Wall clock time and date at job start Mon Mar 30 2020 02:16:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53001 * 109.46848 * 2 1 4 4 H 1.08992 * 109.48192 * 54.97698 * 3 2 1 5 5 C 1.53096 * 109.48000 * 175.00181 * 3 2 1 6 6 C 1.53178 * 109.16278 * 177.60185 * 5 3 2 7 7 C 1.53178 * 109.03511 * 303.01594 * 6 5 3 8 8 H 1.08997 * 109.57176 * 176.91900 * 7 6 5 9 9 C 1.53001 * 109.52490 * 297.07853 * 7 6 5 10 10 C 1.50703 * 109.47095 * 184.68631 * 9 7 6 11 11 H 1.07997 * 119.99925 * 0.02562 * 10 9 7 12 12 C 1.37873 * 119.99702 * 179.97438 * 10 9 7 13 13 N 1.31510 * 120.00490 * 0.02562 * 12 10 9 14 14 Si 1.86803 * 119.99741 * 180.02562 * 12 10 9 15 15 H 1.48500 * 109.47206 * 60.00135 * 14 12 10 16 16 H 1.48500 * 109.47234 * 180.02562 * 14 12 10 17 17 H 1.48501 * 109.47258 * 300.00136 * 14 12 10 18 18 C 1.53093 * 109.16255 * 56.98447 * 7 6 5 19 19 O 1.42904 * 109.42351 * 302.38111 * 18 7 6 20 20 H 1.09000 * 109.47259 * 300.00152 * 1 2 3 21 21 H 1.09002 * 109.46702 * 60.00193 * 1 2 3 22 22 H 1.08996 * 109.46592 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.46972 * 240.00313 * 2 1 3 24 24 H 1.08999 * 109.47413 * 119.99966 * 2 1 3 25 25 H 1.08999 * 109.52155 * 57.69394 * 5 3 2 26 26 H 1.09004 * 109.51758 * 297.50939 * 5 3 2 27 27 H 1.09002 * 109.54068 * 183.15004 * 6 5 3 28 28 H 1.08996 * 109.54450 * 62.88578 * 6 5 3 29 29 H 1.09005 * 109.46859 * 304.68659 * 9 7 6 30 30 H 1.08991 * 109.47346 * 64.68424 * 9 7 6 31 31 H 0.96998 * 120.00300 * 180.02562 * 13 12 10 32 32 H 1.09002 * 109.48198 * 62.37219 * 18 7 6 33 33 H 1.08999 * 109.48029 * 182.39833 * 18 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6052 1.9818 0.8415 5 6 3.5658 1.4447 0.1257 6 6 4.0733 2.8886 0.0647 7 6 3.5968 3.5309 -1.2417 8 1 3.9068 4.5755 -1.2694 9 6 4.2066 2.7850 -2.4303 10 6 3.8307 3.4865 -3.7101 11 1 3.2184 4.3756 -3.6787 12 6 4.2692 2.9937 -4.9208 13 7 5.0151 1.9113 -4.9589 14 14 3.8038 3.8636 -6.5070 15 1 4.3201 5.2557 -6.4780 16 1 4.3955 3.1396 -7.6606 17 1 2.3252 3.8869 -6.6434 18 6 2.0699 3.4482 -1.3147 19 8 1.6630 2.0815 -1.2217 20 1 -0.3634 0.5139 0.8900 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3632 -1.0277 0.0005 23 1 1.8934 -0.5138 -0.8900 24 1 1.8935 -0.5138 0.8900 25 1 3.9996 0.8711 -0.6934 26 1 3.8534 0.9973 1.0772 27 1 5.1628 2.8938 0.0975 28 1 3.6791 3.4498 0.9119 29 1 5.2920 2.7680 -2.3306 30 1 3.8277 1.7633 -2.4512 31 1 5.3239 1.5649 -5.8107 32 1 1.6354 4.0138 -0.4904 33 1 1.7281 3.8655 -2.2618 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259674730.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:19 Heat of formation + Delta-G solvation = -98.194668 kcal Electronic energy + Delta-G solvation = -13314.386181 eV Core-core repulsion = 11145.060083 eV Total energy + Delta-G solvation = -2169.326098 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.54824 -36.10848 -34.61060 -34.30968 -31.41326 -28.73347 -26.10299 -25.34113 -23.63943 -22.10124 -19.88233 -18.53946 -17.16633 -16.89098 -16.49376 -15.60893 -15.20532 -14.79805 -14.45653 -14.16215 -14.01990 -13.43822 -13.31706 -12.97760 -12.71006 -12.57636 -12.33888 -12.08100 -11.84757 -11.70826 -11.62082 -11.33037 -10.93074 -10.76092 -10.48033 -10.06642 -8.15402 -6.24247 1.38457 1.42088 1.49140 2.42474 3.07039 3.17829 3.82350 4.04830 4.11348 4.22964 4.28631 4.37913 4.46383 4.60349 4.65014 4.85362 4.88905 4.95012 5.07673 5.12063 5.17223 5.20870 5.30191 5.35202 5.46640 5.51398 5.57701 5.79401 5.93631 6.30760 6.58486 6.92058 7.43046 8.96513 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.041021 B = 0.009945 C = 0.009289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 682.406332 B = 2814.731257 C = 3013.561738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.117 4.117 3 C 0.085 3.915 4 H 0.071 0.929 5 C -0.147 4.147 6 C -0.112 4.112 7 C -0.119 4.119 8 H 0.066 0.934 9 C 0.044 3.956 10 C -0.531 4.531 11 H 0.060 0.940 12 C -0.003 4.003 13 N -0.936 5.936 14 Si 0.960 3.040 15 H -0.266 1.266 16 H -0.285 1.285 17 H -0.269 1.269 18 C 0.082 3.918 19 O -0.396 6.396 20 H 0.065 0.935 21 H 0.040 0.960 22 H 0.065 0.935 23 H 0.045 0.955 24 H 0.098 0.902 25 H 0.041 0.959 26 H 0.092 0.908 27 H 0.055 0.945 28 H 0.081 0.919 29 H -0.022 1.022 30 H -0.003 1.003 31 H 0.260 0.740 32 H 0.062 0.938 33 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.640 -0.254 11.589 13.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.154 4.154 3 C 0.028 3.972 4 H 0.089 0.911 5 C -0.185 4.185 6 C -0.149 4.149 7 C -0.138 4.138 8 H 0.084 0.916 9 C 0.007 3.993 10 C -0.569 4.569 11 H 0.078 0.922 12 C -0.200 4.200 13 N -0.576 5.576 14 Si 0.784 3.216 15 H -0.190 1.190 16 H -0.211 1.211 17 H -0.194 1.194 18 C 0.005 3.995 19 O -0.315 6.315 20 H 0.084 0.916 21 H 0.059 0.941 22 H 0.084 0.916 23 H 0.064 0.936 24 H 0.116 0.884 25 H 0.060 0.940 26 H 0.111 0.889 27 H 0.074 0.926 28 H 0.100 0.900 29 H -0.003 1.003 30 H 0.015 0.985 31 H 0.069 0.931 32 H 0.080 0.920 33 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -6.656 -0.462 11.330 13.149 hybrid contribution 0.442 0.353 -1.129 1.262 sum -6.215 -0.109 10.202 11.946 Atomic orbital electron populations 1.21668 0.94583 1.01989 1.01797 1.21585 0.97291 0.94002 1.02516 1.22294 0.93421 0.94548 0.86935 0.91098 1.22194 0.96740 0.97413 1.02157 1.21609 1.00451 0.96011 0.96847 1.21767 0.96705 0.99692 0.95642 0.91563 1.18871 0.93079 0.95058 0.92321 1.21664 1.31312 1.11291 0.92628 0.92177 1.25945 0.95254 0.95824 1.02999 1.70102 1.37188 1.23805 1.26552 0.85584 0.78739 0.78776 0.78455 1.19040 1.21056 1.19395 1.22438 0.93458 0.82443 1.01128 1.87928 1.78212 1.25696 1.39709 0.91563 0.94098 0.91602 0.93602 0.88407 0.94014 0.88939 0.92577 0.90030 1.00342 0.98468 0.93094 0.92032 0.90590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.47 9.81 71.98 0.71 -2.77 16 2 C -0.12 -3.21 5.64 30.60 0.17 -3.04 16 3 C 0.09 2.69 2.64 30.63 0.08 2.77 16 4 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 5 C -0.15 -4.83 5.06 30.69 0.16 -4.68 16 6 C -0.11 -3.77 5.53 30.71 0.17 -3.60 16 7 C -0.12 -4.97 2.64 -10.70 -0.03 -5.00 16 8 H 0.07 2.69 8.14 -2.39 -0.02 2.67 16 9 C 0.04 2.38 3.97 29.85 0.12 2.50 16 10 C -0.53 -30.94 8.38 25.60 0.21 -30.73 16 11 H 0.06 3.32 7.07 -2.91 -0.02 3.30 16 12 C 0.00 -0.19 5.46 84.65 0.46 0.27 16 13 N -0.94 -59.11 13.29 21.45 0.28 -58.82 16 14 Si 0.96 45.76 29.54 68.60 2.03 47.79 16 15 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 16 H -0.29 -13.34 7.11 99.48 0.71 -12.64 16 17 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 18 C 0.08 3.17 6.10 72.01 0.44 3.61 16 19 O -0.40 -16.02 9.29 -148.98 -1.38 -17.40 16 20 H 0.07 1.35 8.14 -2.39 -0.02 1.34 16 21 H 0.04 1.17 7.82 -2.39 -0.02 1.15 16 22 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 23 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 24 H 0.10 2.09 8.14 -2.39 -0.02 2.07 16 25 H 0.04 1.68 6.73 -2.39 -0.02 1.66 16 26 H 0.09 2.36 8.14 -2.39 -0.02 2.34 16 27 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 28 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 29 H -0.02 -1.30 8.14 -2.38 -0.02 -1.32 16 30 H 0.00 -0.18 6.26 -2.39 -0.01 -0.20 16 31 H 0.26 15.53 8.31 -92.71 -0.77 14.76 16 32 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 33 H 0.08 3.23 6.89 -2.39 -0.02 3.21 16 Total: -1.00 -67.55 261.30 4.47 -63.08 By element: Atomic # 1 Polarization: 4.97 SS G_CDS: 1.05 Total: 6.02 kcal Atomic # 6 Polarization: -43.15 SS G_CDS: 2.49 Total: -40.66 kcal Atomic # 7 Polarization: -59.11 SS G_CDS: 0.28 Total: -58.82 kcal Atomic # 8 Polarization: -16.02 SS G_CDS: -1.38 Total: -17.40 kcal Atomic # 14 Polarization: 45.76 SS G_CDS: 2.03 Total: 47.79 kcal Total: -67.55 4.47 -63.08 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259674730.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.117 kcal (2) G-P(sol) polarization free energy of solvation -67.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.077 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds