Wall clock time and date at job start Mon Mar 30 2020 02:24:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 109.78523 * 2 1 4 4 C 1.54246 * 109.62679 * 239.51879 * 2 1 3 5 5 C 1.45542 * 112.40231 * 160.30823 * 4 2 1 6 6 C 1.54244 * 112.40887 * 61.93979 * 5 4 2 7 7 C 1.50474 * 108.51217 * 280.00063 * 6 5 4 8 8 C 1.54063 * 112.49858 * 94.15605 * 7 6 5 9 9 C 1.50472 * 109.62965 * 120.48028 * 2 1 3 10 10 O 1.42900 * 108.87618 * 93.07937 * 9 2 1 11 11 C 1.50696 * 108.87942 * 334.63832 * 9 2 1 12 12 H 1.08008 * 119.99590 * 275.05178 * 11 9 2 13 13 C 1.37871 * 120.00258 * 95.05017 * 11 9 2 14 14 N 1.31515 * 119.99918 * 176.26463 * 13 11 9 15 15 Si 1.86798 * 120.00084 * 356.26075 * 13 11 9 16 16 H 1.48502 * 109.47253 * 84.75833 * 15 13 11 17 17 H 1.48504 * 109.47315 * 204.76106 * 15 13 11 18 18 H 1.48508 * 109.47120 * 324.75547 * 15 13 11 19 19 H 1.09001 * 109.47179 * 186.13083 * 1 2 3 20 20 H 1.09003 * 109.46889 * 306.12762 * 1 2 3 21 21 H 1.08993 * 109.47370 * 66.12520 * 1 2 3 22 22 H 1.08999 * 108.89541 * 39.55740 * 4 2 1 23 23 H 1.09004 * 108.81853 * 281.01262 * 4 2 1 24 24 H 1.09000 * 108.89701 * 301.18387 * 5 4 2 25 25 H 1.08996 * 108.89297 * 182.69476 * 5 4 2 26 26 H 1.09000 * 109.62454 * 160.29161 * 6 5 4 27 27 H 1.09000 * 109.62767 * 39.70627 * 6 5 4 28 28 H 1.08996 * 108.87262 * 214.93457 * 7 6 5 29 29 H 1.09002 * 108.87754 * 333.37347 * 7 6 5 30 30 H 1.09000 * 108.81391 * 79.14050 * 8 7 6 31 31 H 1.08996 * 108.81390 * 197.42244 * 8 7 6 32 32 H 0.96706 * 114.00120 * 181.87296 * 10 9 2 33 33 H 0.97003 * 119.99690 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8989 1.0256 0.0000 4 6 2.0481 -0.7370 -1.2521 5 6 3.4277 -0.3954 -1.5656 6 6 4.4028 -0.7946 -0.4391 7 6 4.3396 0.2516 0.6406 8 6 3.3469 -0.1158 1.7600 9 6 2.0355 -0.7189 1.2214 10 8 2.2592 -2.0910 0.8908 11 6 0.9857 -0.6451 2.3000 12 1 0.9366 0.2180 2.9476 13 6 0.0880 -1.6791 2.4603 14 7 -0.7806 -1.6488 3.4473 15 14 0.1053 -3.1231 1.2754 16 1 1.1173 -4.1153 1.7190 17 1 -1.2358 -3.7605 1.2521 18 1 0.4481 -2.6415 -0.0869 19 1 -0.3633 -1.0218 0.1098 20 1 -0.3633 0.6059 0.8301 21 1 -0.3634 0.4159 -0.9396 22 1 1.4178 -0.4751 -2.1019 23 1 1.9805 -1.8113 -1.0808 24 1 3.4969 0.6803 -1.7276 25 1 3.7186 -0.9080 -2.4824 26 1 5.4166 -0.8511 -0.8355 27 1 4.1124 -1.7619 -0.0292 28 1 5.3323 0.3707 1.0746 29 1 4.0352 1.1991 0.1961 30 1 3.8191 -0.8387 2.4253 31 1 3.1123 0.7828 2.3306 32 1 2.5598 -2.6309 1.6346 33 1 -1.4120 -2.3765 3.5603 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259778196.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:57 Heat of formation + Delta-G solvation = -60.217554 kcal Electronic energy + Delta-G solvation = -14271.843833 eV Core-core repulsion = 12104.164546 eV Total energy + Delta-G solvation = -2167.679287 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.23967 -34.96801 -32.88836 -32.03302 -30.90837 -26.58509 -25.59966 -22.65208 -22.01963 -19.63783 -18.45858 -17.08840 -15.34353 -15.27942 -14.76306 -13.88749 -13.55111 -12.85803 -12.75589 -12.33272 -12.20356 -11.88747 -11.56419 -11.33615 -11.07815 -10.84482 -10.31002 -10.11768 -9.91685 -9.74917 -9.67311 -9.52002 -9.19842 -8.79618 -8.39621 -7.93825 -6.03589 -4.09612 3.48842 3.63973 3.84394 4.60403 5.22535 5.29011 5.36463 5.48483 5.57485 5.92183 5.93244 6.06864 6.07783 6.22651 6.31303 6.43255 6.57530 6.64890 6.70266 6.79057 6.83245 6.93322 6.97745 7.03794 7.09771 7.41989 7.51448 7.55744 7.76179 8.25640 8.75578 8.94359 9.57801 11.05791 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.042857 B = 0.017078 C = 0.016072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 653.176691 B = 1639.099734 C = 1741.688920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.060 4.060 3 H 0.057 0.943 4 C -0.122 4.122 5 C -0.103 4.103 6 C -0.122 4.122 7 C -0.116 4.116 8 C -0.126 4.126 9 C 0.227 3.773 10 O -0.553 6.553 11 C -0.551 4.551 12 H 0.074 0.926 13 C 0.062 3.938 14 N -0.899 5.899 15 Si 0.961 3.039 16 H -0.309 1.309 17 H -0.340 1.340 18 H -0.258 1.258 19 H 0.056 0.944 20 H 0.065 0.935 21 H 0.019 0.981 22 H 0.038 0.962 23 H 0.083 0.917 24 H 0.045 0.955 25 H 0.043 0.957 26 H 0.043 0.957 27 H 0.086 0.914 28 H 0.043 0.957 29 H 0.051 0.949 30 H 0.050 0.950 31 H 0.058 0.942 32 H 0.361 0.639 33 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.575 1.300 -7.260 10.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.079 4.079 3 H 0.075 0.925 4 C -0.160 4.160 5 C -0.140 4.140 6 C -0.160 4.160 7 C -0.153 4.153 8 C -0.164 4.164 9 C 0.188 3.812 10 O -0.362 6.362 11 C -0.588 4.588 12 H 0.092 0.908 13 C -0.141 4.141 14 N -0.535 5.535 15 Si 0.801 3.199 16 H -0.239 1.239 17 H -0.275 1.275 18 H -0.186 1.186 19 H 0.074 0.926 20 H 0.084 0.916 21 H 0.038 0.962 22 H 0.057 0.943 23 H 0.102 0.898 24 H 0.064 0.936 25 H 0.062 0.938 26 H 0.062 0.938 27 H 0.104 0.896 28 H 0.061 0.939 29 H 0.070 0.930 30 H 0.069 0.931 31 H 0.077 0.923 32 H 0.210 0.790 33 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 7.252 1.477 -7.731 10.702 hybrid contribution 0.114 -0.837 0.187 0.865 sum 7.366 0.640 -7.544 10.563 Atomic orbital electron populations 1.21881 0.95137 1.02476 0.98570 1.20897 0.95884 0.97435 0.93658 0.92493 1.20534 0.94888 1.03508 0.97025 1.20381 0.96372 0.99810 0.97485 1.21438 0.97271 1.01318 0.95942 1.21359 0.98306 0.98659 0.96990 1.22543 0.96233 1.00988 0.96650 1.19007 0.91399 0.78068 0.92727 1.86262 1.86031 1.23147 1.40805 1.21362 1.14432 1.06780 1.16255 0.90792 1.25248 0.94327 0.99189 0.95306 1.69978 1.20032 1.33102 1.30383 0.85599 0.72276 0.79198 0.82779 1.23904 1.27453 1.18575 0.92562 0.91569 0.96233 0.94285 0.89819 0.93611 0.93828 0.93809 0.89572 0.93864 0.93034 0.93081 0.92338 0.79004 0.92841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.74 7.77 37.16 0.29 -2.45 16 2 C -0.06 -1.24 2.07 -91.23 -0.19 -1.43 16 3 H 0.06 1.13 6.98 -51.93 -0.36 0.77 16 4 C -0.12 -2.30 4.43 -29.60 -0.13 -2.43 16 5 C -0.10 -1.67 5.26 -29.60 -0.16 -1.82 16 6 C -0.12 -1.96 5.61 -27.34 -0.15 -2.11 16 7 C -0.12 -1.89 5.31 -27.44 -0.15 -2.04 16 8 C -0.13 -2.44 4.94 -25.62 -0.13 -2.56 16 9 C 0.23 4.97 0.53 -92.48 -0.05 4.92 16 10 O -0.55 -11.84 3.64 -35.23 -0.13 -11.97 16 11 C -0.55 -14.62 6.64 -34.44 -0.23 -14.85 16 12 H 0.07 2.18 8.01 -52.48 -0.42 1.76 16 13 C 0.06 1.72 4.90 -17.82 -0.09 1.63 16 14 N -0.90 -27.13 13.96 55.43 0.77 -26.35 16 15 Si 0.96 23.92 22.02 -169.99 -3.74 20.17 16 16 H -0.31 -7.47 6.83 56.52 0.39 -7.08 16 17 H -0.34 -8.97 7.11 56.52 0.40 -8.57 16 18 H -0.26 -6.22 4.27 56.52 0.24 -5.98 16 19 H 0.06 1.34 3.53 -51.93 -0.18 1.16 16 20 H 0.07 1.57 7.14 -51.93 -0.37 1.20 16 21 H 0.02 0.37 8.02 -51.93 -0.42 -0.05 16 22 H 0.04 0.69 7.89 -51.93 -0.41 0.28 16 23 H 0.08 1.73 5.10 -51.93 -0.26 1.47 16 24 H 0.05 0.70 7.47 -51.93 -0.39 0.32 16 25 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 26 H 0.04 0.62 8.14 -51.93 -0.42 0.19 16 27 H 0.09 1.50 5.70 -51.93 -0.30 1.20 16 28 H 0.04 0.64 8.14 -51.93 -0.42 0.21 16 29 H 0.05 0.83 6.63 -51.93 -0.34 0.49 16 30 H 0.05 0.96 8.03 -51.93 -0.42 0.55 16 31 H 0.06 1.17 7.93 -51.93 -0.41 0.75 16 32 H 0.36 7.35 7.42 45.56 0.34 7.69 16 33 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 LS Contribution 227.86 15.07 3.43 3.43 Total: -1.00 -28.90 227.86 -5.17 -34.06 By element: Atomic # 1 Polarization: 8.33 SS G_CDS: -4.53 Total: 3.80 kcal Atomic # 6 Polarization: -22.17 SS G_CDS: -0.98 Total: -23.15 kcal Atomic # 7 Polarization: -27.13 SS G_CDS: 0.77 Total: -26.35 kcal Atomic # 8 Polarization: -11.84 SS G_CDS: -0.13 Total: -11.97 kcal Atomic # 14 Polarization: 23.92 SS G_CDS: -3.74 Total: 20.17 kcal Total LS contribution 3.43 Total: 3.43 kcal Total: -28.90 -5.17 -34.06 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259778196.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.155 kcal (2) G-P(sol) polarization free energy of solvation -28.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.063 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds