Wall clock time and date at job start Mon Mar 30 2020 02:25:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08999 * 108.78599 * 2 1 4 4 C 1.54059 * 108.81506 * 241.69445 * 2 1 3 5 5 C 1.50553 * 112.41659 * 197.42128 * 4 2 1 6 6 C 1.54249 * 108.48366 * 94.26455 * 5 4 2 7 7 C 1.45534 * 112.32726 * 279.88523 * 6 5 4 8 8 C 1.54240 * 112.41074 * 61.98181 * 7 6 5 9 9 C 1.50470 * 108.52025 * 280.00892 * 8 7 6 10 10 O 1.42895 * 108.87716 * 333.36905 * 9 8 7 11 11 C 1.50704 * 108.87236 * 214.92677 * 9 8 7 12 12 H 1.07998 * 120.00317 * 354.66473 * 11 9 8 13 13 C 1.37879 * 119.99920 * 174.66448 * 11 9 8 14 14 N 1.31514 * 119.99955 * 185.27769 * 13 11 9 15 15 Si 1.86808 * 119.99881 * 5.27936 * 13 11 9 16 16 H 1.48497 * 109.46797 * 84.73619 * 15 13 11 17 17 H 1.48492 * 109.46874 * 204.73520 * 15 13 11 18 18 H 1.48491 * 109.46899 * 324.73343 * 15 13 11 19 19 H 1.09001 * 109.47441 * 306.84348 * 1 2 3 20 20 H 1.09006 * 109.46793 * 66.84139 * 1 2 3 21 21 H 1.09002 * 109.47380 * 186.84130 * 1 2 3 22 22 H 1.08997 * 108.87873 * 318.20032 * 4 2 1 23 23 H 1.09002 * 108.87815 * 76.74972 * 4 2 1 24 24 H 1.09002 * 109.72154 * 334.52638 * 5 4 2 25 25 H 1.08999 * 109.58005 * 213.92347 * 5 4 2 26 26 H 1.09004 * 108.88962 * 159.18295 * 6 5 4 27 27 H 1.08992 * 108.89393 * 40.59198 * 6 5 4 28 28 H 1.09004 * 108.89713 * 182.74067 * 7 6 5 29 29 H 1.09006 * 108.89854 * 301.32360 * 7 6 5 30 30 H 1.09000 * 109.62308 * 39.71961 * 8 7 6 31 31 H 1.09001 * 109.62581 * 160.09533 * 8 7 6 32 32 H 0.96695 * 114.00290 * 300.00320 * 10 9 8 33 33 H 0.97002 * 119.99405 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8810 1.0319 0.0000 4 6 2.0268 -0.6915 -1.2839 5 6 3.4689 -1.1129 -1.1877 6 6 3.5189 -2.5824 -0.7214 7 6 3.3391 -2.7125 0.7169 8 6 1.9646 -2.1941 1.1870 9 6 2.0268 -0.6938 1.2828 10 8 3.3792 -0.3018 1.5264 11 6 1.1751 -0.2436 2.4417 12 1 0.5806 -0.9622 2.9862 13 6 1.1549 1.0858 2.8069 14 7 0.4949 1.4629 3.8801 15 14 2.0650 2.3512 1.7773 16 1 1.2000 2.7884 0.6522 17 1 2.4078 3.5230 2.6225 18 1 3.3104 1.7480 1.2388 19 1 -0.3634 0.6162 0.8224 20 1 -0.3633 0.4042 -0.9449 21 1 -0.3634 -1.0203 0.1224 22 1 1.4128 -1.5726 -1.4702 23 1 1.9168 -0.0020 -2.1210 24 1 3.9892 -0.4822 -0.4668 25 1 3.9418 -1.0228 -2.1656 26 1 4.4843 -3.0073 -0.9964 27 1 2.7311 -3.1403 -1.2275 28 1 3.4326 -3.7634 0.9908 29 1 4.1205 -2.1455 1.2231 30 1 1.1986 -2.4837 0.4675 31 1 1.7282 -2.6170 2.1634 32 1 3.7517 -0.6609 2.3432 33 1 0.4811 2.3982 4.1372 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259778205.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:01 Heat of formation + Delta-G solvation = -76.589195 kcal Electronic energy + Delta-G solvation = -14216.735433 eV Core-core repulsion = 12048.346219 eV Total energy + Delta-G solvation = -2168.389214 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.74184 -36.15082 -35.03300 -33.89422 -32.07114 -28.38870 -27.42152 -24.11904 -23.82709 -21.15488 -19.79290 -18.84423 -17.36375 -16.78464 -16.35440 -15.50007 -15.14697 -14.70802 -14.35563 -14.14931 -13.60264 -13.54159 -13.04867 -12.85073 -12.73148 -12.42095 -12.12140 -11.83485 -11.70432 -11.50359 -11.09337 -10.95578 -10.94454 -10.68797 -10.41367 -9.77844 -8.30084 -6.36329 1.37068 1.44945 1.69420 2.43654 3.09313 3.75735 3.93784 4.07074 4.24002 4.46924 4.50933 4.56416 4.58787 4.70771 4.96142 5.00566 5.01766 5.07339 5.20028 5.27783 5.39448 5.44237 5.48462 5.53664 5.60922 5.72782 5.74721 5.83649 5.95542 6.19362 6.71991 7.28305 7.46638 8.84932 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.042247 B = 0.016761 C = 0.015849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 662.612071 B = 1670.098383 C = 1766.262371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.083 4.083 3 H 0.038 0.962 4 C -0.106 4.106 5 C -0.125 4.125 6 C -0.103 4.103 7 C -0.116 4.116 8 C -0.121 4.121 9 C 0.230 3.770 10 O -0.573 6.573 11 C -0.535 4.535 12 H 0.032 0.968 13 C 0.037 3.963 14 N -0.945 5.945 15 Si 0.930 3.070 16 H -0.287 1.287 17 H -0.322 1.322 18 H -0.202 1.202 19 H 0.034 0.966 20 H 0.055 0.945 21 H 0.054 0.946 22 H 0.065 0.935 23 H 0.058 0.942 24 H 0.070 0.930 25 H 0.067 0.933 26 H 0.067 0.933 27 H 0.056 0.944 28 H 0.058 0.942 29 H 0.071 0.929 30 H 0.059 0.941 31 H 0.041 0.959 32 H 0.365 0.635 33 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.951 -6.055 -10.526 13.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.102 4.102 3 H 0.056 0.944 4 C -0.144 4.144 5 C -0.162 4.162 6 C -0.140 4.140 7 C -0.153 4.153 8 C -0.159 4.159 9 C 0.190 3.810 10 O -0.381 6.381 11 C -0.573 4.573 12 H 0.050 0.950 13 C -0.162 4.162 14 N -0.585 5.585 15 Si 0.758 3.242 16 H -0.214 1.214 17 H -0.252 1.252 18 H -0.124 1.124 19 H 0.054 0.946 20 H 0.074 0.926 21 H 0.073 0.927 22 H 0.084 0.916 23 H 0.076 0.924 24 H 0.089 0.911 25 H 0.086 0.914 26 H 0.086 0.914 27 H 0.075 0.925 28 H 0.076 0.924 29 H 0.089 0.911 30 H 0.077 0.923 31 H 0.060 0.940 32 H 0.213 0.787 33 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 5.820 -5.644 -11.000 13.665 hybrid contribution -0.309 0.738 0.908 1.210 sum 5.511 -4.906 -10.092 12.502 Atomic orbital electron populations 1.21700 0.95224 1.01568 0.99885 1.21708 0.95639 0.98226 0.94616 0.94414 1.21403 0.97315 1.00134 0.95533 1.21484 0.96220 0.97282 1.01205 1.20356 1.01615 0.96107 0.95961 1.20420 0.97290 1.00134 0.97458 1.21803 0.98071 0.96199 0.99860 1.18685 0.79657 0.91550 0.91081 1.86531 1.29478 1.76566 1.45556 1.21884 1.27304 0.93414 1.14722 0.95019 1.25653 0.94808 1.00683 0.95045 1.70096 1.44706 1.17265 1.26442 0.86367 0.82956 0.76931 0.77900 1.21389 1.25217 1.12432 0.94644 0.92603 0.92739 0.91589 0.92372 0.91134 0.91396 0.91449 0.92505 0.92357 0.91056 0.92272 0.94007 0.78702 0.93006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.21 8.10 71.98 0.58 -4.63 16 2 C -0.08 -3.42 1.53 -10.08 -0.02 -3.44 16 3 H 0.04 1.69 3.80 -2.39 -0.01 1.68 16 4 C -0.11 -3.44 4.67 30.16 0.14 -3.29 16 5 C -0.12 -3.69 5.61 30.23 0.17 -3.52 16 6 C -0.10 -2.75 5.27 28.74 0.15 -2.59 16 7 C -0.12 -3.48 5.17 28.73 0.15 -3.33 16 8 C -0.12 -4.55 4.93 30.20 0.15 -4.40 16 9 C 0.23 9.95 0.29 -12.00 0.00 9.95 16 10 O -0.57 -23.81 5.69 -148.98 -0.85 -24.66 16 11 C -0.54 -29.20 6.95 25.60 0.18 -29.02 16 12 H 0.03 1.94 7.73 -2.91 -0.02 1.92 16 13 C 0.04 2.11 4.71 84.66 0.40 2.51 16 14 N -0.94 -59.15 13.96 21.45 0.30 -58.85 16 15 Si 0.93 46.34 23.19 68.60 1.59 47.93 16 16 H -0.29 -14.07 6.98 99.48 0.69 -13.37 16 17 H -0.32 -16.59 7.11 99.48 0.71 -15.88 16 18 H -0.20 -9.42 5.30 99.48 0.53 -8.90 16 19 H 0.03 1.70 6.05 -2.39 -0.01 1.69 16 20 H 0.06 1.95 8.12 -2.38 -0.02 1.94 16 21 H 0.05 2.12 7.30 -2.39 -0.02 2.11 16 22 H 0.07 1.97 6.47 -2.39 -0.02 1.95 16 23 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 24 H 0.07 2.44 5.69 -2.39 -0.01 2.43 16 25 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 26 H 0.07 1.53 8.14 -2.38 -0.02 1.51 16 27 H 0.06 1.42 7.46 -2.39 -0.02 1.41 16 28 H 0.06 1.55 8.14 -2.38 -0.02 1.53 16 29 H 0.07 2.20 5.77 -2.38 -0.01 2.19 16 30 H 0.06 2.13 6.19 -2.39 -0.01 2.12 16 31 H 0.04 1.68 7.52 -2.39 -0.02 1.67 16 32 H 0.36 13.90 8.22 -74.06 -0.61 13.29 16 33 H 0.26 15.63 8.31 -92.71 -0.77 14.86 16 Total: -1.00 -63.10 230.68 3.24 -59.86 By element: Atomic # 1 Polarization: 17.20 SS G_CDS: 0.30 Total: 17.50 kcal Atomic # 6 Polarization: -43.67 SS G_CDS: 1.90 Total: -41.77 kcal Atomic # 7 Polarization: -59.15 SS G_CDS: 0.30 Total: -58.85 kcal Atomic # 8 Polarization: -23.81 SS G_CDS: -0.85 Total: -24.66 kcal Atomic # 14 Polarization: 46.34 SS G_CDS: 1.59 Total: 47.93 kcal Total: -63.10 3.24 -59.86 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259778205.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.730 kcal (2) G-P(sol) polarization free energy of solvation -63.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.859 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds