Wall clock time and date at job start Mon Mar 30 2020 02:06:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.46823 * 2 1 4 4 C 1.52999 * 109.46884 * 120.00034 * 2 1 3 5 5 H 1.09002 * 109.48249 * 299.99972 * 4 2 1 6 6 C 1.53095 * 109.48552 * 179.97438 * 4 2 1 7 7 C 1.53186 * 109.16108 * 182.40370 * 6 4 2 8 8 H 1.09000 * 109.61386 * 176.89469 * 7 6 4 9 9 C 1.50697 * 109.54113 * 297.11235 * 7 6 4 10 10 H 1.08004 * 120.00408 * 359.56002 * 9 7 6 11 11 C 1.37876 * 120.00016 * 179.55708 * 9 7 6 12 12 N 1.31516 * 119.99835 * 359.97438 * 11 9 7 13 13 Si 1.86802 * 120.00293 * 180.02562 * 11 9 7 14 14 H 1.48501 * 109.46879 * 359.97438 * 13 11 9 15 15 H 1.48490 * 109.47203 * 120.00114 * 13 11 9 16 16 H 1.48499 * 109.46818 * 239.99993 * 13 11 9 17 17 C 1.53176 * 109.03702 * 56.98084 * 7 6 4 18 18 C 1.53098 * 109.16241 * 303.01937 * 17 7 6 19 19 O 1.42900 * 109.41322 * 57.61138 * 18 17 7 20 20 H 1.08998 * 109.47338 * 59.99801 * 1 2 3 21 21 H 1.09007 * 109.47194 * 180.02562 * 1 2 3 22 22 H 1.09002 * 109.47312 * 300.00051 * 1 2 3 23 23 H 1.09001 * 109.46596 * 239.99737 * 2 1 3 24 24 H 1.09006 * 109.46599 * 180.02562 * 3 2 1 25 25 H 1.09001 * 109.47071 * 299.99755 * 3 2 1 26 26 H 1.09002 * 109.47224 * 60.00449 * 3 2 1 27 27 H 1.08997 * 109.52552 * 302.30760 * 6 4 2 28 28 H 1.09002 * 109.52029 * 62.49860 * 6 4 2 29 29 H 0.97003 * 120.00031 * 179.97438 * 12 11 9 30 30 H 1.08997 * 109.52465 * 183.11239 * 17 7 6 31 31 H 1.08996 * 109.57271 * 62.95724 * 17 7 6 32 32 H 1.08997 * 109.47875 * 297.62336 * 18 17 7 33 33 H 1.08994 * 109.47542 * 177.59064 * 18 17 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.6767 -0.2076 2.1394 6 6 3.5709 -0.7220 1.2493 7 6 4.0733 -1.4975 2.4711 8 1 5.1618 -1.5499 2.4491 9 6 3.6276 -0.7988 3.7298 10 1 3.0504 0.1118 3.6665 11 6 3.9568 -1.3221 4.9622 12 7 4.6593 -2.4313 5.0392 13 14 3.4039 -0.4564 6.5224 14 1 2.6326 0.7615 6.1659 15 1 2.5463 -1.3707 7.3184 16 1 4.5938 -0.0715 7.3231 17 6 3.4912 -2.9140 2.4378 18 6 1.9633 -2.8285 2.3918 19 8 1.5643 -2.0688 1.2491 20 1 -0.3634 0.5138 -0.8899 21 1 -0.3634 -1.0277 0.0005 22 1 -0.3634 0.5138 0.8900 23 1 1.8933 -0.5139 -0.8900 24 1 3.1300 1.4425 -0.0005 25 1 1.6766 1.9563 -0.8900 26 1 1.6767 1.9563 0.8900 27 1 3.9350 -1.1998 0.3398 28 1 3.9357 0.3042 1.2940 29 1 4.8912 -2.7992 5.9063 30 1 3.7990 -3.4554 3.3323 31 1 3.8536 -3.4370 1.5528 32 1 1.5991 -2.3425 3.2968 33 1 1.5450 -3.8328 2.3248 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259774541.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:32 Heat of formation + Delta-G solvation = -91.671398 kcal Electronic energy + Delta-G solvation = -13599.604104 eV Core-core repulsion = 11430.560876 eV Total energy + Delta-G solvation = -2169.043228 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.42609 -36.33863 -35.58429 -33.09756 -30.70069 -28.08886 -27.30014 -25.01404 -24.18066 -20.98308 -20.84379 -17.95209 -17.15874 -16.91223 -16.48962 -15.29818 -15.10743 -14.76645 -14.53124 -14.07180 -13.76268 -13.55901 -13.09721 -12.84124 -12.81308 -12.48733 -12.27752 -11.94672 -11.90825 -11.79768 -11.56012 -11.21165 -10.90750 -10.80271 -10.49336 -9.88242 -8.09670 -6.22012 1.37732 1.40829 1.50826 2.41682 3.03913 3.17947 3.94778 4.12019 4.33960 4.44177 4.53088 4.56001 4.61541 4.68566 4.80965 4.87588 4.92078 5.04770 5.07400 5.14339 5.25302 5.26321 5.36803 5.50217 5.51076 5.59341 5.62756 5.79598 6.01821 6.35142 6.58572 6.87691 7.45261 8.95535 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.039136 B = 0.012085 C = 0.010990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 715.288540 B = 2316.461202 C = 2547.142636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.088 4.088 3 C -0.142 4.142 4 C 0.106 3.894 5 H 0.040 0.960 6 C -0.129 4.129 7 C 0.034 3.966 8 H -0.007 1.007 9 C -0.516 4.516 10 H 0.052 0.948 11 C 0.014 3.986 12 N -0.917 5.917 13 Si 0.946 3.054 14 H -0.267 1.267 15 H -0.281 1.281 16 H -0.282 1.282 17 C -0.140 4.140 18 C 0.083 3.917 19 O -0.396 6.396 20 H 0.073 0.927 21 H 0.049 0.951 22 H 0.047 0.953 23 H 0.073 0.927 24 H 0.054 0.946 25 H 0.079 0.921 26 H 0.051 0.949 27 H 0.049 0.951 28 H 0.064 0.936 29 H 0.260 0.740 30 H 0.073 0.927 31 H 0.030 0.970 32 H 0.034 0.966 33 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.328 4.206 -7.334 10.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.106 4.106 3 C -0.199 4.199 4 C 0.049 3.951 5 H 0.058 0.942 6 C -0.167 4.167 7 C 0.015 3.985 8 H 0.011 0.989 9 C -0.554 4.554 10 H 0.071 0.929 11 C -0.184 4.184 12 N -0.557 5.557 13 Si 0.772 3.228 14 H -0.191 1.191 15 H -0.207 1.207 16 H -0.208 1.208 17 C -0.178 4.178 18 C 0.007 3.993 19 O -0.315 6.315 20 H 0.092 0.908 21 H 0.069 0.931 22 H 0.067 0.933 23 H 0.091 0.909 24 H 0.073 0.927 25 H 0.098 0.902 26 H 0.070 0.930 27 H 0.067 0.933 28 H 0.082 0.918 29 H 0.069 0.931 30 H 0.091 0.909 31 H 0.049 0.951 32 H 0.053 0.947 33 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -6.369 4.024 -7.353 10.528 hybrid contribution 0.408 0.131 1.444 1.506 sum -5.961 4.155 -5.909 9.366 Atomic orbital electron populations 1.21716 0.94071 1.01726 1.01873 1.21152 0.96976 0.96235 0.96241 1.21825 1.01236 0.94334 1.02489 1.22054 0.92799 0.82557 0.97703 0.94212 1.22131 0.96532 1.00329 0.97695 1.18751 0.94084 0.92631 0.93004 0.98905 1.21415 1.33647 1.08910 0.91408 0.92936 1.25675 0.95261 0.95633 1.01826 1.70003 1.39499 1.21245 1.24940 0.85678 0.78077 0.78928 0.80090 1.19133 1.20664 1.20803 1.22015 0.95898 0.99794 1.00107 1.22311 0.94685 0.94658 0.87666 1.87678 1.75093 1.24299 1.44474 0.90844 0.93144 0.93339 0.90874 0.92653 0.90205 0.93007 0.93275 0.91783 0.93065 0.90884 0.95147 0.94748 0.89320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.65 9.05 71.98 0.65 -3.00 16 2 C -0.09 -2.65 2.72 -10.79 -0.03 -2.68 16 3 C -0.14 -3.68 8.84 71.98 0.64 -3.04 16 4 C 0.11 4.17 1.99 30.63 0.06 4.24 16 5 H 0.04 1.73 6.87 -2.39 -0.02 1.71 16 6 C -0.13 -5.47 4.44 30.69 0.14 -5.34 16 7 C 0.03 1.72 2.62 -11.42 -0.03 1.70 16 8 H -0.01 -0.41 8.14 -2.39 -0.02 -0.43 16 9 C -0.52 -27.95 6.81 25.60 0.17 -27.77 16 10 H 0.05 2.82 6.92 -2.91 -0.02 2.80 16 11 C 0.01 0.79 5.30 84.65 0.45 1.24 16 12 N -0.92 -52.62 11.31 21.45 0.24 -52.38 16 13 Si 0.95 43.33 29.54 68.60 2.03 45.36 16 14 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 15 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 16 H -0.28 -12.75 7.11 99.48 0.71 -12.05 16 17 C -0.14 -6.84 5.45 30.69 0.17 -6.67 16 18 C 0.08 3.66 6.62 72.01 0.48 4.14 16 19 O -0.40 -16.53 9.73 -148.98 -1.45 -17.98 16 20 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 21 H 0.05 1.45 7.68 -2.38 -0.02 1.43 16 22 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 23 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 24 H 0.05 1.49 6.49 -2.38 -0.02 1.47 16 25 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 26 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 27 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 28 H 0.06 2.59 6.57 -2.39 -0.02 2.58 16 29 H 0.26 14.21 8.31 -92.71 -0.77 13.44 16 30 H 0.07 3.96 6.01 -2.39 -0.01 3.95 16 31 H 0.03 1.39 8.14 -2.39 -0.02 1.37 16 32 H 0.03 1.63 7.38 -2.39 -0.02 1.62 16 33 H 0.09 3.43 8.14 -2.39 -0.02 3.41 16 Total: -1.00 -58.69 255.26 4.57 -54.12 By element: Atomic # 1 Polarization: 7.03 SS G_CDS: 1.06 Total: 8.09 kcal Atomic # 6 Polarization: -39.89 SS G_CDS: 2.69 Total: -37.20 kcal Atomic # 7 Polarization: -52.62 SS G_CDS: 0.24 Total: -52.38 kcal Atomic # 8 Polarization: -16.53 SS G_CDS: -1.45 Total: -17.98 kcal Atomic # 14 Polarization: 43.33 SS G_CDS: 2.03 Total: 45.36 kcal Total: -58.69 4.57 -54.12 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259774541.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.552 kcal (2) G-P(sol) polarization free energy of solvation -58.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.120 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds