Wall clock time and date at job start Mon Mar 30 2020 02:06:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 C 1.52998 * 109.46768 * 2 1 4 4 C 1.52996 * 109.46805 * 119.99769 * 2 1 3 5 5 H 1.09004 * 109.48537 * 60.02491 * 4 2 1 6 6 C 1.53091 * 109.47740 * 180.02562 * 4 2 1 7 7 C 1.53184 * 109.16322 * 177.59043 * 6 4 2 8 8 H 1.09000 * 109.61792 * 62.92790 * 7 6 4 9 9 C 1.50695 * 109.54339 * 183.15237 * 7 6 4 10 10 H 1.07999 * 120.00276 * 5.22961 * 9 7 6 11 11 C 1.37880 * 120.00190 * 185.23344 * 9 7 6 12 12 N 1.31509 * 120.00355 * 198.19504 * 11 9 7 13 13 Si 1.86803 * 119.99651 * 18.18791 * 11 9 7 14 14 H 1.48504 * 109.47102 * 180.02562 * 13 11 9 15 15 H 1.48498 * 109.47250 * 299.99951 * 13 11 9 16 16 H 1.48490 * 109.47014 * 60.00541 * 13 11 9 17 17 C 1.53179 * 109.03498 * 303.01830 * 7 6 4 18 18 C 1.53096 * 109.16353 * 56.97980 * 17 7 6 19 19 O 1.42901 * 109.41221 * 302.39183 * 18 17 7 20 20 H 1.08998 * 109.46908 * 300.00093 * 1 2 3 21 21 H 1.08998 * 109.46986 * 60.00464 * 1 2 3 22 22 H 1.09000 * 109.46938 * 180.02562 * 1 2 3 23 23 H 1.08998 * 109.46908 * 239.99907 * 2 1 3 24 24 H 1.09000 * 109.46801 * 180.02562 * 3 2 1 25 25 H 1.08998 * 109.46988 * 299.99535 * 3 2 1 26 26 H 1.09000 * 109.47210 * 59.99796 * 3 2 1 27 27 H 1.08995 * 109.52479 * 57.68740 * 6 4 2 28 28 H 1.08992 * 109.52524 * 297.49280 * 6 4 2 29 29 H 0.97005 * 119.99930 * 354.61291 * 12 11 9 30 30 H 1.09005 * 109.51931 * 176.88156 * 17 7 6 31 31 H 1.08997 * 109.52365 * 297.07403 * 17 7 6 32 32 H 1.09007 * 109.47617 * 62.37309 * 18 17 7 33 33 H 1.08993 * 109.47911 * 182.40534 * 18 17 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 1 1.6771 -1.7491 1.2493 6 6 3.5709 -0.7208 1.2498 7 6 4.0735 -1.3909 2.5323 8 1 3.7525 -2.4324 2.5510 9 6 5.5783 -1.3262 2.5785 10 1 6.1191 -0.7818 1.8185 11 6 6.2650 -1.9622 3.5910 12 7 7.5102 -1.6289 3.8514 13 14 5.4264 -3.2972 4.5930 14 1 6.3719 -3.8186 5.6125 15 1 4.2319 -2.7314 5.2699 16 1 5.0086 -4.4024 3.6936 17 6 3.4915 -0.6536 3.7423 18 6 1.9636 -0.6566 3.6455 19 8 1.5645 -0.0472 2.4162 20 1 -0.3633 0.5138 0.8900 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 1.8934 -0.5138 -0.8900 24 1 3.1300 1.4425 -0.0005 25 1 1.6767 1.9563 -0.8900 26 1 1.6766 1.9563 0.8900 27 1 3.9349 0.3058 1.2086 28 1 3.9357 -1.2726 0.3836 29 1 7.9711 -0.9925 3.2826 30 1 3.7994 -1.1576 4.6585 31 1 3.8539 0.3743 3.7514 32 1 1.5995 -1.6836 3.6773 33 1 1.5454 -0.0964 4.4817 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259774542.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:34 Heat of formation + Delta-G solvation = -95.178552 kcal Electronic energy + Delta-G solvation = -13456.668004 eV Core-core repulsion = 11287.472695 eV Total energy + Delta-G solvation = -2169.195309 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.55188 -36.38387 -35.68759 -33.58571 -30.89268 -28.13193 -27.71043 -24.63801 -23.90228 -21.10228 -20.60249 -19.63371 -17.14856 -16.75948 -15.93831 -15.82064 -15.32816 -15.12038 -14.76855 -14.14442 -13.99863 -13.46531 -13.33129 -12.85354 -12.66470 -12.46451 -12.40209 -11.91401 -11.76851 -11.67094 -11.47897 -11.41778 -10.94094 -10.85526 -10.50768 -10.15339 -8.75004 -6.38172 1.42237 1.50942 1.70613 2.47308 2.93885 3.04683 3.84110 3.97044 4.18097 4.21754 4.33490 4.38049 4.45359 4.55399 4.69992 4.77411 4.84540 4.86856 4.94853 5.04439 5.09523 5.14420 5.19067 5.31014 5.40419 5.53678 5.56492 5.70061 5.99192 6.10405 6.40279 6.55178 7.39734 8.61183 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.052944 B = 0.010698 C = 0.009833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 528.732136 B = 2616.607962 C = 2846.869293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.087 4.087 3 C -0.141 4.141 4 C 0.095 3.905 5 H 0.059 0.941 6 C -0.125 4.125 7 C 0.013 3.987 8 H 0.025 0.975 9 C -0.602 4.602 10 H 0.011 0.989 11 C -0.025 4.025 12 N -0.941 5.941 13 Si 1.085 2.915 14 H -0.290 1.290 15 H -0.237 1.237 16 H -0.264 1.264 17 C -0.154 4.154 18 C 0.063 3.937 19 O -0.384 6.384 20 H 0.053 0.947 21 H 0.068 0.932 22 H 0.057 0.943 23 H 0.087 0.913 24 H 0.038 0.962 25 H 0.069 0.931 26 H 0.050 0.950 27 H 0.046 0.954 28 H 0.054 0.946 29 H 0.249 0.751 30 H 0.062 0.938 31 H 0.039 0.961 32 H 0.056 0.944 33 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.470 0.873 -4.349 16.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.106 4.106 3 C -0.198 4.198 4 C 0.038 3.962 5 H 0.076 0.924 6 C -0.163 4.163 7 C -0.006 4.006 8 H 0.043 0.957 9 C -0.640 4.640 10 H 0.029 0.971 11 C -0.222 4.222 12 N -0.577 5.577 13 Si 0.906 3.094 14 H -0.217 1.217 15 H -0.162 1.162 16 H -0.189 1.189 17 C -0.192 4.192 18 C -0.013 4.013 19 O -0.304 6.304 20 H 0.072 0.928 21 H 0.087 0.913 22 H 0.076 0.924 23 H 0.105 0.895 24 H 0.058 0.942 25 H 0.088 0.912 26 H 0.069 0.931 27 H 0.065 0.935 28 H 0.073 0.927 29 H 0.058 0.942 30 H 0.080 0.920 31 H 0.057 0.943 32 H 0.075 0.925 33 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -15.372 0.051 -3.093 15.680 hybrid contribution 1.141 1.088 -1.372 2.090 sum -14.231 1.139 -4.465 14.958 Atomic orbital electron populations 1.21709 0.93328 1.02058 1.02164 1.21198 0.97411 0.96655 0.95305 1.21768 1.00132 0.96011 1.01925 1.22236 0.92092 0.95600 0.86320 0.92354 1.22090 0.95850 1.00117 0.98209 1.19037 0.93814 0.94817 0.92890 0.95667 1.22243 0.93159 1.35348 1.13260 0.97094 1.27338 0.96248 1.00400 0.98199 1.70997 1.14762 1.34899 1.37051 0.83579 0.75946 0.74199 0.75675 1.21669 1.16162 1.18903 1.22567 0.96121 1.00413 1.00111 1.22674 0.93371 0.98422 0.86840 1.87791 1.74265 1.54528 1.13802 0.92820 0.91322 0.92352 0.89465 0.94247 0.91176 0.93061 0.93506 0.92735 0.94181 0.91975 0.94259 0.92533 0.87575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.97 9.05 71.99 0.65 -2.32 16 2 C -0.09 -2.33 2.81 -10.79 -0.03 -2.36 16 3 C -0.14 -3.87 8.70 71.98 0.63 -3.24 16 4 C 0.10 3.14 2.38 30.62 0.07 3.22 16 5 H 0.06 1.83 8.14 -2.38 -0.02 1.81 16 6 C -0.12 -5.14 4.36 30.69 0.13 -5.01 16 7 C 0.01 0.63 1.77 -11.42 -0.02 0.61 16 8 H 0.03 1.16 6.80 -2.39 -0.02 1.14 16 9 C -0.60 -35.20 8.82 25.60 0.23 -34.98 16 10 H 0.01 0.70 7.99 -2.91 -0.02 0.67 16 11 C -0.02 -1.46 5.34 84.66 0.45 -1.01 16 12 N -0.94 -60.36 13.69 21.45 0.29 -60.07 16 13 Si 1.09 49.95 26.43 68.60 1.81 51.76 16 14 H -0.29 -13.54 7.11 99.48 0.71 -12.83 16 15 H -0.24 -9.48 5.56 99.48 0.55 -8.93 16 16 H -0.26 -11.23 7.11 99.48 0.71 -10.53 16 17 C -0.15 -6.60 5.10 30.69 0.16 -6.44 16 18 C 0.06 2.13 6.84 72.01 0.49 2.62 16 19 O -0.38 -13.20 9.06 -148.98 -1.35 -14.55 16 20 H 0.05 1.28 7.68 -2.39 -0.02 1.26 16 21 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 22 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 23 H 0.09 2.14 8.14 -2.39 -0.02 2.12 16 24 H 0.04 1.21 6.38 -2.39 -0.02 1.20 16 25 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 26 H 0.05 1.50 7.68 -2.39 -0.02 1.48 16 27 H 0.05 2.06 6.31 -2.39 -0.02 2.05 16 28 H 0.05 2.22 8.14 -2.39 -0.02 2.20 16 29 H 0.25 16.30 8.73 -92.70 -0.81 15.49 16 30 H 0.06 2.69 4.87 -2.38 -0.01 2.68 16 31 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16 32 H 0.06 1.72 8.14 -2.38 -0.02 1.70 16 33 H 0.11 3.01 8.14 -2.39 -0.02 2.99 16 Total: -1.00 -65.93 253.85 4.38 -61.55 By element: Atomic # 1 Polarization: 9.34 SS G_CDS: 0.86 Total: 10.21 kcal Atomic # 6 Polarization: -51.67 SS G_CDS: 2.76 Total: -48.90 kcal Atomic # 7 Polarization: -60.36 SS G_CDS: 0.29 Total: -60.07 kcal Atomic # 8 Polarization: -13.20 SS G_CDS: -1.35 Total: -14.55 kcal Atomic # 14 Polarization: 49.95 SS G_CDS: 1.81 Total: 51.76 kcal Total: -65.93 4.38 -61.55 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259774542.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.627 kcal (2) G-P(sol) polarization free energy of solvation -65.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.552 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds