Wall clock time and date at job start Mon Mar 30 2020 02:25:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09006 * 108.78306 * 2 1 4 4 C 1.54073 * 108.81308 * 118.40257 * 2 1 3 5 5 C 1.50466 * 112.49697 * 162.58148 * 4 2 1 6 6 C 1.54245 * 108.52158 * 265.84648 * 5 4 2 7 7 C 1.45542 * 112.40378 * 79.98883 * 6 5 4 8 8 C 1.54246 * 112.40591 * 298.06558 * 7 6 5 9 9 C 1.50470 * 108.52233 * 79.98920 * 8 7 6 10 10 O 1.42907 * 108.80056 * 26.56880 * 9 8 7 11 11 C 1.50700 * 108.87784 * 145.07023 * 9 8 7 12 12 H 1.08002 * 119.99684 * 120.33765 * 11 9 8 13 13 C 1.37879 * 119.99819 * 300.33798 * 11 9 8 14 14 N 1.31515 * 120.00003 * 359.97438 * 13 11 9 15 15 Si 1.86804 * 119.99586 * 180.02562 * 13 11 9 16 16 H 1.48499 * 109.47310 * 359.97438 * 15 13 11 17 17 H 1.48500 * 109.46807 * 120.00124 * 15 13 11 18 18 H 1.48500 * 109.46866 * 239.99778 * 15 13 11 19 19 H 1.08996 * 109.47406 * 292.96896 * 1 2 3 20 20 H 1.09002 * 109.46839 * 52.96985 * 1 2 3 21 21 H 1.09001 * 109.46540 * 172.96089 * 1 2 3 22 22 H 1.08999 * 108.87206 * 41.80003 * 4 2 1 23 23 H 1.09001 * 108.79438 * 283.30816 * 4 2 1 24 24 H 1.09000 * 109.62764 * 146.14253 * 5 4 2 25 25 H 1.09000 * 109.78835 * 25.65015 * 5 4 2 26 26 H 1.08996 * 108.89793 * 200.74050 * 6 5 4 27 27 H 1.09000 * 108.89632 * 319.24130 * 6 5 4 28 28 H 1.08999 * 108.89656 * 58.81991 * 7 6 5 29 29 H 1.08998 * 108.89858 * 177.31011 * 7 6 5 30 30 H 1.08995 * 109.62322 * 320.27502 * 8 7 6 31 31 H 1.09000 * 109.78635 * 199.79301 * 8 7 6 32 32 H 0.96704 * 113.99051 * 57.07471 * 10 9 8 33 33 H 0.96999 * 119.99641 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8810 1.0320 0.0000 4 6 2.0269 -0.6937 1.2829 5 6 3.4681 -1.1155 1.1880 6 6 3.5191 -2.5835 0.7172 7 6 3.3394 -2.7112 -0.7214 8 6 1.9648 -2.1920 -1.1907 9 6 2.0270 -0.6915 -1.2839 10 8 3.3802 -0.3007 -1.5254 11 6 1.1754 -0.2393 -2.4421 12 1 0.3442 0.4291 -2.2726 13 6 1.4575 -0.6789 -3.7182 14 7 2.4700 -1.4925 -3.9246 15 14 0.4024 -0.1178 -5.1539 16 1 -0.6649 0.7887 -4.6594 17 1 1.2488 0.6038 -6.1379 18 1 -0.2158 -1.3002 -5.8057 19 1 -0.3634 0.4010 0.9461 20 1 -0.3633 0.6189 -0.8204 21 1 -0.3632 -1.0200 -0.1259 22 1 1.4128 -1.5751 1.4675 23 1 1.9153 -0.0050 2.1203 24 1 3.9403 -1.0284 2.1666 25 1 3.9914 -0.4827 0.4712 26 1 4.4843 -3.0089 0.9915 27 1 2.7321 -3.1437 1.2222 28 1 4.1218 -2.1447 -1.2265 29 1 3.4329 -3.7616 -0.9970 30 1 1.1989 -2.4829 -0.4718 31 1 1.7268 -2.6102 -2.1687 32 1 3.7677 -0.6949 -2.3189 33 1 2.6682 -1.8020 -4.8222 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259778203.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:00 Heat of formation + Delta-G solvation = -67.059145 kcal Electronic energy + Delta-G solvation = -14094.326763 eV Core-core repulsion = 11926.350802 eV Total energy + Delta-G solvation = -2167.975960 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -38.74106 -34.29709 -32.90647 -31.95125 -29.93254 -26.39677 -25.52489 -22.35409 -22.12949 -19.41363 -17.74251 -16.60218 -15.36625 -15.04570 -14.17888 -13.80939 -13.37314 -12.77710 -12.53468 -12.17937 -11.92576 -11.25385 -11.17983 -10.97502 -10.72237 -10.65011 -10.47015 -10.15475 -9.92090 -9.63634 -9.50910 -9.39785 -9.17498 -8.74037 -8.38157 -7.77757 -6.06119 -4.16059 3.25906 3.34835 3.38502 4.38638 5.17837 5.53805 5.65992 5.69618 5.93346 6.12765 6.18814 6.35283 6.42224 6.46640 6.56370 6.65120 6.76015 6.82559 6.93036 6.99744 7.07932 7.13906 7.19058 7.28868 7.33710 7.58439 7.78296 7.88823 8.10256 8.37566 8.88004 9.51491 9.72043 10.96047 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.045151 B = 0.014619 C = 0.012402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 619.992575 B = 1914.824538 C = 2257.161277 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.070 4.070 3 H 0.056 0.944 4 C -0.106 4.106 5 C -0.122 4.122 6 C -0.102 4.102 7 C -0.116 4.116 8 C -0.121 4.121 9 C 0.258 3.742 10 O -0.590 6.590 11 C -0.532 4.532 12 H 0.065 0.935 13 C 0.064 3.936 14 N -0.897 5.897 15 Si 0.893 3.107 16 H -0.274 1.274 17 H -0.285 1.285 18 H -0.285 1.285 19 H 0.029 0.971 20 H 0.063 0.937 21 H 0.049 0.951 22 H 0.049 0.951 23 H 0.039 0.961 24 H 0.039 0.961 25 H 0.092 0.908 26 H 0.038 0.962 27 H 0.041 0.959 28 H 0.073 0.927 29 H 0.030 0.970 30 H 0.030 0.970 31 H 0.085 0.915 32 H 0.377 0.623 33 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.161 -0.883 5.838 5.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.089 4.089 3 H 0.074 0.926 4 C -0.144 4.144 5 C -0.159 4.159 6 C -0.139 4.139 7 C -0.154 4.154 8 C -0.159 4.159 9 C 0.219 3.781 10 O -0.401 6.401 11 C -0.571 4.571 12 H 0.083 0.917 13 C -0.136 4.136 14 N -0.539 5.539 15 Si 0.721 3.279 16 H -0.199 1.199 17 H -0.211 1.211 18 H -0.211 1.211 19 H 0.048 0.952 20 H 0.082 0.918 21 H 0.068 0.932 22 H 0.068 0.932 23 H 0.058 0.942 24 H 0.058 0.942 25 H 0.111 0.889 26 H 0.057 0.943 27 H 0.060 0.940 28 H 0.092 0.908 29 H 0.049 0.951 30 H 0.048 0.952 31 H 0.103 0.897 32 H 0.229 0.771 33 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -0.178 -0.635 6.242 6.277 hybrid contribution -0.543 -0.173 -1.393 1.505 sum -0.721 -0.808 4.850 4.969 Atomic orbital electron populations 1.21834 0.96076 1.01678 0.99461 1.21392 0.94536 0.99204 0.93756 0.92588 1.21363 0.96433 0.99340 0.97251 1.21431 0.97225 0.97261 0.99987 1.20406 0.99312 0.96357 0.97870 1.20362 1.01066 0.98925 0.94999 1.21911 0.93825 0.99110 1.01030 1.18279 0.80402 0.89455 0.90002 1.86112 1.29323 1.75218 1.49465 1.22175 1.14400 1.28202 0.92295 0.91701 1.24995 0.95285 0.94443 0.98871 1.69646 1.28721 1.33710 1.21791 0.86525 0.80414 0.78467 0.82455 1.19870 1.21067 1.21136 0.95173 0.91779 0.93168 0.93197 0.94210 0.94243 0.88943 0.94303 0.94050 0.90826 0.95098 0.95161 0.89697 0.77070 0.92673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.63 8.25 37.16 0.31 -2.33 16 2 C -0.07 -1.51 2.23 -89.50 -0.20 -1.71 16 3 H 0.06 1.26 8.14 -51.93 -0.42 0.83 16 4 C -0.11 -2.00 4.66 -27.44 -0.13 -2.13 16 5 C -0.12 -2.27 5.60 -27.35 -0.15 -2.42 16 6 C -0.10 -1.88 5.26 -29.60 -0.16 -2.04 16 7 C -0.12 -2.44 5.16 -29.60 -0.15 -2.59 16 8 C -0.12 -2.82 4.52 -27.34 -0.12 -2.94 16 9 C 0.26 6.24 0.43 -92.48 -0.04 6.20 16 10 O -0.59 -14.91 8.99 -35.23 -0.32 -15.23 16 11 C -0.53 -14.07 7.48 -34.44 -0.26 -14.33 16 12 H 0.06 1.71 5.41 -52.49 -0.28 1.43 16 13 C 0.06 1.70 4.93 -17.82 -0.09 1.61 16 14 N -0.90 -23.86 9.84 55.43 0.55 -23.32 16 15 Si 0.89 20.85 29.54 -169.99 -5.02 15.83 16 16 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 17 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 18 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 19 H 0.03 0.51 8.12 -51.93 -0.42 0.08 16 20 H 0.06 1.32 5.92 -51.93 -0.31 1.02 16 21 H 0.05 0.99 7.30 -51.93 -0.38 0.62 16 22 H 0.05 0.92 6.47 -51.93 -0.34 0.58 16 23 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 24 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 25 H 0.09 1.93 5.72 -51.93 -0.30 1.64 16 26 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.04 0.73 7.47 -51.93 -0.39 0.34 16 28 H 0.07 1.65 5.70 -51.93 -0.30 1.36 16 29 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 30 H 0.03 0.67 6.19 -51.93 -0.32 0.35 16 31 H 0.08 2.22 5.88 -51.93 -0.31 1.91 16 32 H 0.38 9.91 6.05 45.56 0.28 10.18 16 33 H 0.26 6.75 8.31 -40.82 -0.34 6.41 16 LS Contribution 237.45 15.07 3.58 3.58 Total: -1.00 -26.16 237.45 -6.51 -32.67 By element: Atomic # 1 Polarization: 13.45 SS G_CDS: -4.31 Total: 9.15 kcal Atomic # 6 Polarization: -21.68 SS G_CDS: -0.99 Total: -22.67 kcal Atomic # 7 Polarization: -23.86 SS G_CDS: 0.55 Total: -23.32 kcal Atomic # 8 Polarization: -14.91 SS G_CDS: -0.32 Total: -15.23 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.83 kcal Total LS contribution 3.58 Total: 3.58 kcal Total: -26.16 -6.51 -32.67 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259778203.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.390 kcal (2) G-P(sol) polarization free energy of solvation -26.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.669 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds