Wall clock time and date at job start Mon Mar 30 2020 02:06:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 C 1.52998 * 109.46768 * 2 1 4 4 C 1.52996 * 109.46805 * 119.99769 * 2 1 3 5 5 H 1.09004 * 109.48537 * 60.02491 * 4 2 1 6 6 C 1.53091 * 109.47740 * 180.02562 * 4 2 1 7 7 C 1.53184 * 109.16322 * 177.59043 * 6 4 2 8 8 H 1.09000 * 109.61792 * 62.92790 * 7 6 4 9 9 C 1.50695 * 109.54339 * 183.15237 * 7 6 4 10 10 H 1.07999 * 120.00276 * 5.22961 * 9 7 6 11 11 C 1.37880 * 120.00190 * 185.23344 * 9 7 6 12 12 N 1.31509 * 120.00355 * 198.19504 * 11 9 7 13 13 Si 1.86803 * 119.99651 * 18.18791 * 11 9 7 14 14 H 1.48504 * 109.47102 * 180.02562 * 13 11 9 15 15 H 1.48498 * 109.47250 * 299.99951 * 13 11 9 16 16 H 1.48490 * 109.47014 * 60.00541 * 13 11 9 17 17 C 1.53179 * 109.03498 * 303.01830 * 7 6 4 18 18 C 1.53096 * 109.16353 * 56.97980 * 17 7 6 19 19 O 1.42901 * 109.41221 * 302.39183 * 18 17 7 20 20 H 1.08998 * 109.46908 * 300.00093 * 1 2 3 21 21 H 1.08998 * 109.46986 * 60.00464 * 1 2 3 22 22 H 1.09000 * 109.46938 * 180.02562 * 1 2 3 23 23 H 1.08998 * 109.46908 * 239.99907 * 2 1 3 24 24 H 1.09000 * 109.46801 * 180.02562 * 3 2 1 25 25 H 1.08998 * 109.46988 * 299.99535 * 3 2 1 26 26 H 1.09000 * 109.47210 * 59.99796 * 3 2 1 27 27 H 1.08995 * 109.52479 * 57.68740 * 6 4 2 28 28 H 1.08992 * 109.52524 * 297.49280 * 6 4 2 29 29 H 0.97005 * 119.99930 * 354.61291 * 12 11 9 30 30 H 1.09005 * 109.51931 * 176.88156 * 17 7 6 31 31 H 1.08997 * 109.52365 * 297.07403 * 17 7 6 32 32 H 1.09007 * 109.47617 * 62.37309 * 18 17 7 33 33 H 1.08993 * 109.47911 * 182.40534 * 18 17 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 1 1.6771 -1.7491 1.2493 6 6 3.5709 -0.7208 1.2498 7 6 4.0735 -1.3909 2.5323 8 1 3.7525 -2.4324 2.5510 9 6 5.5783 -1.3262 2.5785 10 1 6.1191 -0.7818 1.8185 11 6 6.2650 -1.9622 3.5910 12 7 7.5102 -1.6289 3.8514 13 14 5.4264 -3.2972 4.5930 14 1 6.3719 -3.8186 5.6125 15 1 4.2319 -2.7314 5.2699 16 1 5.0086 -4.4024 3.6936 17 6 3.4915 -0.6536 3.7423 18 6 1.9636 -0.6566 3.6455 19 8 1.5645 -0.0472 2.4162 20 1 -0.3633 0.5138 0.8900 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 1.8934 -0.5138 -0.8900 24 1 3.1300 1.4425 -0.0005 25 1 1.6767 1.9563 -0.8900 26 1 1.6766 1.9563 0.8900 27 1 3.9349 0.3058 1.2086 28 1 3.9357 -1.2726 0.3836 29 1 7.9711 -0.9925 3.2826 30 1 3.7994 -1.1576 4.6585 31 1 3.8539 0.3743 3.7514 32 1 1.5995 -1.6836 3.6773 33 1 1.5454 -0.0964 4.4817 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259774542.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:34 Heat of formation + Delta-G solvation = -76.370156 kcal Electronic energy + Delta-G solvation = -13455.852411 eV Core-core repulsion = 11287.472695 eV Total energy + Delta-G solvation = -2168.379716 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.04457 -34.95210 -33.92433 -31.52079 -29.41112 -26.94380 -25.90525 -23.09235 -22.14763 -19.59362 -18.97675 -17.48876 -15.71958 -15.22514 -14.43859 -14.09791 -13.73631 -13.53903 -13.29086 -12.72037 -12.24285 -11.93351 -11.72189 -11.50380 -11.14068 -11.06975 -10.67098 -10.48570 -10.22645 -10.06889 -9.87304 -9.72167 -9.30634 -8.92158 -8.61654 -8.13847 -6.42772 -4.03783 3.35981 3.41811 3.60097 4.33490 4.49257 5.11642 5.20745 5.26384 5.33065 5.76960 5.78217 5.85364 5.90487 5.93317 6.04969 6.09717 6.15117 6.16915 6.24545 6.39204 6.43628 6.52059 6.65302 6.81472 6.86385 7.03229 7.28899 7.55897 7.86359 8.18458 8.39332 8.92723 9.64319 10.95848 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.052944 B = 0.010698 C = 0.009833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 528.732136 B = 2616.607962 C = 2846.869293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.087 4.087 3 C -0.143 4.143 4 C 0.092 3.908 5 H 0.047 0.953 6 C -0.128 4.128 7 C 0.020 3.980 8 H 0.017 0.983 9 C -0.596 4.596 10 H 0.054 0.946 11 C 0.028 3.972 12 N -0.909 5.909 13 Si 1.047 2.953 14 H -0.287 1.287 15 H -0.274 1.274 16 H -0.285 1.285 17 C -0.157 4.157 18 C 0.059 3.941 19 O -0.383 6.383 20 H 0.061 0.939 21 H 0.047 0.953 22 H 0.048 0.952 23 H 0.075 0.925 24 H 0.058 0.942 25 H 0.044 0.956 26 H 0.061 0.939 27 H 0.064 0.936 28 H 0.056 0.944 29 H 0.267 0.733 30 H 0.067 0.933 31 H 0.061 0.939 32 H 0.037 0.963 33 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.389 1.713 -4.360 13.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.106 4.106 3 C -0.200 4.200 4 C 0.034 3.966 5 H 0.065 0.935 6 C -0.166 4.166 7 C 0.001 3.999 8 H 0.035 0.965 9 C -0.634 4.634 10 H 0.072 0.928 11 C -0.177 4.177 12 N -0.543 5.543 13 Si 0.876 3.124 14 H -0.213 1.213 15 H -0.201 1.201 16 H -0.211 1.211 17 C -0.195 4.195 18 C -0.017 4.017 19 O -0.302 6.302 20 H 0.080 0.920 21 H 0.066 0.934 22 H 0.067 0.933 23 H 0.093 0.907 24 H 0.077 0.923 25 H 0.063 0.937 26 H 0.080 0.920 27 H 0.083 0.917 28 H 0.075 0.925 29 H 0.077 0.923 30 H 0.085 0.915 31 H 0.080 0.920 32 H 0.056 0.944 33 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -12.271 0.866 -3.078 12.681 hybrid contribution 0.093 0.757 -1.280 1.490 sum -12.178 1.623 -4.358 13.036 Atomic orbital electron populations 1.21767 0.95350 1.01231 1.01558 1.21145 0.95783 0.97131 0.96522 1.21796 1.01428 0.95594 1.01223 1.22181 0.94846 0.94350 0.85174 0.93508 1.22164 0.92940 1.01657 0.99850 1.19007 0.96951 0.93707 0.90259 0.96505 1.21968 0.90252 1.36579 1.14582 0.92802 1.25783 0.96472 0.98759 0.96637 1.70855 1.13324 1.33884 1.36237 0.84007 0.75536 0.76385 0.76425 1.21250 1.20096 1.21102 1.22693 0.92940 1.02283 1.01562 1.22638 0.96561 0.96607 0.85907 1.87766 1.74729 1.54131 1.13587 0.91954 0.93363 0.93280 0.90683 0.92254 0.93661 0.91978 0.91731 0.92492 0.92337 0.91492 0.92045 0.94443 0.90316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.82 9.05 37.16 0.34 -1.49 16 2 C -0.09 -1.29 2.81 -90.62 -0.25 -1.54 16 3 C -0.14 -2.08 8.70 37.16 0.32 -1.76 16 4 C 0.09 1.64 2.38 -26.69 -0.06 1.57 16 5 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 6 C -0.13 -2.67 4.36 -26.59 -0.12 -2.79 16 7 C 0.02 0.47 1.77 -91.59 -0.16 0.31 16 8 H 0.02 0.41 6.80 -51.93 -0.35 0.06 16 9 C -0.60 -16.93 8.82 -34.44 -0.30 -17.23 16 10 H 0.05 1.65 7.99 -52.49 -0.42 1.23 16 11 C 0.03 0.82 5.34 -17.82 -0.10 0.72 16 12 N -0.91 -28.18 13.69 55.43 0.76 -27.42 16 13 Si 1.05 25.37 26.43 -169.99 -4.49 20.88 16 14 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 15 H -0.27 -6.08 5.56 56.52 0.31 -5.77 16 16 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 17 C -0.16 -3.47 5.10 -26.59 -0.14 -3.61 16 18 C 0.06 1.10 6.84 37.21 0.25 1.36 16 19 O -0.38 -7.12 9.06 -35.23 -0.32 -7.44 16 20 H 0.06 0.85 7.68 -51.93 -0.40 0.45 16 21 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 22 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 23 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 24 H 0.06 0.92 6.38 -51.93 -0.33 0.59 16 25 H 0.04 0.56 8.14 -51.93 -0.42 0.13 16 26 H 0.06 0.96 7.68 -51.93 -0.40 0.56 16 27 H 0.06 1.39 6.31 -51.93 -0.33 1.06 16 28 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 29 H 0.27 8.25 8.73 -40.82 -0.36 7.89 16 30 H 0.07 1.53 4.87 -51.93 -0.25 1.27 16 31 H 0.06 1.42 8.14 -51.93 -0.42 1.00 16 32 H 0.04 0.66 8.14 -51.92 -0.42 0.24 16 33 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 LS Contribution 253.85 15.07 3.83 3.83 Total: -1.00 -29.82 253.85 -5.97 -35.79 By element: Atomic # 1 Polarization: 4.35 SS G_CDS: -5.53 Total: -1.18 kcal Atomic # 6 Polarization: -24.24 SS G_CDS: -0.22 Total: -24.45 kcal Atomic # 7 Polarization: -28.18 SS G_CDS: 0.76 Total: -27.42 kcal Atomic # 8 Polarization: -7.12 SS G_CDS: -0.32 Total: -7.44 kcal Atomic # 14 Polarization: 25.37 SS G_CDS: -4.49 Total: 20.88 kcal Total LS contribution 3.83 Total: 3.83 kcal Total: -29.82 -5.97 -35.79 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259774542.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.581 kcal (2) G-P(sol) polarization free energy of solvation -29.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.971 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.789 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds