Wall clock time and date at job start Mon Mar 30 2020 02:06:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53003 * 109.47008 * 2 1 4 4 C 1.53003 * 109.47551 * 119.99146 * 2 1 3 5 5 H 1.09010 * 109.47319 * 59.98180 * 4 2 1 6 6 C 1.53087 * 109.48363 * 180.02562 * 4 2 1 7 7 C 1.53179 * 109.16439 * 177.60874 * 6 4 2 8 8 H 1.09002 * 109.54484 * 183.15202 * 7 6 4 9 9 C 1.50696 * 109.54458 * 62.97364 * 7 6 4 10 10 H 1.08006 * 120.00224 * 0.18498 * 9 7 6 11 11 C 1.37879 * 119.99937 * 180.17733 * 9 7 6 12 12 N 1.31521 * 119.99799 * 180.02562 * 11 9 7 13 13 Si 1.86791 * 120.00111 * 0.02562 * 11 9 7 14 14 H 1.48497 * 109.47100 * 89.99889 * 13 11 9 15 15 H 1.48504 * 109.47077 * 209.99928 * 13 11 9 16 16 H 1.48495 * 109.47184 * 329.99758 * 13 11 9 17 17 C 1.53177 * 109.10692 * 303.06406 * 7 6 4 18 18 C 1.53104 * 109.15693 * 56.84876 * 17 7 6 19 19 O 1.42899 * 109.49185 * 299.95714 * 4 2 1 20 20 H 1.09005 * 109.47283 * 299.99788 * 1 2 3 21 21 H 1.08999 * 109.47487 * 60.00599 * 1 2 3 22 22 H 1.09007 * 109.46591 * 180.02562 * 1 2 3 23 23 H 1.08997 * 109.47423 * 239.99941 * 2 1 3 24 24 H 1.08994 * 109.47664 * 180.02562 * 3 2 1 25 25 H 1.09004 * 109.46928 * 300.00182 * 3 2 1 26 26 H 1.09001 * 109.47503 * 59.99537 * 3 2 1 27 27 H 1.08997 * 109.52133 * 57.69758 * 6 4 2 28 28 H 1.09010 * 109.57321 * 297.54271 * 6 4 2 29 29 H 0.96999 * 119.99929 * 180.02562 * 12 11 9 30 30 H 1.08999 * 109.51892 * 176.84392 * 17 7 6 31 31 H 1.09000 * 109.52369 * 297.02547 * 17 7 6 32 32 H 1.09002 * 109.48063 * 182.49832 * 18 17 7 33 33 H 1.09000 * 109.40725 * 62.50479 * 18 17 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7211 1.2493 5 1 1.6765 -1.7487 1.2497 6 6 3.5710 -0.7206 1.2499 7 6 4.0736 -1.3910 2.5322 8 1 5.1621 -1.3442 2.5656 9 6 3.6300 -2.8310 2.5554 10 1 3.0501 -3.2308 1.7366 11 6 3.9645 -3.6382 3.6220 12 7 3.5777 -4.8951 3.6421 13 14 4.9669 -2.9468 5.0384 14 1 4.0519 -2.3898 6.0668 15 1 5.7868 -4.0293 5.6393 16 1 5.8589 -1.8716 4.5350 17 6 3.4917 -0.6559 3.7435 18 6 1.9638 -0.6571 3.6455 19 8 1.5649 -0.0470 2.4163 20 1 -0.3634 0.5138 0.8900 21 1 -0.3634 0.5137 -0.8900 22 1 -0.3633 -1.0278 0.0005 23 1 1.8933 -0.5138 -0.8899 24 1 3.1299 1.4427 -0.0005 25 1 1.6766 1.9564 -0.8900 26 1 1.6766 1.9565 0.8899 27 1 3.9349 0.3060 1.2087 28 1 3.9366 -1.2717 0.3833 29 1 3.8127 -5.4630 4.3925 30 1 3.7998 -1.1614 4.6588 31 1 3.8540 0.3720 3.7544 32 1 1.5455 -0.0969 4.4818 33 1 1.5996 -1.6839 3.6771 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259773245.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:31 Heat of formation + Delta-G solvation = -85.200222 kcal Electronic energy + Delta-G solvation = -13676.489726 eV Core-core repulsion = 11507.727109 eV Total energy + Delta-G solvation = -2168.762617 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.59148 -36.37932 -35.48058 -33.58384 -30.88413 -28.14232 -27.47161 -25.11949 -24.39312 -21.12604 -20.60297 -18.30798 -17.21979 -16.94973 -16.38991 -15.84213 -15.24701 -14.68266 -14.58200 -14.42377 -14.21378 -13.53115 -13.40666 -12.92908 -12.82813 -12.43872 -12.19191 -12.01715 -11.79706 -11.59093 -11.50202 -11.25455 -11.18179 -10.73719 -10.66472 -10.04999 -8.29284 -6.31425 1.27576 1.34156 1.44082 2.31432 3.01029 3.06008 3.92471 4.04243 4.22220 4.28288 4.31778 4.34654 4.56485 4.64460 4.73764 4.83707 4.88510 4.92503 5.06497 5.10666 5.14927 5.17764 5.23675 5.31841 5.37363 5.52326 5.55015 5.61268 5.74563 6.30333 6.47375 6.73848 7.32970 8.87194 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.052571 B = 0.011733 C = 0.011206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 532.488065 B = 2385.879579 C = 2498.061600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.089 4.089 3 C -0.136 4.136 4 C 0.104 3.896 5 H 0.028 0.972 6 C -0.123 4.123 7 C -0.001 4.001 8 H 0.025 0.975 9 C -0.505 4.505 10 H 0.034 0.966 11 C 0.012 3.988 12 N -0.950 5.950 13 Si 0.944 3.056 14 H -0.264 1.264 15 H -0.301 1.301 16 H -0.249 1.249 17 C -0.153 4.153 18 C 0.076 3.924 19 O -0.381 6.381 20 H 0.053 0.947 21 H 0.073 0.927 22 H 0.041 0.959 23 H 0.083 0.917 24 H 0.055 0.945 25 H 0.069 0.931 26 H 0.053 0.947 27 H 0.074 0.926 28 H 0.057 0.943 29 H 0.264 0.736 30 H 0.044 0.956 31 H 0.071 0.929 32 H 0.102 0.898 33 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.475 12.302 -3.612 13.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.107 4.107 3 C -0.194 4.194 4 C 0.046 3.954 5 H 0.046 0.954 6 C -0.161 4.161 7 C -0.020 4.020 8 H 0.043 0.957 9 C -0.543 4.543 10 H 0.052 0.948 11 C -0.185 4.185 12 N -0.590 5.590 13 Si 0.771 3.229 14 H -0.190 1.190 15 H -0.229 1.229 16 H -0.173 1.173 17 C -0.190 4.190 18 C -0.001 4.001 19 O -0.301 6.301 20 H 0.072 0.928 21 H 0.092 0.908 22 H 0.060 0.940 23 H 0.101 0.899 24 H 0.074 0.926 25 H 0.088 0.912 26 H 0.072 0.928 27 H 0.093 0.907 28 H 0.076 0.924 29 H 0.073 0.927 30 H 0.062 0.938 31 H 0.090 0.910 32 H 0.120 0.880 33 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -2.589 12.319 -3.541 13.077 hybrid contribution 0.636 -0.963 0.897 1.461 sum -1.953 11.357 -2.644 11.823 Atomic orbital electron populations 1.21723 0.94364 1.01221 1.02234 1.21217 0.96846 0.97557 0.95076 1.21752 1.00934 0.94619 1.02046 1.22011 0.93154 0.94366 0.85875 0.95378 1.22019 0.96154 1.00046 0.97868 1.19277 0.95854 0.93528 0.93312 0.95701 1.21240 1.33178 0.94812 1.05035 0.94751 1.25839 0.96740 0.94833 1.01073 1.70053 1.48521 1.07607 1.32861 0.85905 0.79426 0.77708 0.79829 1.19043 1.22884 1.17291 1.22418 0.97650 0.99923 0.99051 1.22338 0.93948 0.97207 0.86586 1.87707 1.74996 1.53649 1.13728 0.92802 0.90834 0.93981 0.89889 0.92596 0.91226 0.92824 0.90716 0.92400 0.92719 0.93777 0.91008 0.88026 0.95238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.72 9.05 71.98 0.65 -3.06 16 2 C -0.09 -2.61 2.81 -10.79 -0.03 -2.64 16 3 C -0.14 -3.43 8.70 71.98 0.63 -2.81 16 4 C 0.10 3.96 2.15 30.62 0.07 4.02 16 5 H 0.03 1.28 6.88 -2.38 -0.02 1.27 16 6 C -0.12 -4.83 4.58 30.68 0.14 -4.69 16 7 C 0.00 -0.04 2.19 -11.42 -0.03 -0.07 16 8 H 0.02 1.16 7.20 -2.39 -0.02 1.15 16 9 C -0.50 -28.31 7.40 25.60 0.19 -28.12 16 10 H 0.03 2.15 7.17 -2.91 -0.02 2.12 16 11 C 0.01 0.68 5.45 84.65 0.46 1.15 16 12 N -0.95 -59.34 13.96 21.45 0.30 -59.04 16 13 Si 0.94 44.82 24.41 68.60 1.67 46.50 16 14 H -0.26 -11.86 6.84 99.48 0.68 -11.18 16 15 H -0.30 -14.36 7.11 99.48 0.71 -13.65 16 16 H -0.25 -11.02 6.53 99.48 0.65 -10.37 16 17 C -0.15 -6.36 5.14 30.69 0.16 -6.20 16 18 C 0.08 3.05 6.62 72.02 0.48 3.53 16 19 O -0.38 -14.72 9.06 -148.98 -1.35 -16.07 16 20 H 0.05 1.52 7.68 -2.38 -0.02 1.51 16 21 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 22 H 0.04 1.19 8.14 -2.38 -0.02 1.17 16 23 H 0.08 2.30 8.14 -2.39 -0.02 2.28 16 24 H 0.06 1.39 6.38 -2.39 -0.02 1.38 16 25 H 0.07 1.41 8.14 -2.38 -0.02 1.39 16 26 H 0.05 1.44 7.68 -2.39 -0.02 1.42 16 27 H 0.07 2.56 6.31 -2.39 -0.02 2.54 16 28 H 0.06 2.27 8.14 -2.38 -0.02 2.25 16 29 H 0.26 15.52 8.31 -92.71 -0.77 14.75 16 30 H 0.04 1.91 3.27 -2.39 -0.01 1.90 16 31 H 0.07 2.60 8.14 -2.39 -0.02 2.58 16 32 H 0.10 3.42 8.14 -2.39 -0.02 3.40 16 33 H 0.03 1.38 7.38 -2.39 -0.02 1.36 16 Total: -1.00 -63.01 247.25 4.32 -58.69 By element: Atomic # 1 Polarization: 7.83 SS G_CDS: 0.98 Total: 8.81 kcal Atomic # 6 Polarization: -41.60 SS G_CDS: 2.71 Total: -38.89 kcal Atomic # 7 Polarization: -59.34 SS G_CDS: 0.30 Total: -59.04 kcal Atomic # 8 Polarization: -14.72 SS G_CDS: -1.35 Total: -16.07 kcal Atomic # 14 Polarization: 44.82 SS G_CDS: 1.67 Total: 46.50 kcal Total: -63.01 4.32 -58.69 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259773245.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.512 kcal (2) G-P(sol) polarization free energy of solvation -63.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.688 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds