -0.15 -2.19 16 7 C -0.12 -2.54 2.64 -90.48 -0.24 -2.78 16 8 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 9 C 0.03 0.87 3.97 -27.88 -0.11 0.76 16 10 C -0.51 -14.65 8.38 -34.44 -0.29 -14.94 16 11 H 0.05 1.44 7.07 -52.49 -0.37 1.07 16 12 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 13 N -0.90 -27.44 13.29 55.43 0.74 -26.70 16 14 Si 0.89 22.08 29.54 -169.99 -5.02 17.06 16 15 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 16 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 17 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 18 C 0.08 1.58 6.10 37.20 0.23 1.81 16 19 O -0.37 -7.50 9.28 -35.23 -0.33 -7.83 16 20 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 21 H 0.06 0.95 7.82 -51.93 -0.41 0.54 16 22 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 23 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 24 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 25 H 0.08 1.58 6.73 -51.93 -0.35 1.23 16 26 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 27 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 29 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.03 0.81 6.26 -51.93 -0.32 0.49 16 31 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 32 H 0.10 2.09 6.89 -51.93 -0.36 1.73 16 33 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 LS Contribution 261.30 15.07 3.94 3.94 Total: -1.00 -30.46 261.30 -6.92 -37.38 By element: Atomic # 1 Polarization: 2.15 SS G_CDS: -5.59 Total: -3.45 kcal Atomic # 6 Polarization: -19.75 SS G_CDS: -0.65 Total: -20.39 kcal Atomic # 7 Polarization: -27.44 SS G_CDS: 0.74 Total: -26.70 kcal Atomic # 8 Polarization: -7.50 SS G_CDS: -0.33 Total: -7.83 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.06 kcal Total LS contribution 3.94 Total: 3.94 kcal Total: -30.46 -6.92 -37.38 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259674729.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.403 kcal (2) G-P(sol) polarization free energy of solvation -30.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.864 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.376 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds