Wall clock time and date at job start Mon Mar 30 2020 02:06:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53005 * 109.47454 * 2 1 4 4 C 1.52999 * 109.47320 * 120.00004 * 2 1 3 5 5 H 1.08995 * 109.48360 * 299.97828 * 4 2 1 6 6 C 1.53107 * 109.48608 * 180.02562 * 4 2 1 7 7 C 1.53176 * 109.15896 * 182.50037 * 6 4 2 8 8 H 1.09009 * 109.53852 * 296.93459 * 7 6 4 9 9 C 1.50701 * 109.54367 * 176.76137 * 7 6 4 10 10 H 1.08002 * 119.99761 * 0.16785 * 9 7 6 11 11 C 1.37871 * 119.99694 * 180.45348 * 9 7 6 12 12 N 1.31514 * 120.00482 * 359.71466 * 11 9 7 13 13 Si 1.86801 * 119.99746 * 179.72062 * 11 9 7 14 14 H 1.48504 * 109.47209 * 89.99886 * 13 11 9 15 15 H 1.48501 * 109.47358 * 209.99377 * 13 11 9 16 16 H 1.48496 * 109.47341 * 329.99989 * 13 11 9 17 17 C 1.53173 * 109.11033 * 56.84276 * 7 6 4 18 18 C 1.53086 * 109.16569 * 303.06640 * 17 7 6 19 19 O 1.42902 * 109.41482 * 57.60955 * 18 17 7 20 20 H 1.09002 * 109.47009 * 299.99869 * 1 2 3 21 21 H 1.09007 * 109.47186 * 60.00058 * 1 2 3 22 22 H 1.09004 * 109.47507 * 179.97438 * 1 2 3 23 23 H 1.09003 * 109.47467 * 239.99862 * 2 1 3 24 24 H 1.09001 * 109.46673 * 300.00504 * 3 2 1 25 25 H 1.09003 * 109.46896 * 59.99513 * 3 2 1 26 26 H 1.09002 * 109.47577 * 180.02562 * 3 2 1 27 27 H 1.09002 * 109.59751 * 62.54473 * 6 4 2 28 28 H 1.09010 * 109.44776 * 302.35919 * 6 4 2 29 29 H 0.96995 * 120.00207 * 179.97438 * 12 11 9 30 30 H 1.09001 * 109.52325 * 62.97617 * 17 7 6 31 31 H 1.09005 * 109.51923 * 183.09514 * 17 7 6 32 32 H 1.09000 * 109.48192 * 177.59004 * 18 17 7 33 33 H 1.08995 * 109.48154 * 297.61222 * 18 17 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 1 1.6771 -0.2074 2.1393 6 6 3.5710 -0.7208 1.2498 7 6 4.0735 -1.4983 2.4702 8 1 3.7530 -0.9932 3.3815 9 6 5.5783 -1.5715 2.4369 10 1 6.1237 -1.1077 1.6282 11 6 6.2585 -2.2355 3.4355 12 7 5.5944 -2.8003 4.4202 13 14 8.1234 -2.3328 3.3901 14 1 8.6976 -1.1701 4.1138 15 1 8.5695 -3.5906 4.0414 16 1 8.5857 -2.3150 1.9790 17 6 3.4907 -2.9145 2.4374 18 6 1.9629 -2.8283 2.3921 19 8 1.5637 -2.0685 1.2495 20 1 -0.3633 0.5138 0.8900 21 1 -0.3634 0.5139 -0.8900 22 1 -0.3634 -1.0277 -0.0005 23 1 1.8933 -0.5139 -0.8900 24 1 1.6766 1.9563 -0.8900 25 1 1.6766 1.9564 0.8900 26 1 3.1300 1.4425 -0.0005 27 1 3.9364 0.3051 1.2957 28 1 3.9345 -1.1975 0.3393 29 1 6.0729 -3.2678 5.1226 30 1 3.8525 -3.4368 1.5517 31 1 3.7996 -3.4563 3.3314 32 1 1.5440 -3.8324 2.3254 33 1 1.5992 -2.3422 3.2973 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259774545.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:35 Heat of formation + Delta-G solvation = -78.376360 kcal Electronic energy + Delta-G solvation = -13333.043753 eV Core-core repulsion = 11164.577041 eV Total energy + Delta-G solvation = -2168.466712 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -38.76817 -34.92660 -33.86627 -31.13563 -29.15100 -26.94599 -25.76626 -22.96209 -22.25964 -19.69480 -19.01627 -16.35307 -15.68096 -15.02952 -14.50994 -13.89322 -13.63731 -13.19552 -12.94844 -12.65510 -12.14852 -12.08643 -11.88865 -10.96125 -10.90503 -10.80545 -10.76457 -10.53359 -10.30424 -10.11489 -10.01214 -9.49228 -9.19583 -8.93527 -8.43276 -8.20250 -5.98697 -4.04916 3.30031 3.36791 3.40367 4.43427 4.46646 5.20881 5.29165 5.30724 5.54870 5.83900 5.90168 5.95022 6.02221 6.09456 6.14103 6.26435 6.30951 6.35175 6.45192 6.51732 6.62173 6.64999 6.83716 7.07934 7.16593 7.43399 7.69295 7.95132 7.99975 8.19693 8.44998 8.98444 9.59694 11.07095 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.052697 B = 0.009719 C = 0.008549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 531.216300 B = 2880.268224 C = 3274.452485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.089 4.089 3 C -0.146 4.146 4 C 0.096 3.904 5 H 0.045 0.955 6 C -0.136 4.136 7 C 0.047 3.953 8 H 0.023 0.977 9 C -0.510 4.510 10 H 0.055 0.945 11 C 0.060 3.940 12 N -0.892 5.892 13 Si 0.891 3.109 14 H -0.281 1.281 15 H -0.287 1.287 16 H -0.275 1.275 17 C -0.143 4.143 18 C 0.060 3.940 19 O -0.392 6.392 20 H 0.048 0.952 21 H 0.046 0.954 22 H 0.060 0.940 23 H 0.072 0.928 24 H 0.052 0.948 25 H 0.053 0.947 26 H 0.063 0.937 27 H 0.057 0.943 28 H 0.055 0.945 29 H 0.260 0.740 30 H 0.043 0.957 31 H 0.096 0.904 32 H 0.073 0.927 33 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.074 3.946 -5.441 9.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.107 4.107 3 C -0.203 4.203 4 C 0.039 3.961 5 H 0.063 0.937 6 C -0.174 4.174 7 C 0.028 3.972 8 H 0.041 0.959 9 C -0.549 4.549 10 H 0.073 0.927 11 C -0.141 4.141 12 N -0.531 5.531 13 Si 0.719 3.281 14 H -0.207 1.207 15 H -0.212 1.212 16 H -0.200 1.200 17 C -0.181 4.181 18 C -0.016 4.016 19 O -0.312 6.312 20 H 0.068 0.932 21 H 0.065 0.935 22 H 0.080 0.920 23 H 0.091 0.909 24 H 0.071 0.929 25 H 0.072 0.928 26 H 0.082 0.918 27 H 0.075 0.925 28 H 0.073 0.927 29 H 0.070 0.930 30 H 0.062 0.938 31 H 0.115 0.885 32 H 0.092 0.908 33 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -7.152 3.766 -5.423 9.734 hybrid contribution 1.262 -0.075 0.344 1.310 sum -5.890 3.691 -5.079 8.609 Atomic orbital electron populations 1.21757 0.95436 1.02013 1.00607 1.21099 0.95705 0.95620 0.98323 1.21850 1.01842 0.95371 1.01242 1.22111 0.94847 0.82944 0.96232 0.93672 1.22308 0.93175 1.00664 1.01271 1.18692 0.95127 0.91280 0.92084 0.95856 1.21193 0.91314 1.34040 1.08319 0.92717 1.24978 0.98233 0.95431 0.95420 1.69870 1.35095 1.36185 1.11980 0.86614 0.85955 0.77413 0.78141 1.20731 1.21240 1.19958 1.22223 0.91288 1.01584 1.02994 1.22692 0.97591 0.94112 0.87186 1.87730 1.74968 1.23546 1.44931 0.93248 0.93491 0.92046 0.90927 0.92897 0.92811 0.91828 0.92461 0.92658 0.93045 0.93847 0.88533 0.90849 0.94561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.93 9.05 37.15 0.34 -1.59 16 2 C -0.09 -1.38 2.72 -90.62 -0.25 -1.63 16 3 C -0.15 -1.98 8.84 37.16 0.33 -1.65 16 4 C 0.10 1.83 2.22 -26.68 -0.06 1.77 16 5 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 6 C -0.14 -2.93 4.22 -26.58 -0.11 -3.04 16 7 C 0.05 1.18 2.18 -91.59 -0.20 0.98 16 8 H 0.02 0.64 8.14 -51.92 -0.42 0.22 16 9 C -0.51 -14.19 8.57 -34.44 -0.30 -14.49 16 10 H 0.05 1.51 7.75 -52.49 -0.41 1.10 16 11 C 0.06 1.68 5.30 -17.82 -0.09 1.59 16 12 N -0.89 -25.56 11.36 55.43 0.63 -24.93 16 13 Si 0.89 21.43 29.54 -169.99 -5.02 16.40 16 14 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 15 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 16 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 17 C -0.14 -3.46 5.15 -26.60 -0.14 -3.59 16 18 C 0.06 1.25 6.84 37.20 0.25 1.50 16 19 O -0.39 -7.99 9.73 -35.23 -0.34 -8.33 16 20 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 21 H 0.05 0.55 8.14 -51.92 -0.42 0.13 16 22 H 0.06 0.89 7.68 -51.93 -0.40 0.49 16 23 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 24 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 25 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 26 H 0.06 0.90 6.49 -51.93 -0.34 0.57 16 27 H 0.06 1.17 6.58 -51.93 -0.34 0.83 16 28 H 0.05 1.22 8.14 -51.92 -0.42 0.79 16 29 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 30 H 0.04 1.07 8.14 -51.93 -0.42 0.65 16 31 H 0.10 2.55 6.18 -51.93 -0.32 2.23 16 32 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 33 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 LS Contribution 259.60 15.07 3.91 3.91 Total: -1.00 -28.46 259.60 -6.64 -35.10 By element: Atomic # 1 Polarization: 3.59 SS G_CDS: -5.59 Total: -2.00 kcal Atomic # 6 Polarization: -19.93 SS G_CDS: -0.23 Total: -20.16 kcal Atomic # 7 Polarization: -25.56 SS G_CDS: 0.63 Total: -24.93 kcal Atomic # 8 Polarization: -7.99 SS G_CDS: -0.34 Total: -8.33 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 3.91 Total: 3.91 kcal Total: -28.46 -6.64 -35.10 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259774545.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.278 kcal (2) G-P(sol) polarization free energy of solvation -28.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.098 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds