Wall clock time and date at job start Mon Mar 30 2020 02:27:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08999 * 109.48111 * 2 1 4 4 C 1.53095 * 109.48372 * 239.96551 * 2 1 3 5 5 C 1.53176 * 109.16144 * 182.40864 * 4 2 1 6 6 C 1.53177 * 109.04946 * 56.97326 * 5 4 2 7 7 H 1.09000 * 109.50878 * 62.93431 * 6 5 4 8 8 C 1.52995 * 109.53201 * 183.12660 * 6 5 4 9 9 C 1.50706 * 109.46779 * 294.68776 * 8 6 5 10 10 H 1.07990 * 120.00170 * 0.02562 * 9 8 6 11 11 C 1.37882 * 119.99567 * 180.02562 * 9 8 6 12 12 N 1.31512 * 120.00221 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 119.99605 * 180.02562 * 11 9 8 14 14 H 1.48497 * 109.47230 * 0.02562 * 13 11 9 15 15 H 1.48501 * 109.47012 * 120.00320 * 13 11 9 16 16 H 1.48507 * 109.47186 * 239.99816 * 13 11 9 17 17 C 1.53089 * 109.16089 * 303.03717 * 6 5 4 18 18 H 1.09005 * 109.48515 * 297.59860 * 17 6 5 19 19 C 1.53006 * 109.47962 * 177.58040 * 17 6 5 20 20 O 1.42901 * 109.48072 * 120.02103 * 2 1 3 21 21 H 1.09000 * 109.47566 * 299.97660 * 1 2 3 22 22 H 1.09003 * 109.47470 * 59.98038 * 1 2 3 23 23 H 1.08998 * 109.46948 * 179.97438 * 1 2 3 24 24 H 1.08993 * 109.52069 * 302.31076 * 4 2 1 25 25 H 1.09001 * 109.52141 * 62.50308 * 4 2 1 26 26 H 1.09006 * 109.54222 * 176.84884 * 5 4 2 27 27 H 1.09003 * 109.54329 * 297.02009 * 5 4 2 28 28 H 1.08999 * 109.47605 * 54.69058 * 8 6 5 29 29 H 1.09006 * 109.47118 * 174.69695 * 8 6 5 30 30 H 0.97001 * 119.99752 * 180.02562 * 12 11 9 31 31 H 1.09001 * 109.47002 * 300.01886 * 19 17 6 32 32 H 1.08993 * 109.46955 * 60.02323 * 19 17 6 33 33 H 1.09000 * 109.47050 * 180.02562 * 19 17 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0406 -0.7224 -1.2495 5 6 3.5711 -0.7709 -1.2120 6 6 4.0179 -1.4598 0.0812 7 1 3.6617 -2.4899 0.0866 8 6 5.5454 -1.4449 0.1672 9 6 6.1192 -2.2869 -0.9432 10 1 5.4604 -2.7826 -1.6407 11 6 7.4854 -2.4243 -1.0685 12 7 8.2877 -1.8211 -0.2188 13 14 8.1967 -3.4674 -2.4453 14 1 7.0912 -4.0334 -3.2592 15 1 9.0641 -2.6247 -3.3071 16 1 9.0005 -4.5727 -1.8643 17 6 3.4307 -0.7091 1.2792 18 1 3.8191 0.3093 1.2961 19 6 3.8227 -1.4262 2.5727 20 8 2.0065 -0.6740 1.1665 21 1 -0.3634 0.5135 0.8902 22 1 -0.3634 0.5141 -0.8898 23 1 -0.3633 -1.0277 -0.0005 24 1 1.6444 -1.7376 -1.2707 25 1 1.7149 -0.1845 -2.1399 26 1 3.9393 -1.3328 -2.0704 27 1 3.9690 0.2434 -1.2424 28 1 5.9049 -0.4206 0.0695 29 1 5.8590 -1.8499 1.1294 30 1 9.2488 -1.9175 -0.3072 31 1 3.4341 -2.4444 2.5557 32 1 4.9089 -1.4531 2.6583 33 1 3.4041 -0.8918 3.4255 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259677775.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:27 Heat of formation + Delta-G solvation = -80.599878 kcal Electronic energy + Delta-G solvation = -13218.973096 eV Core-core repulsion = 11050.409965 eV Total energy + Delta-G solvation = -2168.563131 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -39.16775 -34.59151 -33.21496 -32.21361 -29.22134 -28.23447 -24.99753 -22.74541 -21.96368 -20.66007 -19.26289 -16.59665 -15.74861 -14.98416 -14.40550 -14.17049 -13.90794 -13.35931 -12.54922 -12.36972 -12.23860 -12.05809 -11.66328 -11.57828 -11.29394 -11.12634 -10.76928 -10.64128 -10.44024 -10.26518 -9.98490 -9.54436 -9.35892 -9.07625 -8.54299 -8.32820 -5.99479 -4.00601 3.30763 3.38553 3.42462 4.14196 4.46572 5.10848 5.28700 5.35473 5.43337 5.49225 5.62721 5.79247 5.82465 5.86597 5.97370 5.98461 6.20703 6.29991 6.38016 6.41005 6.49985 6.63816 6.72151 6.95370 7.05826 7.09241 7.67432 7.78280 7.85214 8.00255 8.44540 9.05581 9.62902 11.11914 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.051203 B = 0.009169 C = 0.008138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 546.709923 B = 3052.880679 C = 3439.943681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.088 3.912 3 H 0.050 0.950 4 C -0.150 4.150 5 C -0.107 4.107 6 C -0.107 4.107 7 H 0.064 0.936 8 C 0.027 3.973 9 C -0.513 4.513 10 H 0.056 0.944 11 C 0.056 3.944 12 N -0.896 5.896 13 Si 0.889 3.111 14 H -0.273 1.273 15 H -0.285 1.285 16 H -0.284 1.284 17 C 0.090 3.910 18 H 0.049 0.951 19 C -0.141 4.141 20 O -0.387 6.387 21 H 0.057 0.943 22 H 0.065 0.935 23 H 0.060 0.940 24 H 0.065 0.935 25 H 0.061 0.939 26 H 0.073 0.927 27 H 0.054 0.946 28 H 0.015 0.985 29 H 0.023 0.977 30 H 0.259 0.741 31 H 0.057 0.943 32 H 0.081 0.919 33 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.239 3.139 0.584 11.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.030 3.970 3 H 0.068 0.932 4 C -0.188 4.188 5 C -0.145 4.145 6 C -0.126 4.126 7 H 0.082 0.918 8 C -0.010 4.010 9 C -0.552 4.552 10 H 0.074 0.926 11 C -0.145 4.145 12 N -0.536 5.536 13 Si 0.717 3.283 14 H -0.198 1.198 15 H -0.211 1.211 16 H -0.210 1.210 17 C 0.033 3.967 18 H 0.067 0.933 19 C -0.198 4.198 20 O -0.307 6.307 21 H 0.076 0.924 22 H 0.084 0.916 23 H 0.079 0.921 24 H 0.083 0.917 25 H 0.080 0.920 26 H 0.091 0.909 27 H 0.072 0.928 28 H 0.033 0.967 29 H 0.041 0.959 30 H 0.069 0.931 31 H 0.076 0.924 32 H 0.100 0.900 33 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -11.179 3.078 0.761 11.620 hybrid contribution 0.751 -0.435 -1.015 1.335 sum -10.428 2.643 -0.254 10.761 Atomic orbital electron populations 1.21754 0.94010 1.02495 1.01687 1.21969 0.94081 0.94934 0.86036 0.93169 1.22282 0.98131 1.01053 0.97360 1.21566 0.92534 1.00776 0.99604 1.21833 0.99804 0.98445 0.92504 0.91794 1.19175 0.87224 0.97162 0.97434 1.21272 0.91360 1.29536 1.13005 0.92604 1.25014 0.97349 0.95943 0.96190 1.69969 1.03324 1.43722 1.36578 0.86583 0.79137 0.80276 0.82303 1.19789 1.21088 1.21045 1.22224 0.79605 0.98487 0.96376 0.93262 1.21796 1.02344 1.00374 0.95293 1.87822 1.22324 1.78060 1.42530 0.92356 0.91608 0.92083 0.91650 0.91998 0.90858 0.92761 0.96683 0.95902 0.93113 0.92357 0.90043 0.93192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.73 9.56 37.15 0.36 -1.38 16 2 C 0.09 1.35 3.26 -26.68 -0.09 1.26 16 3 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 4 C -0.15 -2.38 5.42 -26.59 -0.14 -2.53 16 5 C -0.11 -2.07 5.07 -26.55 -0.13 -2.20 16 6 C -0.11 -2.26 1.83 -90.48 -0.17 -2.43 16 7 H 0.06 1.41 8.14 -51.93 -0.42 0.99 16 8 C 0.03 0.69 4.28 -27.88 -0.12 0.57 16 9 C -0.51 -14.34 8.46 -34.44 -0.29 -14.63 16 10 H 0.06 1.53 7.08 -52.49 -0.37 1.16 16 11 C 0.06 1.59 5.46 -17.82 -0.10 1.50 16 12 N -0.90 -26.80 13.29 55.43 0.74 -26.06 16 13 Si 0.89 21.67 29.54 -169.99 -5.02 16.65 16 14 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 15 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 16 H -0.28 -6.88 7.11 56.52 0.40 -6.47 16 17 C 0.09 1.70 2.76 -26.68 -0.07 1.63 16 18 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 19 C -0.14 -2.47 9.28 37.16 0.34 -2.13 16 20 O -0.39 -6.98 10.05 -35.23 -0.35 -7.34 16 21 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 22 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 23 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 24 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 25 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 26 H 0.07 1.50 7.08 -51.93 -0.37 1.13 16 27 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 28 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.02 0.61 6.26 -51.93 -0.33 0.28 16 30 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 31 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 32 H 0.08 1.50 6.39 -51.93 -0.33 1.17 16 33 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 LS Contribution 262.41 15.07 3.95 3.95 Total: -1.00 -29.57 262.41 -6.70 -36.28 By element: Atomic # 1 Polarization: 2.47 SS G_CDS: -5.60 Total: -3.13 kcal Atomic # 6 Polarization: -19.93 SS G_CDS: -0.41 Total: -20.35 kcal Atomic # 7 Polarization: -26.80 SS G_CDS: 0.74 Total: -26.06 kcal Atomic # 8 Polarization: -6.98 SS G_CDS: -0.35 Total: -7.34 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Total LS contribution 3.95 Total: 3.95 kcal Total: -29.57 -6.70 -36.28 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259677775.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.324 kcal (2) G-P(sol) polarization free energy of solvation -29.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.276 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds