Wall clock time and date at job start Mon Mar 30 2020 02:06:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53003 * 109.47008 * 2 1 4 4 C 1.53003 * 109.47551 * 119.99146 * 2 1 3 5 5 H 1.09010 * 109.47319 * 59.98180 * 4 2 1 6 6 C 1.53087 * 109.48363 * 180.02562 * 4 2 1 7 7 C 1.53179 * 109.16439 * 177.60874 * 6 4 2 8 8 H 1.09002 * 109.54484 * 183.15202 * 7 6 4 9 9 C 1.50696 * 109.54458 * 62.97364 * 7 6 4 10 10 H 1.08006 * 120.00224 * 0.18498 * 9 7 6 11 11 C 1.37879 * 119.99937 * 180.17733 * 9 7 6 12 12 N 1.31521 * 119.99799 * 180.02562 * 11 9 7 13 13 Si 1.86791 * 120.00111 * 0.02562 * 11 9 7 14 14 H 1.48497 * 109.47100 * 89.99889 * 13 11 9 15 15 H 1.48504 * 109.47077 * 209.99928 * 13 11 9 16 16 H 1.48495 * 109.47184 * 329.99758 * 13 11 9 17 17 C 1.53177 * 109.10692 * 303.06406 * 7 6 4 18 18 C 1.53104 * 109.15693 * 56.84876 * 17 7 6 19 19 O 1.42899 * 109.49185 * 299.95714 * 4 2 1 20 20 H 1.09005 * 109.47283 * 299.99788 * 1 2 3 21 21 H 1.08999 * 109.47487 * 60.00599 * 1 2 3 22 22 H 1.09007 * 109.46591 * 180.02562 * 1 2 3 23 23 H 1.08997 * 109.47423 * 239.99941 * 2 1 3 24 24 H 1.08994 * 109.47664 * 180.02562 * 3 2 1 25 25 H 1.09004 * 109.46928 * 300.00182 * 3 2 1 26 26 H 1.09001 * 109.47503 * 59.99537 * 3 2 1 27 27 H 1.08997 * 109.52133 * 57.69758 * 6 4 2 28 28 H 1.09010 * 109.57321 * 297.54271 * 6 4 2 29 29 H 0.96999 * 119.99929 * 180.02562 * 12 11 9 30 30 H 1.08999 * 109.51892 * 176.84392 * 17 7 6 31 31 H 1.09000 * 109.52369 * 297.02547 * 17 7 6 32 32 H 1.09002 * 109.48063 * 182.49832 * 18 17 7 33 33 H 1.09000 * 109.40725 * 62.50479 * 18 17 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7211 1.2493 5 1 1.6765 -1.7487 1.2497 6 6 3.5710 -0.7206 1.2499 7 6 4.0736 -1.3910 2.5322 8 1 5.1621 -1.3442 2.5656 9 6 3.6300 -2.8310 2.5554 10 1 3.0501 -3.2308 1.7366 11 6 3.9645 -3.6382 3.6220 12 7 3.5777 -4.8951 3.6421 13 14 4.9669 -2.9468 5.0384 14 1 4.0519 -2.3898 6.0668 15 1 5.7868 -4.0293 5.6393 16 1 5.8589 -1.8716 4.5350 17 6 3.4917 -0.6559 3.7435 18 6 1.9638 -0.6571 3.6455 19 8 1.5649 -0.0470 2.4163 20 1 -0.3634 0.5138 0.8900 21 1 -0.3634 0.5137 -0.8900 22 1 -0.3633 -1.0278 0.0005 23 1 1.8933 -0.5138 -0.8899 24 1 3.1299 1.4427 -0.0005 25 1 1.6766 1.9564 -0.8900 26 1 1.6766 1.9565 0.8899 27 1 3.9349 0.3060 1.2087 28 1 3.9366 -1.2717 0.3833 29 1 3.8127 -5.4630 4.3925 30 1 3.7998 -1.1614 4.6588 31 1 3.8540 0.3720 3.7544 32 1 1.5455 -0.0969 4.4818 33 1 1.5996 -1.6839 3.6771 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259773245.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:31 Heat of formation + Delta-G solvation = -66.895766 kcal Electronic energy + Delta-G solvation = -13675.695985 eV Core-core repulsion = 11507.727109 eV Total energy + Delta-G solvation = -2167.968876 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -38.96475 -34.89196 -33.71790 -31.52391 -29.31981 -26.87058 -25.63027 -23.43250 -22.68735 -19.63406 -18.82876 -16.27677 -15.57897 -15.28033 -14.61543 -14.19376 -13.75998 -13.16778 -12.86199 -12.69128 -12.51342 -12.01151 -11.74400 -11.64973 -11.17735 -11.00922 -10.53199 -10.45557 -10.20136 -10.00359 -9.79548 -9.51607 -9.32720 -8.94152 -8.59410 -8.29584 -6.09271 -4.07639 3.23741 3.35962 3.37895 4.38869 4.56611 5.20258 5.30584 5.37810 5.47190 5.91662 5.96176 6.00258 6.03328 6.08100 6.12455 6.18649 6.29654 6.34180 6.36493 6.50830 6.60366 6.61596 6.75445 6.84644 6.94128 7.06537 7.14039 7.37883 7.77843 8.10993 8.50081 8.93898 9.53692 11.03627 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.052571 B = 0.011733 C = 0.011206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 532.488065 B = 2385.879579 C = 2498.061600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.090 4.090 3 C -0.142 4.142 4 C 0.104 3.896 5 H 0.067 0.933 6 C -0.127 4.127 7 C 0.006 3.994 8 H 0.028 0.972 9 C -0.510 4.510 10 H 0.074 0.926 11 C 0.069 3.931 12 N -0.900 5.900 13 Si 0.885 3.115 14 H -0.279 1.279 15 H -0.298 1.298 16 H -0.267 1.267 17 C -0.153 4.153 18 C 0.075 3.925 19 O -0.387 6.387 20 H 0.061 0.939 21 H 0.045 0.955 22 H 0.051 0.949 23 H 0.074 0.926 24 H 0.055 0.945 25 H 0.043 0.957 26 H 0.060 0.940 27 H 0.048 0.952 28 H 0.060 0.940 29 H 0.263 0.737 30 H 0.052 0.948 31 H 0.042 0.958 32 H 0.069 0.931 33 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.837 9.629 -3.638 10.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.108 4.108 3 C -0.199 4.199 4 C 0.046 3.954 5 H 0.085 0.915 6 C -0.165 4.165 7 C -0.012 4.012 8 H 0.046 0.954 9 C -0.548 4.548 10 H 0.092 0.908 11 C -0.132 4.132 12 N -0.539 5.539 13 Si 0.715 3.285 14 H -0.206 1.206 15 H -0.225 1.225 16 H -0.192 1.192 17 C -0.191 4.191 18 C -0.001 4.001 19 O -0.307 6.307 20 H 0.080 0.920 21 H 0.064 0.936 22 H 0.070 0.930 23 H 0.092 0.908 24 H 0.074 0.926 25 H 0.062 0.938 26 H 0.079 0.921 27 H 0.067 0.933 28 H 0.079 0.921 29 H 0.073 0.927 30 H 0.070 0.930 31 H 0.061 0.939 32 H 0.088 0.912 33 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -2.947 9.621 -3.554 10.671 hybrid contribution 0.796 -0.088 0.999 1.280 sum -2.151 9.533 -2.555 10.101 Atomic orbital electron populations 1.21750 0.95364 1.01495 1.01253 1.21187 0.95939 0.96675 0.97038 1.21797 1.00959 0.96052 1.01098 1.21997 0.93553 0.95534 0.84314 0.91538 1.22051 0.95662 0.99093 0.99672 1.19237 0.95975 0.95538 0.90493 0.95410 1.21035 1.34642 0.92556 1.06566 0.90763 1.25021 0.95358 0.94685 0.98152 1.69904 1.46360 1.05938 1.31670 0.86876 0.80614 0.78082 0.82880 1.20591 1.22519 1.19176 1.22452 0.97162 0.98809 1.00669 1.22348 0.94323 0.98337 0.85124 1.87686 1.75003 1.54157 1.13853 0.92023 0.93624 0.93005 0.90789 0.92645 0.93828 0.92090 0.93294 0.92126 0.92707 0.92960 0.93876 0.91248 0.91801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.04 9.05 37.16 0.34 -1.70 16 2 C -0.09 -1.42 2.81 -90.62 -0.25 -1.67 16 3 C -0.14 -2.03 8.70 37.16 0.32 -1.71 16 4 C 0.10 2.01 2.15 -26.68 -0.06 1.95 16 5 H 0.07 1.45 6.88 -51.92 -0.36 1.10 16 6 C -0.13 -2.57 4.58 -26.59 -0.12 -2.70 16 7 C 0.01 0.15 2.19 -91.59 -0.20 -0.05 16 8 H 0.03 0.68 7.20 -51.93 -0.37 0.30 16 9 C -0.51 -13.95 7.40 -34.44 -0.25 -14.21 16 10 H 0.07 2.19 7.17 -52.48 -0.38 1.82 16 11 C 0.07 1.97 5.45 -17.82 -0.10 1.87 16 12 N -0.90 -27.20 13.96 55.43 0.77 -26.43 16 13 Si 0.88 21.89 24.41 -169.99 -4.15 17.74 16 14 H -0.28 -6.69 6.84 56.52 0.39 -6.30 16 15 H -0.30 -7.40 7.11 56.52 0.40 -7.00 16 16 H -0.27 -6.39 6.53 56.52 0.37 -6.02 16 17 C -0.15 -3.37 5.14 -26.59 -0.14 -3.51 16 18 C 0.08 1.57 6.62 37.21 0.25 1.81 16 19 O -0.39 -7.78 9.06 -35.23 -0.32 -8.10 16 20 H 0.06 0.93 7.68 -51.93 -0.40 0.53 16 21 H 0.04 0.56 8.14 -51.93 -0.42 0.13 16 22 H 0.05 0.75 8.14 -51.92 -0.42 0.33 16 23 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 24 H 0.05 0.79 6.38 -51.93 -0.33 0.46 16 25 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.06 0.92 7.68 -51.93 -0.40 0.53 16 27 H 0.05 0.91 6.31 -51.93 -0.33 0.58 16 28 H 0.06 1.20 8.14 -51.92 -0.42 0.78 16 29 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 30 H 0.05 1.20 3.27 -51.93 -0.17 1.03 16 31 H 0.04 0.87 8.14 -51.93 -0.42 0.44 16 32 H 0.07 1.27 8.14 -51.93 -0.42 0.84 16 33 H 0.06 1.47 7.38 -51.93 -0.38 1.09 16 LS Contribution 247.25 15.07 3.73 3.73 Total: -1.00 -28.93 247.25 -5.45 -34.37 By element: Atomic # 1 Polarization: 3.86 SS G_CDS: -5.26 Total: -1.40 kcal Atomic # 6 Polarization: -19.69 SS G_CDS: -0.22 Total: -19.91 kcal Atomic # 7 Polarization: -27.20 SS G_CDS: 0.77 Total: -26.43 kcal Atomic # 8 Polarization: -7.78 SS G_CDS: -0.32 Total: -8.10 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -4.15 Total: 17.74 kcal Total LS contribution 3.73 Total: 3.73 kcal Total: -28.93 -5.45 -34.37 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259773245.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.524 kcal (2) G-P(sol) polarization free energy of solvation -28.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.371 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds