Wall clock time and date at job start Mon Mar 30 2020 02:25:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09006 * 108.78306 * 2 1 4 4 C 1.54073 * 108.81308 * 118.40257 * 2 1 3 5 5 C 1.50466 * 112.49697 * 162.58148 * 4 2 1 6 6 C 1.54245 * 108.52158 * 265.84648 * 5 4 2 7 7 C 1.45542 * 112.40378 * 79.98883 * 6 5 4 8 8 C 1.54246 * 112.40591 * 298.06558 * 7 6 5 9 9 C 1.50470 * 108.52233 * 79.98920 * 8 7 6 10 10 O 1.42907 * 108.80056 * 26.56880 * 9 8 7 11 11 C 1.50700 * 108.87784 * 145.07023 * 9 8 7 12 12 H 1.08002 * 119.99684 * 120.33765 * 11 9 8 13 13 C 1.37879 * 119.99819 * 300.33798 * 11 9 8 14 14 N 1.31515 * 120.00003 * 359.97438 * 13 11 9 15 15 Si 1.86804 * 119.99586 * 180.02562 * 13 11 9 16 16 H 1.48499 * 109.47310 * 359.97438 * 15 13 11 17 17 H 1.48500 * 109.46807 * 120.00124 * 15 13 11 18 18 H 1.48500 * 109.46866 * 239.99778 * 15 13 11 19 19 H 1.08996 * 109.47406 * 292.96896 * 1 2 3 20 20 H 1.09002 * 109.46839 * 52.96985 * 1 2 3 21 21 H 1.09001 * 109.46540 * 172.96089 * 1 2 3 22 22 H 1.08999 * 108.87206 * 41.80003 * 4 2 1 23 23 H 1.09001 * 108.79438 * 283.30816 * 4 2 1 24 24 H 1.09000 * 109.62764 * 146.14253 * 5 4 2 25 25 H 1.09000 * 109.78835 * 25.65015 * 5 4 2 26 26 H 1.08996 * 108.89793 * 200.74050 * 6 5 4 27 27 H 1.09000 * 108.89632 * 319.24130 * 6 5 4 28 28 H 1.08999 * 108.89656 * 58.81991 * 7 6 5 29 29 H 1.08998 * 108.89858 * 177.31011 * 7 6 5 30 30 H 1.08995 * 109.62322 * 320.27502 * 8 7 6 31 31 H 1.09000 * 109.78635 * 199.79301 * 8 7 6 32 32 H 0.96704 * 113.99051 * 57.07471 * 10 9 8 33 33 H 0.96999 * 119.99641 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8810 1.0320 0.0000 4 6 2.0269 -0.6937 1.2829 5 6 3.4681 -1.1155 1.1880 6 6 3.5191 -2.5835 0.7172 7 6 3.3394 -2.7112 -0.7214 8 6 1.9648 -2.1920 -1.1907 9 6 2.0270 -0.6915 -1.2839 10 8 3.3802 -0.3007 -1.5254 11 6 1.1754 -0.2393 -2.4421 12 1 0.3442 0.4291 -2.2726 13 6 1.4575 -0.6789 -3.7182 14 7 2.4700 -1.4925 -3.9246 15 14 0.4024 -0.1178 -5.1539 16 1 -0.6649 0.7887 -4.6594 17 1 1.2488 0.6038 -6.1379 18 1 -0.2158 -1.3002 -5.8057 19 1 -0.3634 0.4010 0.9461 20 1 -0.3633 0.6189 -0.8204 21 1 -0.3632 -1.0200 -0.1259 22 1 1.4128 -1.5751 1.4675 23 1 1.9153 -0.0050 2.1203 24 1 3.9403 -1.0284 2.1666 25 1 3.9914 -0.4827 0.4712 26 1 4.4843 -3.0089 0.9915 27 1 2.7321 -3.1437 1.2222 28 1 4.1218 -2.1447 -1.2265 29 1 3.4329 -3.7616 -0.9970 30 1 1.1989 -2.4829 -0.4718 31 1 1.7268 -2.6102 -2.1687 32 1 3.7677 -0.6949 -2.3189 33 1 2.6682 -1.8020 -4.8222 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259778203.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:00 Heat of formation + Delta-G solvation = -82.116295 kcal Electronic energy + Delta-G solvation = -14094.979690 eV Core-core repulsion = 11926.350802 eV Total energy + Delta-G solvation = -2168.628888 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.47872 -36.06102 -34.58116 -33.94330 -31.67262 -28.11591 -27.36847 -24.12806 -23.77290 -20.96786 -19.57315 -18.53723 -17.27499 -16.79640 -15.95922 -15.57840 -15.02817 -14.39697 -14.27049 -13.91230 -13.56002 -13.03692 -12.99960 -12.68022 -12.47560 -12.37007 -12.23779 -11.99125 -11.52622 -11.45776 -11.17269 -10.97976 -10.86441 -10.55295 -10.36242 -9.71495 -8.06539 -6.22754 1.38607 1.42877 1.51765 2.43437 3.14584 4.00238 4.06326 4.17356 4.31993 4.55027 4.58713 4.73967 4.76148 4.84206 5.05993 5.10315 5.15892 5.17908 5.27535 5.37292 5.46403 5.49296 5.57900 5.63766 5.71082 5.80219 5.86503 6.04075 6.20841 6.41204 6.86315 7.47198 7.68295 8.93142 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.045151 B = 0.014619 C = 0.012402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 619.992575 B = 1914.824538 C = 2257.161277 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.073 4.073 3 H 0.039 0.961 4 C -0.103 4.103 5 C -0.121 4.121 6 C -0.102 4.102 7 C -0.108 4.108 8 C -0.114 4.114 9 C 0.249 3.751 10 O -0.594 6.594 11 C -0.554 4.554 12 H 0.060 0.940 13 C 0.023 3.977 14 N -0.911 5.911 15 Si 0.948 3.052 16 H -0.273 1.273 17 H -0.285 1.285 18 H -0.282 1.282 19 H 0.061 0.939 20 H 0.046 0.954 21 H 0.045 0.955 22 H 0.057 0.943 23 H 0.063 0.937 24 H 0.068 0.932 25 H 0.065 0.935 26 H 0.059 0.941 27 H 0.054 0.946 28 H 0.054 0.946 29 H 0.035 0.965 30 H 0.037 0.963 31 H 0.051 0.949 32 H 0.368 0.632 33 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.507 -1.062 7.193 7.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.092 4.092 3 H 0.058 0.942 4 C -0.141 4.141 5 C -0.158 4.158 6 C -0.139 4.139 7 C -0.146 4.146 8 C -0.152 4.152 9 C 0.210 3.790 10 O -0.403 6.403 11 C -0.592 4.592 12 H 0.078 0.922 13 C -0.175 4.175 14 N -0.553 5.553 15 Si 0.775 3.225 16 H -0.197 1.197 17 H -0.211 1.211 18 H -0.208 1.208 19 H 0.080 0.920 20 H 0.065 0.935 21 H 0.064 0.936 22 H 0.076 0.924 23 H 0.082 0.918 24 H 0.087 0.913 25 H 0.083 0.917 26 H 0.078 0.922 27 H 0.073 0.927 28 H 0.072 0.928 29 H 0.054 0.946 30 H 0.056 0.944 31 H 0.070 0.930 32 H 0.219 0.781 33 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -0.529 -0.811 7.609 7.670 hybrid contribution -0.428 -0.104 -1.826 1.878 sum -0.956 -0.914 5.782 5.932 Atomic orbital electron populations 1.21753 0.94852 1.01275 1.00522 1.21419 0.95624 0.98234 0.93936 0.94215 1.21340 0.96554 0.99916 0.96242 1.21404 0.96996 0.96625 1.00774 1.20379 1.00993 0.96770 0.95781 1.20278 0.98829 0.98615 0.96863 1.21737 0.95449 0.98523 0.99478 1.18480 0.79455 0.90211 0.90843 1.86141 1.30026 1.75345 1.48830 1.22508 1.14811 1.28342 0.93566 0.92237 1.25613 0.96359 0.94673 1.00889 1.69740 1.29412 1.34052 1.22055 0.85673 0.79031 0.77987 0.79823 1.19749 1.21091 1.20844 0.92001 0.93461 0.93563 0.92435 0.91820 0.91309 0.91658 0.92216 0.92691 0.92799 0.94635 0.94407 0.93004 0.78107 0.92733 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.82 8.25 71.98 0.59 -4.23 16 2 C -0.07 -3.07 2.23 -10.07 -0.02 -3.09 16 3 H 0.04 1.76 8.14 -2.38 -0.02 1.74 16 4 C -0.10 -3.57 4.66 30.14 0.14 -3.43 16 5 C -0.12 -4.16 5.60 30.20 0.17 -3.99 16 6 C -0.10 -3.49 5.26 28.74 0.15 -3.33 16 7 C -0.11 -4.46 5.16 28.74 0.15 -4.31 16 8 C -0.11 -5.29 4.52 30.20 0.14 -5.15 16 9 C 0.25 12.07 0.43 -12.00 -0.01 12.06 16 10 O -0.59 -30.42 8.99 -148.98 -1.34 -31.76 16 11 C -0.55 -29.58 7.48 25.60 0.19 -29.39 16 12 H 0.06 3.17 5.41 -2.91 -0.02 3.16 16 13 C 0.02 1.25 4.93 84.66 0.42 1.66 16 14 N -0.91 -49.18 9.84 21.45 0.21 -48.97 16 15 Si 0.95 43.08 29.54 68.60 2.03 45.11 16 16 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 17 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 18 H -0.28 -12.63 7.11 99.48 0.71 -11.93 16 19 H 0.06 1.93 8.12 -2.39 -0.02 1.91 16 20 H 0.05 1.92 5.92 -2.39 -0.01 1.91 16 21 H 0.05 1.76 7.30 -2.39 -0.02 1.75 16 22 H 0.06 1.91 6.47 -2.39 -0.02 1.90 16 23 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 24 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 25 H 0.06 2.64 5.72 -2.39 -0.01 2.63 16 26 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 27 H 0.05 1.75 7.47 -2.39 -0.02 1.73 16 28 H 0.05 2.42 5.70 -2.39 -0.01 2.41 16 29 H 0.03 1.39 8.14 -2.39 -0.02 1.37 16 30 H 0.04 1.65 6.19 -2.39 -0.01 1.64 16 31 H 0.05 2.74 5.88 -2.39 -0.01 2.73 16 32 H 0.37 19.88 6.05 -74.05 -0.45 19.43 16 33 H 0.26 13.66 8.31 -92.71 -0.77 12.89 16 Total: -1.00 -55.12 237.45 3.47 -51.65 By element: Atomic # 1 Polarization: 26.53 SS G_CDS: 0.65 Total: 27.18 kcal Atomic # 6 Polarization: -45.13 SS G_CDS: 1.92 Total: -43.21 kcal Atomic # 7 Polarization: -49.18 SS G_CDS: 0.21 Total: -48.97 kcal Atomic # 8 Polarization: -30.42 SS G_CDS: -1.34 Total: -31.76 kcal Atomic # 14 Polarization: 43.08 SS G_CDS: 2.03 Total: 45.11 kcal Total: -55.12 3.47 -51.65 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259778203.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.462 kcal (2) G-P(sol) polarization free energy of solvation -55.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.655 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds