Wall clock time and date at job start Mon Mar 30 2020 02:16:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53001 * 109.46848 * 2 1 4 4 H 1.08992 * 109.48192 * 54.97698 * 3 2 1 5 5 C 1.53096 * 109.48000 * 175.00181 * 3 2 1 6 6 C 1.53178 * 109.16278 * 177.60185 * 5 3 2 7 7 C 1.53178 * 109.03511 * 303.01594 * 6 5 3 8 8 H 1.08997 * 109.57176 * 176.91900 * 7 6 5 9 9 C 1.53001 * 109.52490 * 297.07853 * 7 6 5 10 10 C 1.50703 * 109.47095 * 184.68631 * 9 7 6 11 11 H 1.07997 * 119.99925 * 0.02562 * 10 9 7 12 12 C 1.37873 * 119.99702 * 179.97438 * 10 9 7 13 13 N 1.31510 * 120.00490 * 0.02562 * 12 10 9 14 14 Si 1.86803 * 119.99741 * 180.02562 * 12 10 9 15 15 H 1.48500 * 109.47206 * 60.00135 * 14 12 10 16 16 H 1.48500 * 109.47234 * 180.02562 * 14 12 10 17 17 H 1.48501 * 109.47258 * 300.00136 * 14 12 10 18 18 C 1.53093 * 109.16255 * 56.98447 * 7 6 5 19 19 O 1.42904 * 109.42351 * 302.38111 * 18 7 6 20 20 H 1.09000 * 109.47259 * 300.00152 * 1 2 3 21 21 H 1.09002 * 109.46702 * 60.00193 * 1 2 3 22 22 H 1.08996 * 109.46592 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.46972 * 240.00313 * 2 1 3 24 24 H 1.08999 * 109.47413 * 119.99966 * 2 1 3 25 25 H 1.08999 * 109.52155 * 57.69394 * 5 3 2 26 26 H 1.09004 * 109.51758 * 297.50939 * 5 3 2 27 27 H 1.09002 * 109.54068 * 183.15004 * 6 5 3 28 28 H 1.08996 * 109.54450 * 62.88578 * 6 5 3 29 29 H 1.09005 * 109.46859 * 304.68659 * 9 7 6 30 30 H 1.08991 * 109.47346 * 64.68424 * 9 7 6 31 31 H 0.96998 * 120.00300 * 180.02562 * 13 12 10 32 32 H 1.09002 * 109.48198 * 62.37219 * 18 7 6 33 33 H 1.08999 * 109.48029 * 182.39833 * 18 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6052 1.9818 0.8415 5 6 3.5658 1.4447 0.1257 6 6 4.0733 2.8886 0.0647 7 6 3.5968 3.5309 -1.2417 8 1 3.9068 4.5755 -1.2694 9 6 4.2066 2.7850 -2.4303 10 6 3.8307 3.4865 -3.7101 11 1 3.2184 4.3756 -3.6787 12 6 4.2692 2.9937 -4.9208 13 7 5.0151 1.9113 -4.9589 14 14 3.8038 3.8636 -6.5070 15 1 4.3201 5.2557 -6.4780 16 1 4.3955 3.1396 -7.6606 17 1 2.3252 3.8869 -6.6434 18 6 2.0699 3.4482 -1.3147 19 8 1.6630 2.0815 -1.2217 20 1 -0.3634 0.5139 0.8900 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3632 -1.0277 0.0005 23 1 1.8934 -0.5138 -0.8900 24 1 1.8935 -0.5138 0.8900 25 1 3.9996 0.8711 -0.6934 26 1 3.8534 0.9973 1.0772 27 1 5.1628 2.8938 0.0975 28 1 3.6791 3.4498 0.9119 29 1 5.2920 2.7680 -2.3306 30 1 3.8277 1.7633 -2.4512 31 1 5.3239 1.5649 -5.8107 32 1 1.6354 4.0138 -0.4904 33 1 1.7281 3.8655 -2.2618 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259674730.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:19 Heat of formation + Delta-G solvation = -79.773781 kcal Electronic energy + Delta-G solvation = -13313.587392 eV Core-core repulsion = 11145.060083 eV Total energy + Delta-G solvation = -2168.527308 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.05793 -34.42936 -33.21474 -32.32890 -29.87119 -26.85088 -24.69817 -23.47654 -22.00261 -20.84719 -18.27473 -16.38651 -15.72256 -15.33697 -14.45661 -14.12526 -13.66891 -13.42080 -13.14488 -12.69408 -12.11704 -11.86571 -11.63933 -11.42764 -11.03404 -10.82306 -10.71653 -10.62468 -10.41493 -10.12452 -9.93934 -9.65369 -9.10092 -8.90160 -8.53539 -8.23822 -5.90999 -3.91743 3.38073 3.42266 3.44591 4.45442 4.52766 5.08504 5.33153 5.44375 5.47905 5.54990 5.64818 5.73063 5.79326 5.92321 6.00505 6.11043 6.16329 6.27458 6.37959 6.45030 6.53238 6.60642 6.67235 6.78226 6.95537 7.22709 7.73461 7.95504 8.01376 8.11955 8.51808 9.13650 9.70573 11.20503 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.041021 B = 0.009945 C = 0.009289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 682.406332 B = 2814.731257 C = 3013.561738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.117 4.117 3 C 0.092 3.908 4 H 0.044 0.956 5 C -0.149 4.149 6 C -0.115 4.115 7 C -0.121 4.121 8 H 0.063 0.937 9 C 0.033 3.967 10 C -0.514 4.514 11 H 0.052 0.948 12 C 0.057 3.943 13 N -0.896 5.896 14 Si 0.888 3.112 15 H -0.278 1.278 16 H -0.288 1.288 17 H -0.277 1.277 18 C 0.079 3.921 19 O -0.367 6.367 20 H 0.046 0.954 21 H 0.063 0.937 22 H 0.048 0.952 23 H 0.072 0.928 24 H 0.067 0.933 25 H 0.080 0.920 26 H 0.057 0.943 27 H 0.060 0.940 28 H 0.045 0.955 29 H 0.011 0.989 30 H 0.029 0.971 31 H 0.259 0.741 32 H 0.024 0.976 33 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.480 -1.061 10.194 11.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.154 4.154 3 C 0.034 3.966 4 H 0.062 0.938 5 C -0.187 4.187 6 C -0.153 4.153 7 C -0.139 4.139 8 H 0.081 0.919 9 C -0.004 4.004 10 C -0.552 4.552 11 H 0.070 0.930 12 C -0.143 4.143 13 N -0.535 5.535 14 Si 0.716 3.284 15 H -0.204 1.204 16 H -0.214 1.214 17 H -0.203 1.203 18 C 0.003 3.997 19 O -0.286 6.286 20 H 0.066 0.934 21 H 0.082 0.918 22 H 0.067 0.933 23 H 0.091 0.909 24 H 0.086 0.914 25 H 0.099 0.901 26 H 0.075 0.925 27 H 0.079 0.921 28 H 0.064 0.936 29 H 0.029 0.971 30 H 0.047 0.953 31 H 0.069 0.931 32 H 0.042 0.958 33 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -5.491 -1.278 9.922 11.412 hybrid contribution 0.060 0.646 -0.737 0.982 sum -5.431 -0.632 9.185 10.689 Atomic orbital electron populations 1.21702 0.95773 1.00902 1.02073 1.21532 0.96222 0.95274 1.02376 1.21994 0.93666 0.93379 0.87568 0.93809 1.22203 0.96431 0.98167 1.01882 1.21626 1.00530 0.95416 0.97678 1.21855 0.95762 1.00177 0.96154 0.91858 1.19070 0.95050 0.96085 0.90159 1.21194 1.31568 1.10999 0.91457 0.92953 1.24979 0.95328 0.95055 0.98981 1.69950 1.35877 1.22105 1.25616 0.86725 0.78770 0.79625 0.83258 1.20417 1.21393 1.20276 1.22527 0.94569 0.81913 1.00705 1.87957 1.77974 1.25347 1.37304 0.93448 0.91754 0.93284 0.90891 0.91411 0.90117 0.92466 0.92140 0.93611 0.97101 0.95315 0.93126 0.95784 0.88354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.94 9.81 37.16 0.36 -1.57 16 2 C -0.12 -1.70 5.64 -26.73 -0.15 -1.85 16 3 C 0.09 1.54 2.64 -26.68 -0.07 1.47 16 4 H 0.04 0.68 8.14 -51.93 -0.42 0.25 16 5 C -0.15 -2.54 5.06 -26.59 -0.13 -2.68 16 6 C -0.11 -2.04 5.53 -26.55 -0.15 -2.19 16 7 C -0.12 -2.54 2.64 -90.48 -0.24 -2.77 16 8 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 9 C 0.03 0.87 3.97 -27.88 -0.11 0.76 16 10 C -0.51 -14.65 8.38 -34.44 -0.29 -14.94 16 11 H 0.05 1.44 7.07 -52.49 -0.37 1.07 16 12 C 0.06 1.67 5.46 -17.82 -0.10 1.58 16 13 N -0.90 -27.44 13.29 55.43 0.74 -26.70 16 14 Si 0.89 22.08 29.54 -169.99 -5.02 17.06 16 15 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 16 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 17 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 18 C 0.08 1.58 6.10 37.21 0.23 1.80 16 19 O -0.37 -7.50 9.29 -35.23 -0.33 -7.83 16 20 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 21 H 0.06 0.95 7.82 -51.93 -0.41 0.54 16 22 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 23 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 24 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 25 H 0.08 1.58 6.73 -51.93 -0.35 1.23 16 26 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 27 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 28 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.03 0.81 6.26 -51.93 -0.32 0.49 16 31 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 32 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.10 2.09 6.89 -51.93 -0.36 1.73 16 LS Contribution 261.30 15.07 3.94 3.94 Total: -1.00 -30.46 261.30 -6.92 -37.38 By element: Atomic # 1 Polarization: 2.15 SS G_CDS: -5.60 Total: -3.45 kcal Atomic # 6 Polarization: -19.75 SS G_CDS: -0.65 Total: -20.40 kcal Atomic # 7 Polarization: -27.44 SS G_CDS: 0.74 Total: -26.70 kcal Atomic # 8 Polarization: -7.50 SS G_CDS: -0.33 Total: -7.83 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.06 kcal Total LS contribution 3.94 Total: 3.94 kcal Total: -30.46 -6.92 -37.38 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259674730.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.397 kcal (2) G-P(sol) polarization free energy of solvation -30.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.377 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds