Wall clock time and date at job start Mon Mar 30 2020 02:06:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53005 * 109.47454 * 2 1 4 4 C 1.52999 * 109.47320 * 120.00004 * 2 1 3 5 5 H 1.08995 * 109.48360 * 299.97828 * 4 2 1 6 6 C 1.53107 * 109.48608 * 180.02562 * 4 2 1 7 7 C 1.53176 * 109.15896 * 182.50037 * 6 4 2 8 8 H 1.09009 * 109.53852 * 296.93459 * 7 6 4 9 9 C 1.50701 * 109.54367 * 176.76137 * 7 6 4 10 10 H 1.08002 * 119.99761 * 0.16785 * 9 7 6 11 11 C 1.37871 * 119.99694 * 180.45348 * 9 7 6 12 12 N 1.31514 * 120.00482 * 359.71466 * 11 9 7 13 13 Si 1.86801 * 119.99746 * 179.72062 * 11 9 7 14 14 H 1.48504 * 109.47209 * 89.99886 * 13 11 9 15 15 H 1.48501 * 109.47358 * 209.99377 * 13 11 9 16 16 H 1.48496 * 109.47341 * 329.99989 * 13 11 9 17 17 C 1.53173 * 109.11033 * 56.84276 * 7 6 4 18 18 C 1.53086 * 109.16569 * 303.06640 * 17 7 6 19 19 O 1.42902 * 109.41482 * 57.60955 * 18 17 7 20 20 H 1.09002 * 109.47009 * 299.99869 * 1 2 3 21 21 H 1.09007 * 109.47186 * 60.00058 * 1 2 3 22 22 H 1.09004 * 109.47507 * 179.97438 * 1 2 3 23 23 H 1.09003 * 109.47467 * 239.99862 * 2 1 3 24 24 H 1.09001 * 109.46673 * 300.00504 * 3 2 1 25 25 H 1.09003 * 109.46896 * 59.99513 * 3 2 1 26 26 H 1.09002 * 109.47577 * 180.02562 * 3 2 1 27 27 H 1.09002 * 109.59751 * 62.54473 * 6 4 2 28 28 H 1.09010 * 109.44776 * 302.35919 * 6 4 2 29 29 H 0.96995 * 120.00207 * 179.97438 * 12 11 9 30 30 H 1.09001 * 109.52325 * 62.97617 * 17 7 6 31 31 H 1.09005 * 109.51923 * 183.09514 * 17 7 6 32 32 H 1.09000 * 109.48192 * 177.59004 * 18 17 7 33 33 H 1.08995 * 109.48154 * 297.61222 * 18 17 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 1 1.6771 -0.2074 2.1393 6 6 3.5710 -0.7208 1.2498 7 6 4.0735 -1.4983 2.4702 8 1 3.7530 -0.9932 3.3815 9 6 5.5783 -1.5715 2.4369 10 1 6.1237 -1.1077 1.6282 11 6 6.2585 -2.2355 3.4355 12 7 5.5944 -2.8003 4.4202 13 14 8.1234 -2.3328 3.3901 14 1 8.6976 -1.1701 4.1138 15 1 8.5695 -3.5906 4.0414 16 1 8.5857 -2.3150 1.9790 17 6 3.4907 -2.9145 2.4374 18 6 1.9629 -2.8283 2.3921 19 8 1.5637 -2.0685 1.2495 20 1 -0.3633 0.5138 0.8900 21 1 -0.3634 0.5139 -0.8900 22 1 -0.3634 -1.0277 -0.0005 23 1 1.8933 -0.5139 -0.8900 24 1 1.6766 1.9563 -0.8900 25 1 1.6766 1.9564 0.8900 26 1 3.1300 1.4425 -0.0005 27 1 3.9364 0.3051 1.2957 28 1 3.9345 -1.1975 0.3393 29 1 6.0729 -3.2678 5.1226 30 1 3.8525 -3.4368 1.5517 31 1 3.7996 -3.4563 3.3314 32 1 1.5440 -3.8324 2.3254 33 1 1.5992 -2.3422 3.2973 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259774545.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:35 Heat of formation + Delta-G solvation = -94.537765 kcal Electronic energy + Delta-G solvation = -13333.744564 eV Core-core repulsion = 11164.577041 eV Total energy + Delta-G solvation = -2169.167523 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.40828 -36.35897 -35.74419 -33.14513 -30.78380 -28.24114 -27.54418 -24.62269 -24.07747 -21.03777 -20.88957 -18.41367 -17.23641 -16.82279 -16.36759 -15.44300 -15.18674 -14.82191 -14.46927 -14.34201 -13.86237 -13.48703 -12.95364 -12.87011 -12.64500 -12.58925 -12.24310 -12.05810 -11.91327 -11.82292 -11.61814 -11.37283 -10.93843 -10.81345 -10.49115 -10.07045 -8.11320 -6.25980 1.39076 1.39916 1.50252 2.40926 2.94430 3.14605 3.88886 4.06889 4.28549 4.31716 4.43409 4.50340 4.58532 4.60824 4.75333 4.86907 4.87100 4.95474 5.04373 5.11550 5.16187 5.23620 5.31508 5.46314 5.47482 5.56194 5.60174 5.93414 5.99900 6.33901 6.47016 6.84329 7.42084 8.92815 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.052697 B = 0.009719 C = 0.008549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 531.216300 B = 2880.268224 C = 3274.452485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.086 4.086 3 C -0.143 4.143 4 C 0.095 3.905 5 H 0.044 0.956 6 C -0.127 4.127 7 C 0.040 3.960 8 H -0.006 1.006 9 C -0.535 4.535 10 H 0.051 0.949 11 C 0.012 3.988 12 N -0.917 5.917 13 Si 0.955 3.045 14 H -0.274 1.274 15 H -0.282 1.282 16 H -0.270 1.270 17 C -0.136 4.136 18 C 0.068 3.932 19 O -0.393 6.393 20 H 0.053 0.947 21 H 0.071 0.929 22 H 0.050 0.950 23 H 0.069 0.931 24 H 0.078 0.922 25 H 0.058 0.942 26 H 0.051 0.949 27 H 0.064 0.936 28 H 0.046 0.954 29 H 0.261 0.739 30 H 0.030 0.970 31 H 0.070 0.930 32 H 0.099 0.901 33 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.528 4.630 -6.393 10.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.105 4.105 3 C -0.200 4.200 4 C 0.038 3.962 5 H 0.062 0.938 6 C -0.165 4.165 7 C 0.021 3.979 8 H 0.012 0.988 9 C -0.573 4.573 10 H 0.069 0.931 11 C -0.187 4.187 12 N -0.557 5.557 13 Si 0.780 3.220 14 H -0.200 1.200 15 H -0.207 1.207 16 H -0.194 1.194 17 C -0.174 4.174 18 C -0.009 4.009 19 O -0.312 6.312 20 H 0.072 0.928 21 H 0.090 0.910 22 H 0.069 0.931 23 H 0.087 0.913 24 H 0.097 0.903 25 H 0.077 0.923 26 H 0.071 0.929 27 H 0.082 0.918 28 H 0.065 0.935 29 H 0.071 0.929 30 H 0.049 0.951 31 H 0.089 0.911 32 H 0.117 0.883 33 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -7.614 4.458 -6.383 10.890 hybrid contribution 1.409 -0.278 0.656 1.579 sum -6.205 4.180 -5.726 9.422 Atomic orbital electron populations 1.21716 0.93667 1.01811 1.02132 1.21120 0.97173 0.96208 0.95977 1.21840 1.01136 0.94226 1.02815 1.22248 0.92963 0.82691 0.98306 0.93792 1.22177 0.95266 1.00226 0.98792 1.18697 0.94356 0.92281 0.92527 0.98753 1.21546 0.92875 1.34384 1.08482 0.93101 1.25762 1.02814 0.95033 0.95064 1.69997 1.36746 1.36493 1.12415 0.85604 0.80448 0.77597 0.78305 1.20012 1.20733 1.19442 1.22053 0.94100 1.00303 1.00976 1.22604 0.94857 0.95746 0.87652 1.87747 1.74663 1.24194 1.44640 0.92755 0.90968 0.93123 0.91288 0.90268 0.92333 0.92944 0.91752 0.93499 0.92939 0.95134 0.91113 0.88308 0.94293 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.33 9.05 71.98 0.65 -2.68 16 2 C -0.09 -2.49 2.72 -10.79 -0.03 -2.52 16 3 C -0.14 -3.51 8.84 71.98 0.64 -2.87 16 4 C 0.10 3.52 2.22 30.63 0.07 3.59 16 5 H 0.04 1.64 8.14 -2.39 -0.02 1.63 16 6 C -0.13 -5.45 4.22 30.69 0.13 -5.32 16 7 C 0.04 2.06 2.18 -11.42 -0.02 2.04 16 8 H -0.01 -0.32 8.14 -2.38 -0.02 -0.34 16 9 C -0.53 -30.24 8.57 25.60 0.22 -30.02 16 10 H 0.05 2.83 7.75 -2.91 -0.02 2.81 16 11 C 0.01 0.67 5.30 84.65 0.45 1.11 16 12 N -0.92 -53.41 11.36 21.45 0.24 -53.17 16 13 Si 0.95 44.12 29.54 68.60 2.03 46.14 16 14 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 15 H -0.28 -12.72 7.11 99.48 0.71 -12.02 16 16 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 17 C -0.14 -6.70 5.15 30.68 0.16 -6.54 16 18 C 0.07 2.75 6.84 72.01 0.49 3.25 16 19 O -0.39 -15.54 9.73 -148.98 -1.45 -16.99 16 20 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 21 H 0.07 1.42 8.14 -2.38 -0.02 1.40 16 22 H 0.05 1.35 7.68 -2.39 -0.02 1.33 16 23 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 24 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 25 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 26 H 0.05 1.40 6.49 -2.39 -0.02 1.38 16 27 H 0.06 2.63 6.58 -2.39 -0.02 2.61 16 28 H 0.05 2.06 8.14 -2.38 -0.02 2.04 16 29 H 0.26 14.44 8.31 -92.71 -0.77 13.67 16 30 H 0.03 1.53 8.14 -2.39 -0.02 1.51 16 31 H 0.07 3.85 6.18 -2.38 -0.01 3.83 16 32 H 0.10 3.50 8.14 -2.39 -0.02 3.48 16 33 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 Total: -1.00 -60.64 259.60 4.62 -56.02 By element: Atomic # 1 Polarization: 6.92 SS G_CDS: 1.05 Total: 7.97 kcal Atomic # 6 Polarization: -42.72 SS G_CDS: 2.75 Total: -39.97 kcal Atomic # 7 Polarization: -53.41 SS G_CDS: 0.24 Total: -53.17 kcal Atomic # 8 Polarization: -15.54 SS G_CDS: -1.45 Total: -16.99 kcal Atomic # 14 Polarization: 44.12 SS G_CDS: 2.03 Total: 46.14 kcal Total: -60.64 4.62 -56.02 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259774545.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.522 kcal (2) G-P(sol) polarization free energy of solvation -60.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.016 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds