Wall clock time and date at job start Mon Mar 30 2020 02:16:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.46847 * 2 1 4 4 H 1.09003 * 109.49160 * 304.97586 * 3 2 1 5 5 C 1.53087 * 109.48101 * 184.94377 * 3 2 1 6 6 C 1.53176 * 109.16402 * 182.40729 * 5 3 2 7 7 C 1.53179 * 109.03422 * 56.98167 * 6 5 3 8 8 H 1.09004 * 109.57543 * 183.07817 * 7 6 5 9 9 C 1.53004 * 109.52435 * 62.92815 * 7 6 5 10 10 C 1.50701 * 109.47211 * 175.31706 * 9 7 6 11 11 H 1.08002 * 119.99761 * 359.97438 * 10 9 7 12 12 C 1.37871 * 119.99694 * 180.27574 * 10 9 7 13 13 N 1.31514 * 120.00482 * 359.71466 * 12 10 9 14 14 Si 1.86801 * 119.99746 * 179.72062 * 12 10 9 15 15 H 1.48504 * 109.47266 * 60.00049 * 14 12 10 16 16 H 1.48504 * 109.46970 * 179.97438 * 14 12 10 17 17 H 1.48499 * 109.47383 * 299.99456 * 14 12 10 18 18 C 1.53090 * 109.16612 * 303.01841 * 7 6 5 19 19 O 1.42903 * 109.41188 * 57.60881 * 18 7 6 20 20 H 1.09007 * 109.46731 * 180.02562 * 1 2 3 21 21 H 1.09004 * 109.47225 * 299.99362 * 1 2 3 22 22 H 1.08995 * 109.47436 * 59.99798 * 1 2 3 23 23 H 1.08995 * 109.46964 * 240.00091 * 2 1 3 24 24 H 1.09003 * 109.47316 * 119.99897 * 2 1 3 25 25 H 1.09000 * 109.52186 * 302.31693 * 5 3 2 26 26 H 1.09004 * 109.52206 * 62.50451 * 5 3 2 27 27 H 1.09000 * 109.54717 * 297.11433 * 6 5 3 28 28 H 1.09003 * 109.54315 * 176.84504 * 6 5 3 29 29 H 1.09000 * 109.47211 * 55.30732 * 9 7 6 30 30 H 1.09007 * 109.46376 * 295.31275 * 9 7 6 31 31 H 0.96995 * 120.00207 * 179.97438 * 13 12 10 32 32 H 1.08992 * 109.48374 * 177.59292 * 18 7 6 33 33 H 1.09003 * 109.47969 * 297.62865 * 18 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6058 1.9818 -0.8420 5 6 3.5658 1.4447 -0.1244 6 6 4.0732 2.8886 -0.0631 7 6 3.5955 3.5311 1.2428 8 1 3.9055 4.5757 1.2706 9 6 4.2043 2.7854 2.4321 10 6 3.8271 3.4870 3.7114 11 1 3.2148 4.3761 3.6793 12 6 4.2689 2.9975 4.9221 13 7 5.0148 1.9150 4.9612 14 14 3.8078 3.8716 6.5073 15 1 2.3296 3.8953 6.6477 16 1 4.4027 3.1506 7.6612 17 1 4.3242 5.2635 6.4733 18 6 2.0686 3.4484 1.3144 19 8 1.6620 2.0816 1.2211 20 1 -0.3633 -1.0278 0.0005 21 1 -0.3634 0.5137 0.8901 22 1 -0.3634 0.5138 -0.8899 23 1 1.8933 -0.5138 -0.8900 24 1 1.8934 -0.5138 0.8900 25 1 3.9988 0.8712 0.6952 26 1 3.8543 0.9972 -1.0755 27 1 3.6798 3.4497 -0.9108 28 1 5.1628 2.8938 -0.0948 29 1 5.2897 2.7684 2.3333 30 1 3.8253 1.7636 2.4527 31 1 5.3259 1.5708 5.8130 32 1 1.7259 3.8657 2.2612 33 1 1.6348 4.0138 0.4896 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259674729.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:17 Heat of formation + Delta-G solvation = -98.198875 kcal Electronic energy + Delta-G solvation = -13314.000084 eV Core-core repulsion = 11144.673803 eV Total energy + Delta-G solvation = -2169.326281 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.54998 -36.10889 -34.61040 -34.30951 -31.41357 -28.73371 -26.10288 -25.34102 -23.63942 -22.10115 -19.88227 -18.53929 -17.16645 -16.89163 -16.49363 -15.60918 -15.20524 -14.79898 -14.45595 -14.16158 -14.01956 -13.43790 -13.31708 -12.97766 -12.71021 -12.57627 -12.33902 -12.08055 -11.84689 -11.70821 -11.62067 -11.32994 -10.93106 -10.76014 -10.48030 -10.06596 -8.15406 -6.24257 1.38460 1.42090 1.49139 2.42477 3.07052 3.17809 3.82368 4.04842 4.11372 4.22959 4.28633 4.37918 4.46419 4.60385 4.65021 4.85391 4.88913 4.95011 5.07685 5.12020 5.17239 5.20877 5.30236 5.35227 5.46638 5.51433 5.57715 5.79353 5.93610 6.30754 6.58642 6.92040 7.43038 8.96512 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.041079 B = 0.009936 C = 0.009284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 681.449644 B = 2817.397837 C = 3015.280231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.117 4.117 3 C 0.085 3.915 4 H 0.071 0.929 5 C -0.147 4.147 6 C -0.112 4.112 7 C -0.119 4.119 8 H 0.066 0.934 9 C 0.044 3.956 10 C -0.531 4.531 11 H 0.060 0.940 12 C -0.003 4.003 13 N -0.936 5.936 14 Si 0.960 3.040 15 H -0.269 1.269 16 H -0.285 1.285 17 H -0.266 1.266 18 C 0.082 3.918 19 O -0.396 6.396 20 H 0.065 0.935 21 H 0.040 0.960 22 H 0.065 0.935 23 H 0.098 0.902 24 H 0.045 0.955 25 H 0.041 0.959 26 H 0.092 0.908 27 H 0.081 0.919 28 H 0.055 0.945 29 H -0.022 1.022 30 H -0.003 1.003 31 H 0.260 0.740 32 H 0.076 0.924 33 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.631 -0.254 -11.593 13.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.154 4.154 3 C 0.028 3.972 4 H 0.089 0.911 5 C -0.185 4.185 6 C -0.149 4.149 7 C -0.138 4.138 8 H 0.084 0.916 9 C 0.007 3.993 10 C -0.569 4.569 11 H 0.078 0.922 12 C -0.200 4.200 13 N -0.577 5.577 14 Si 0.785 3.215 15 H -0.194 1.194 16 H -0.211 1.211 17 H -0.190 1.190 18 C 0.005 3.995 19 O -0.315 6.315 20 H 0.084 0.916 21 H 0.059 0.941 22 H 0.084 0.916 23 H 0.116 0.884 24 H 0.064 0.936 25 H 0.060 0.940 26 H 0.111 0.889 27 H 0.100 0.900 28 H 0.074 0.926 29 H -0.003 1.003 30 H 0.015 0.985 31 H 0.069 0.931 32 H 0.094 0.906 33 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -6.648 -0.462 -11.334 13.148 hybrid contribution 0.447 0.357 1.128 1.265 sum -6.201 -0.105 -10.206 11.943 Atomic orbital electron populations 1.21668 0.94584 1.01988 1.01798 1.21583 0.97290 0.94001 1.02517 1.22291 0.93410 0.94544 0.86947 0.91101 1.22193 0.96746 0.97412 1.02156 1.21609 1.00445 0.96012 0.96851 1.21769 0.96709 0.99689 0.95643 0.91568 1.18872 0.93079 0.95059 0.92318 1.21663 1.31229 1.11355 0.92640 0.92176 1.25945 0.95245 0.95844 1.02994 1.70104 1.37147 1.23858 1.26543 0.85584 0.78735 0.78779 0.78450 1.19389 1.21057 1.19043 1.22438 0.93457 0.82440 1.01126 1.87922 1.78184 1.25687 1.39749 0.91604 0.94104 0.91558 0.88408 0.93601 0.94014 0.88942 0.90030 0.92580 1.00340 0.98473 0.93095 0.90583 0.92033 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.47 9.81 71.98 0.71 -2.77 16 2 C -0.12 -3.21 5.64 30.60 0.17 -3.04 16 3 C 0.09 2.70 2.64 30.62 0.08 2.78 16 4 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 5 C -0.15 -4.83 5.05 30.68 0.16 -4.68 16 6 C -0.11 -3.77 5.53 30.71 0.17 -3.61 16 7 C -0.12 -4.97 2.64 -10.70 -0.03 -5.00 16 8 H 0.07 2.69 8.14 -2.38 -0.02 2.67 16 9 C 0.04 2.38 3.97 29.85 0.12 2.50 16 10 C -0.53 -30.94 8.38 25.60 0.21 -30.72 16 11 H 0.06 3.32 7.07 -2.91 -0.02 3.30 16 12 C 0.00 -0.20 5.46 84.65 0.46 0.27 16 13 N -0.94 -59.11 13.29 21.45 0.28 -58.83 16 14 Si 0.96 45.76 29.54 68.60 2.03 47.79 16 15 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 16 H -0.29 -13.34 7.11 99.48 0.71 -12.64 16 17 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 18 C 0.08 3.17 6.10 72.01 0.44 3.61 16 19 O -0.40 -16.02 9.28 -148.98 -1.38 -17.40 16 20 H 0.06 1.36 8.14 -2.38 -0.02 1.34 16 21 H 0.04 1.17 7.82 -2.39 -0.02 1.15 16 22 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 23 H 0.10 2.09 8.14 -2.39 -0.02 2.07 16 24 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 25 H 0.04 1.68 6.73 -2.39 -0.02 1.66 16 26 H 0.09 2.36 8.14 -2.39 -0.02 2.34 16 27 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 28 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 29 H -0.02 -1.30 8.14 -2.39 -0.02 -1.32 16 30 H 0.00 -0.18 6.26 -2.38 -0.01 -0.20 16 31 H 0.26 15.53 8.31 -92.71 -0.77 14.76 16 32 H 0.08 3.23 6.89 -2.39 -0.02 3.21 16 33 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 Total: -1.00 -67.54 261.30 4.47 -63.08 By element: Atomic # 1 Polarization: 4.97 SS G_CDS: 1.05 Total: 6.02 kcal Atomic # 6 Polarization: -43.15 SS G_CDS: 2.49 Total: -40.66 kcal Atomic # 7 Polarization: -59.11 SS G_CDS: 0.28 Total: -58.83 kcal Atomic # 8 Polarization: -16.02 SS G_CDS: -1.38 Total: -17.40 kcal Atomic # 14 Polarization: 45.76 SS G_CDS: 2.03 Total: 47.79 kcal Total: -67.54 4.47 -63.08 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259674729.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.124 kcal (2) G-P(sol) polarization free energy of solvation -67.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.075 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds