Wall clock time and date at job start Mon Mar 30 2020 02:27:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08999 * 109.48111 * 2 1 4 4 C 1.53095 * 109.48372 * 239.96551 * 2 1 3 5 5 C 1.53176 * 109.16144 * 182.40864 * 4 2 1 6 6 C 1.53177 * 109.04946 * 56.97326 * 5 4 2 7 7 H 1.09000 * 109.50878 * 62.93431 * 6 5 4 8 8 C 1.52995 * 109.53201 * 183.12660 * 6 5 4 9 9 C 1.50706 * 109.46779 * 294.68776 * 8 6 5 10 10 H 1.07990 * 120.00170 * 0.02562 * 9 8 6 11 11 C 1.37882 * 119.99567 * 180.02562 * 9 8 6 12 12 N 1.31512 * 120.00221 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 119.99605 * 180.02562 * 11 9 8 14 14 H 1.48497 * 109.47230 * 0.02562 * 13 11 9 15 15 H 1.48501 * 109.47012 * 120.00320 * 13 11 9 16 16 H 1.48507 * 109.47186 * 239.99816 * 13 11 9 17 17 C 1.53089 * 109.16089 * 303.03717 * 6 5 4 18 18 H 1.09005 * 109.48515 * 297.59860 * 17 6 5 19 19 C 1.53006 * 109.47962 * 177.58040 * 17 6 5 20 20 O 1.42901 * 109.48072 * 120.02103 * 2 1 3 21 21 H 1.09000 * 109.47566 * 299.97660 * 1 2 3 22 22 H 1.09003 * 109.47470 * 59.98038 * 1 2 3 23 23 H 1.08998 * 109.46948 * 179.97438 * 1 2 3 24 24 H 1.08993 * 109.52069 * 302.31076 * 4 2 1 25 25 H 1.09001 * 109.52141 * 62.50308 * 4 2 1 26 26 H 1.09006 * 109.54222 * 176.84884 * 5 4 2 27 27 H 1.09003 * 109.54329 * 297.02009 * 5 4 2 28 28 H 1.08999 * 109.47605 * 54.69058 * 8 6 5 29 29 H 1.09006 * 109.47118 * 174.69695 * 8 6 5 30 30 H 0.97001 * 119.99752 * 180.02562 * 12 11 9 31 31 H 1.09001 * 109.47002 * 300.01886 * 19 17 6 32 32 H 1.08993 * 109.46955 * 60.02323 * 19 17 6 33 33 H 1.09000 * 109.47050 * 180.02562 * 19 17 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0406 -0.7224 -1.2495 5 6 3.5711 -0.7709 -1.2120 6 6 4.0179 -1.4598 0.0812 7 1 3.6617 -2.4899 0.0866 8 6 5.5454 -1.4449 0.1672 9 6 6.1192 -2.2869 -0.9432 10 1 5.4604 -2.7826 -1.6407 11 6 7.4854 -2.4243 -1.0685 12 7 8.2877 -1.8211 -0.2188 13 14 8.1967 -3.4674 -2.4453 14 1 7.0912 -4.0334 -3.2592 15 1 9.0641 -2.6247 -3.3071 16 1 9.0005 -4.5727 -1.8643 17 6 3.4307 -0.7091 1.2792 18 1 3.8191 0.3093 1.2961 19 6 3.8227 -1.4262 2.5727 20 8 2.0065 -0.6740 1.1665 21 1 -0.3634 0.5135 0.8902 22 1 -0.3634 0.5141 -0.8898 23 1 -0.3633 -1.0277 -0.0005 24 1 1.6444 -1.7376 -1.2707 25 1 1.7149 -0.1845 -2.1399 26 1 3.9393 -1.3328 -2.0704 27 1 3.9690 0.2434 -1.2424 28 1 5.9049 -0.4206 0.0695 29 1 5.8590 -1.8499 1.1294 30 1 9.2488 -1.9175 -0.3072 31 1 3.4341 -2.4444 2.5557 32 1 4.9089 -1.4531 2.6583 33 1 3.4041 -0.8918 3.4255 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259677775.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:26 Heat of formation + Delta-G solvation = -97.905744 kcal Electronic energy + Delta-G solvation = -13219.723535 eV Core-core repulsion = 11050.409965 eV Total energy + Delta-G solvation = -2169.313569 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.62014 -36.33271 -34.56286 -34.22255 -30.48690 -30.06190 -26.76945 -24.33650 -23.57337 -22.05346 -20.88645 -18.61720 -17.27952 -16.69507 -16.12190 -15.60462 -15.41198 -14.90095 -14.11660 -14.03385 -13.78488 -13.50482 -13.09673 -12.95635 -12.82173 -12.78809 -12.49280 -12.41474 -12.03386 -11.79839 -11.62779 -11.32571 -11.03811 -10.98286 -10.52165 -10.10749 -8.18872 -6.27790 1.38354 1.39122 1.51701 2.40575 2.82436 3.14434 3.89845 3.90374 4.05414 4.06287 4.30438 4.36137 4.51132 4.61983 4.70488 4.77686 4.84002 4.95360 5.02601 5.10773 5.13253 5.18791 5.27927 5.33437 5.37060 5.43136 5.57553 5.77890 5.85880 6.26887 6.43114 6.87357 7.40219 8.93062 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.051203 B = 0.009169 C = 0.008138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 546.709923 B = 3052.880679 C = 3439.943681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.077 3.923 3 H 0.055 0.945 4 C -0.142 4.142 5 C -0.107 4.107 6 C -0.101 4.101 7 H 0.052 0.948 8 C 0.035 3.965 9 C -0.530 4.530 10 H 0.057 0.943 11 C 0.000 4.000 12 N -0.933 5.933 13 Si 0.959 3.041 14 H -0.264 1.264 15 H -0.279 1.279 16 H -0.279 1.279 17 C 0.095 3.905 18 H 0.047 0.953 19 C -0.138 4.138 20 O -0.393 6.393 21 H 0.065 0.935 22 H 0.091 0.909 23 H 0.059 0.941 24 H 0.064 0.936 25 H 0.090 0.910 26 H 0.055 0.945 27 H 0.049 0.951 28 H -0.011 1.011 29 H 0.003 0.997 30 H 0.262 0.738 31 H 0.058 0.942 32 H 0.064 0.936 33 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.725 3.116 -0.274 13.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.019 3.981 3 H 0.073 0.927 4 C -0.179 4.179 5 C -0.145 4.145 6 C -0.120 4.120 7 H 0.070 0.930 8 C -0.002 4.002 9 C -0.568 4.568 10 H 0.075 0.925 11 C -0.197 4.197 12 N -0.574 5.574 13 Si 0.784 3.216 14 H -0.188 1.188 15 H -0.204 1.204 16 H -0.205 1.205 17 C 0.038 3.962 18 H 0.065 0.935 19 C -0.195 4.195 20 O -0.313 6.313 21 H 0.084 0.916 22 H 0.110 0.890 23 H 0.078 0.922 24 H 0.083 0.917 25 H 0.108 0.892 26 H 0.074 0.926 27 H 0.068 0.932 28 H 0.008 0.992 29 H 0.021 0.979 30 H 0.071 0.929 31 H 0.077 0.923 32 H 0.083 0.917 33 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -12.685 3.055 -0.099 13.049 hybrid contribution 1.205 -0.396 -0.738 1.467 sum -11.480 2.659 -0.837 11.814 Atomic orbital electron populations 1.21747 0.91126 1.03004 1.03375 1.22294 0.96300 0.94759 0.84707 0.92655 1.22229 0.94953 1.01680 0.99061 1.21514 0.95493 0.99796 0.97666 1.21682 0.96715 0.98530 0.95035 0.92956 1.19028 0.90396 0.94960 0.95850 1.21640 0.91865 1.29738 1.13560 0.92489 1.25907 0.97835 0.97227 0.98751 1.70092 1.03722 1.45146 1.38424 0.85484 0.78437 0.78521 0.79138 1.18801 1.20447 1.20454 1.22051 0.80454 0.97979 0.95708 0.93518 1.21744 1.01373 1.00675 0.95711 1.87826 1.21058 1.78526 1.43918 0.91641 0.89014 0.92156 0.91725 0.89159 0.92577 0.93215 0.99239 0.97852 0.92871 0.92300 0.91689 0.90835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.83 9.56 71.98 0.69 -2.14 16 2 C 0.08 2.17 3.26 30.62 0.10 2.27 16 3 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 4 C -0.14 -4.18 5.42 30.69 0.17 -4.01 16 5 C -0.11 -4.09 5.07 30.71 0.16 -3.94 16 6 C -0.10 -4.31 1.83 -10.71 -0.02 -4.33 16 7 H 0.05 2.34 8.14 -2.39 -0.02 2.32 16 8 C 0.03 1.83 4.28 29.85 0.13 1.96 16 9 C -0.53 -30.14 8.46 25.60 0.22 -29.93 16 10 H 0.06 3.15 7.08 -2.92 -0.02 3.13 16 11 C 0.00 0.01 5.46 84.66 0.46 0.48 16 12 N -0.93 -56.83 13.29 21.45 0.28 -56.55 16 13 Si 0.96 44.60 29.54 68.60 2.03 46.63 16 14 H -0.26 -11.76 7.11 99.48 0.71 -11.06 16 15 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 16 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 17 C 0.10 3.58 2.76 30.63 0.08 3.66 16 18 H 0.05 1.77 8.14 -2.38 -0.02 1.75 16 19 C -0.14 -4.81 9.28 71.98 0.67 -4.14 16 20 O -0.39 -13.51 10.05 -148.98 -1.50 -15.00 16 21 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 22 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 23 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 24 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 25 H 0.09 2.17 8.14 -2.39 -0.02 2.15 16 26 H 0.06 2.30 7.08 -2.38 -0.02 2.28 16 27 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 28 H -0.01 -0.62 8.14 -2.39 -0.02 -0.63 16 29 H 0.00 0.18 6.26 -2.38 -0.01 0.17 16 30 H 0.26 15.00 8.31 -92.71 -0.77 14.23 16 31 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 32 H 0.06 2.46 6.39 -2.39 -0.02 2.44 16 33 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 Total: -1.00 -63.23 262.41 4.51 -58.72 By element: Atomic # 1 Polarization: 5.29 SS G_CDS: 1.05 Total: 6.34 kcal Atomic # 6 Polarization: -42.78 SS G_CDS: 2.65 Total: -40.13 kcal Atomic # 7 Polarization: -56.83 SS G_CDS: 0.28 Total: -56.55 kcal Atomic # 8 Polarization: -13.51 SS G_CDS: -1.50 Total: -15.00 kcal Atomic # 14 Polarization: 44.60 SS G_CDS: 2.03 Total: 46.63 kcal Total: -63.23 4.51 -58.72 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259677775.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.187 kcal (2) G-P(sol) polarization free energy of solvation -63.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.719 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds