Wall clock time and date at job start Mon Mar 30 2020 02:24:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 109.78523 * 2 1 4 4 C 1.54246 * 109.62679 * 239.51879 * 2 1 3 5 5 C 1.45542 * 112.40231 * 160.30823 * 4 2 1 6 6 C 1.54244 * 112.40887 * 61.93979 * 5 4 2 7 7 C 1.50474 * 108.51217 * 280.00063 * 6 5 4 8 8 C 1.54063 * 112.49858 * 94.15605 * 7 6 5 9 9 C 1.50472 * 109.62965 * 120.48028 * 2 1 3 10 10 O 1.42900 * 108.87618 * 93.07937 * 9 2 1 11 11 C 1.50696 * 108.87942 * 334.63832 * 9 2 1 12 12 H 1.08008 * 119.99590 * 275.05178 * 11 9 2 13 13 C 1.37871 * 120.00258 * 95.05017 * 11 9 2 14 14 N 1.31515 * 119.99918 * 176.26463 * 13 11 9 15 15 Si 1.86798 * 120.00084 * 356.26075 * 13 11 9 16 16 H 1.48502 * 109.47253 * 84.75833 * 15 13 11 17 17 H 1.48504 * 109.47315 * 204.76106 * 15 13 11 18 18 H 1.48508 * 109.47120 * 324.75547 * 15 13 11 19 19 H 1.09001 * 109.47179 * 186.13083 * 1 2 3 20 20 H 1.09003 * 109.46889 * 306.12762 * 1 2 3 21 21 H 1.08993 * 109.47370 * 66.12520 * 1 2 3 22 22 H 1.08999 * 108.89541 * 39.55740 * 4 2 1 23 23 H 1.09004 * 108.81853 * 281.01262 * 4 2 1 24 24 H 1.09000 * 108.89701 * 301.18387 * 5 4 2 25 25 H 1.08996 * 108.89297 * 182.69476 * 5 4 2 26 26 H 1.09000 * 109.62454 * 160.29161 * 6 5 4 27 27 H 1.09000 * 109.62767 * 39.70627 * 6 5 4 28 28 H 1.08996 * 108.87262 * 214.93457 * 7 6 5 29 29 H 1.09002 * 108.87754 * 333.37347 * 7 6 5 30 30 H 1.09000 * 108.81391 * 79.14050 * 8 7 6 31 31 H 1.08996 * 108.81390 * 197.42244 * 8 7 6 32 32 H 0.96706 * 114.00120 * 181.87296 * 10 9 2 33 33 H 0.97003 * 119.99690 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8989 1.0256 0.0000 4 6 2.0481 -0.7370 -1.2521 5 6 3.4277 -0.3954 -1.5656 6 6 4.4028 -0.7946 -0.4391 7 6 4.3396 0.2516 0.6406 8 6 3.3469 -0.1158 1.7600 9 6 2.0355 -0.7189 1.2214 10 8 2.2592 -2.0910 0.8908 11 6 0.9857 -0.6451 2.3000 12 1 0.9366 0.2180 2.9476 13 6 0.0880 -1.6791 2.4603 14 7 -0.7806 -1.6488 3.4473 15 14 0.1053 -3.1231 1.2754 16 1 1.1173 -4.1153 1.7190 17 1 -1.2358 -3.7605 1.2521 18 1 0.4481 -2.6415 -0.0869 19 1 -0.3633 -1.0218 0.1098 20 1 -0.3633 0.6059 0.8301 21 1 -0.3634 0.4159 -0.9396 22 1 1.4178 -0.4751 -2.1019 23 1 1.9805 -1.8113 -1.0808 24 1 3.4969 0.6803 -1.7276 25 1 3.7186 -0.9080 -2.4824 26 1 5.4166 -0.8511 -0.8355 27 1 4.1124 -1.7619 -0.0292 28 1 5.3323 0.3707 1.0746 29 1 4.0352 1.1991 0.1961 30 1 3.8191 -0.8387 2.4253 31 1 3.1123 0.7828 2.3306 32 1 2.5598 -2.6309 1.6346 33 1 -1.4120 -2.3765 3.5603 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259778196.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:57 Heat of formation + Delta-G solvation = -79.757535 kcal Electronic energy + Delta-G solvation = -14272.691150 eV Core-core repulsion = 12104.164546 eV Total energy + Delta-G solvation = -2168.526604 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.86495 -36.52733 -34.70976 -33.81215 -32.58025 -28.25191 -27.44463 -24.30958 -23.58949 -20.99998 -20.13559 -19.12114 -17.31407 -16.96352 -16.25844 -15.40237 -15.13505 -14.66798 -14.46369 -13.97340 -13.80460 -13.60674 -13.16395 -13.03171 -12.84779 -12.56930 -11.97073 -11.84538 -11.61261 -11.32229 -11.02804 -11.02212 -10.92563 -10.74287 -10.39596 -9.74113 -8.24096 -6.31070 1.47489 1.59854 1.83941 2.50675 3.12451 3.67271 3.98481 4.09128 4.23146 4.39469 4.49428 4.55533 4.56400 4.76870 4.94030 4.94824 5.07721 5.10194 5.27007 5.32287 5.40750 5.46882 5.52037 5.57226 5.59581 5.68813 5.78132 5.89573 5.95361 6.15106 6.69283 6.97517 7.41578 8.89375 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.042857 B = 0.017078 C = 0.016072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 653.176691 B = 1639.099734 C = 1741.688920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.063 4.063 3 H 0.067 0.933 4 C -0.114 4.114 5 C -0.105 4.105 6 C -0.122 4.122 7 C -0.109 4.109 8 C -0.124 4.124 9 C 0.229 3.771 10 O -0.547 6.547 11 C -0.540 4.540 12 H 0.031 0.969 13 C 0.014 3.986 14 N -0.950 5.950 15 Si 1.017 2.983 16 H -0.294 1.294 17 H -0.363 1.363 18 H -0.243 1.243 19 H 0.036 0.964 20 H 0.036 0.964 21 H 0.048 0.952 22 H 0.050 0.950 23 H 0.066 0.934 24 H 0.058 0.942 25 H 0.063 0.937 26 H 0.070 0.930 27 H 0.072 0.928 28 H 0.064 0.936 29 H 0.056 0.944 30 H 0.052 0.948 31 H 0.043 0.957 32 H 0.366 0.634 33 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.765 1.190 -9.582 13.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.081 4.081 3 H 0.086 0.914 4 C -0.152 4.152 5 C -0.142 4.142 6 C -0.159 4.159 7 C -0.146 4.146 8 C -0.162 4.162 9 C 0.190 3.810 10 O -0.357 6.357 11 C -0.578 4.578 12 H 0.050 0.950 13 C -0.183 4.183 14 N -0.590 5.590 15 Si 0.856 3.144 16 H -0.223 1.223 17 H -0.300 1.300 18 H -0.169 1.169 19 H 0.055 0.945 20 H 0.055 0.945 21 H 0.067 0.933 22 H 0.069 0.931 23 H 0.084 0.916 24 H 0.076 0.924 25 H 0.082 0.918 26 H 0.088 0.912 27 H 0.090 0.910 28 H 0.083 0.917 29 H 0.075 0.925 30 H 0.070 0.930 31 H 0.062 0.938 32 H 0.216 0.784 33 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 9.483 1.379 -10.062 13.895 hybrid contribution -0.581 -0.707 0.967 1.332 sum 8.902 0.672 -9.095 12.744 Atomic orbital electron populations 1.21837 0.96523 1.00772 0.98937 1.20886 0.94735 0.98210 0.94318 0.91429 1.20463 0.96947 1.01815 0.95937 1.20381 0.94532 1.00914 0.98380 1.21437 0.98754 1.00117 0.95608 1.21301 0.98177 0.99056 0.96071 1.22442 0.95710 1.00166 0.97889 1.18966 0.91315 0.78859 0.91901 1.86233 1.85765 1.22832 1.40888 1.21654 1.15194 1.04656 1.16269 0.95048 1.25965 0.94056 1.01842 0.96452 1.70119 1.21758 1.34254 1.32868 0.84635 0.71382 0.76572 0.81770 1.22274 1.29962 1.16907 0.94507 0.94518 0.93318 0.93117 0.91585 0.92354 0.91789 0.91160 0.90966 0.91727 0.92478 0.92959 0.93786 0.78423 0.93168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.36 7.77 71.98 0.56 -4.80 16 2 C -0.06 -2.47 2.07 -11.19 -0.02 -2.49 16 3 H 0.07 2.52 6.98 -2.39 -0.02 2.51 16 4 C -0.11 -3.87 4.43 28.74 0.13 -3.75 16 5 C -0.10 -2.89 5.26 28.74 0.15 -2.74 16 6 C -0.12 -3.34 5.61 30.20 0.17 -3.17 16 7 C -0.11 -3.14 5.31 30.14 0.16 -2.98 16 8 C -0.12 -4.58 4.94 31.32 0.15 -4.43 16 9 C 0.23 9.74 0.53 -12.00 -0.01 9.73 16 10 O -0.55 -22.24 3.64 -148.98 -0.54 -22.78 16 11 C -0.54 -29.26 6.64 25.60 0.17 -29.09 16 12 H 0.03 1.93 8.01 -2.91 -0.02 1.91 16 13 C 0.01 0.77 4.90 84.65 0.41 1.19 16 14 N -0.95 -59.57 13.96 21.45 0.30 -59.27 16 15 Si 1.02 49.53 22.02 68.60 1.51 51.04 16 16 H -0.29 -13.42 6.83 99.48 0.68 -12.74 16 17 H -0.36 -19.04 7.11 99.48 0.71 -18.33 16 18 H -0.24 -11.09 4.27 99.48 0.43 -10.67 16 19 H 0.04 1.71 3.53 -2.39 -0.01 1.71 16 20 H 0.04 1.75 7.14 -2.39 -0.02 1.74 16 21 H 0.05 1.78 8.02 -2.39 -0.02 1.76 16 22 H 0.05 1.60 7.89 -2.39 -0.02 1.58 16 23 H 0.07 2.49 5.10 -2.38 -0.01 2.48 16 24 H 0.06 1.49 7.47 -2.39 -0.02 1.47 16 25 H 0.06 1.54 8.14 -2.39 -0.02 1.53 16 26 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 27 H 0.07 2.21 5.70 -2.39 -0.01 2.20 16 28 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 29 H 0.06 1.61 6.63 -2.39 -0.02 1.59 16 30 H 0.05 1.89 8.03 -2.39 -0.02 1.87 16 31 H 0.04 1.73 7.93 -2.39 -0.02 1.71 16 32 H 0.37 14.13 7.42 -74.05 -0.55 13.58 16 33 H 0.26 15.62 8.31 -92.71 -0.77 14.85 16 Total: -1.00 -63.00 227.86 3.38 -59.62 By element: Atomic # 1 Polarization: 13.68 SS G_CDS: 0.23 Total: 13.91 kcal Atomic # 6 Polarization: -44.40 SS G_CDS: 1.88 Total: -42.52 kcal Atomic # 7 Polarization: -59.57 SS G_CDS: 0.30 Total: -59.27 kcal Atomic # 8 Polarization: -22.24 SS G_CDS: -0.54 Total: -22.78 kcal Atomic # 14 Polarization: 49.53 SS G_CDS: 1.51 Total: 51.04 kcal Total: -63.00 3.38 -59.62 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259778196.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.134 kcal (2) G-P(sol) polarization free energy of solvation -63.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.623 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds