Wall clock time and date at job start Mon Mar 30 2020 02:31:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42899 * 113.99778 * 2 1 4 4 H 1.08997 * 108.78450 * 28.41144 * 3 2 1 5 5 C 1.54063 * 108.81675 * 270.00147 * 3 2 1 6 6 C 1.50468 * 112.50014 * 197.41941 * 5 3 2 7 7 C 1.54248 * 108.51502 * 94.15451 * 6 5 3 8 8 C 1.45546 * 112.40433 * 280.01261 * 7 6 5 9 9 C 1.54240 * 112.40871 * 61.93601 * 8 7 6 10 10 C 1.50471 * 108.52219 * 280.01481 * 9 8 7 11 11 H 1.08996 * 108.87722 * 333.37271 * 10 9 8 12 12 C 1.50698 * 108.87849 * 214.92526 * 10 9 8 13 13 H 1.08006 * 120.00235 * 237.02591 * 12 10 9 14 14 C 1.37880 * 119.99922 * 57.02342 * 12 10 9 15 15 N 1.31509 * 119.99966 * 0.02562 * 14 12 10 16 16 Si 1.86801 * 119.99919 * 180.02562 * 14 12 10 17 17 H 1.48501 * 109.47195 * 90.00304 * 16 14 12 18 18 H 1.48500 * 109.46933 * 210.00162 * 16 14 12 19 19 H 1.48503 * 109.47245 * 330.00292 * 16 14 12 20 20 H 1.09001 * 109.47103 * 180.02562 * 1 2 3 21 21 H 1.09004 * 109.47054 * 299.99711 * 1 2 3 22 22 H 1.09000 * 109.47187 * 59.99767 * 1 2 3 23 23 H 1.09005 * 108.87472 * 318.20266 * 5 3 2 24 24 H 1.09003 * 108.87253 * 76.63861 * 5 3 2 25 25 H 1.09003 * 109.63138 * 213.85759 * 6 5 3 26 26 H 1.08996 * 109.63213 * 334.25052 * 6 5 3 27 27 H 1.08999 * 108.89655 * 40.76633 * 7 6 5 28 28 H 1.08994 * 108.89428 * 159.35966 * 7 6 5 29 29 H 1.08996 * 108.89586 * 182.69105 * 8 7 6 30 30 H 1.09000 * 108.89221 * 301.28054 * 8 7 6 31 31 H 1.09003 * 109.62941 * 39.72403 * 9 8 7 32 32 H 1.08996 * 109.62741 * 160.10668 * 9 8 7 33 33 H 0.97001 * 120.00002 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3238 1.9952 0.4910 5 6 2.2123 1.7594 -1.4583 6 6 3.1786 2.9068 -1.5755 7 6 4.5835 2.3370 -1.8597 8 6 5.2382 1.8487 -0.6550 9 6 4.4659 0.6880 0.0047 10 6 3.3260 1.2636 0.8005 11 1 3.5854 2.2772 1.1058 12 6 3.1194 0.4233 2.0343 13 1 2.1574 -0.0292 2.2247 14 6 4.1586 0.2322 2.9201 15 7 5.3299 0.7836 2.6885 16 14 3.9029 -0.8099 4.4492 17 1 4.2312 -2.2257 4.1439 18 1 4.7881 -0.3198 5.5360 19 1 2.4860 -0.7128 4.8831 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5139 -0.8900 23 1 2.5905 0.9188 -2.0401 24 1 1.2500 2.0654 -1.8689 25 1 2.8754 3.5588 -2.3948 26 1 3.1912 3.4718 -0.6435 27 1 4.4941 1.5154 -2.5705 28 1 5.1993 3.1202 -2.3017 29 1 6.2400 1.5050 -0.9123 30 1 5.3192 2.6680 0.0594 31 1 4.0756 0.0232 -0.7660 32 1 5.1328 0.1324 0.6639 33 1 6.0609 0.6495 3.3118 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259821632.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:41 Heat of formation + Delta-G solvation = -64.247463 kcal Electronic energy + Delta-G solvation = -13686.445890 eV Core-core repulsion = 11518.591854 eV Total energy + Delta-G solvation = -2167.854037 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -38.53449 -35.91747 -33.21258 -30.73190 -30.08073 -25.97519 -25.38524 -23.19797 -22.39156 -19.62359 -18.29917 -16.45115 -15.42703 -15.18506 -14.40658 -14.12653 -13.86751 -13.33861 -12.58036 -12.30460 -12.19055 -11.85994 -11.36942 -11.11009 -10.83163 -10.73062 -10.51443 -10.28204 -9.90993 -9.84093 -9.53628 -9.46227 -8.95552 -8.56218 -8.47910 -8.06717 -5.84131 -3.88043 3.39002 3.45097 3.48769 4.55205 4.73270 5.40468 5.44878 5.51316 5.60379 5.82583 5.89131 6.10821 6.13111 6.17191 6.20216 6.32950 6.39582 6.55919 6.62133 6.85842 6.88230 6.95514 7.03162 7.14915 7.44303 7.71562 7.84492 8.03595 8.25636 8.28828 8.68646 9.16113 9.73753 11.20487 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.032404 B = 0.014926 C = 0.010836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 863.889462 B = 1875.523949 C = 2583.396553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.365 6.365 3 C 0.100 3.900 4 H 0.036 0.964 5 C -0.137 4.137 6 C -0.110 4.110 7 C -0.108 4.108 8 C -0.115 4.115 9 C -0.093 4.093 10 C 0.051 3.949 11 H 0.032 0.968 12 C -0.493 4.493 13 H 0.059 0.941 14 C 0.054 3.946 15 N -0.892 5.892 16 Si 0.888 3.112 17 H -0.283 1.283 18 H -0.290 1.290 19 H -0.277 1.277 20 H 0.072 0.928 21 H 0.033 0.967 22 H 0.025 0.975 23 H 0.065 0.935 24 H 0.040 0.960 25 H 0.049 0.951 26 H 0.066 0.934 27 H 0.049 0.951 28 H 0.041 0.959 29 H 0.037 0.963 30 H 0.056 0.944 31 H 0.027 0.973 32 H 0.091 0.909 33 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.536 2.249 -6.689 8.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.283 6.283 3 C 0.042 3.958 4 H 0.055 0.945 5 C -0.175 4.175 6 C -0.148 4.148 7 C -0.145 4.145 8 C -0.153 4.153 9 C -0.130 4.130 10 C 0.033 3.967 11 H 0.050 0.950 12 C -0.532 4.532 13 H 0.077 0.923 14 C -0.146 4.146 15 N -0.532 5.532 16 Si 0.717 3.283 17 H -0.209 1.209 18 H -0.216 1.216 19 H -0.202 1.202 20 H 0.090 0.910 21 H 0.052 0.948 22 H 0.043 0.957 23 H 0.084 0.916 24 H 0.059 0.941 25 H 0.068 0.932 26 H 0.085 0.915 27 H 0.068 0.932 28 H 0.060 0.940 29 H 0.056 0.944 30 H 0.075 0.925 31 H 0.046 0.954 32 H 0.109 0.891 33 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -4.247 2.098 -6.602 8.126 hybrid contribution -0.333 -0.326 0.817 0.941 sum -4.581 1.772 -5.784 7.588 Atomic orbital electron populations 1.22633 0.84099 1.01210 0.98592 1.88061 1.16769 1.28873 1.94610 1.22876 0.97335 0.82793 0.92777 0.94537 1.21850 0.98069 0.98590 0.98965 1.21207 0.95248 0.97245 1.01061 1.20505 0.95825 0.99189 0.98999 1.20444 0.98157 1.00369 0.96326 1.21287 0.98601 0.95849 0.97301 1.18652 0.88073 0.97226 0.92727 0.94983 1.21239 0.97390 1.30017 1.04550 0.92324 1.24938 0.95410 0.96243 0.97972 1.69963 1.01876 1.44877 1.36471 0.86657 0.77781 0.80721 0.83149 1.20906 1.21563 1.20191 0.90979 0.94848 0.95681 0.91620 0.94140 0.93181 0.91488 0.93201 0.93976 0.94407 0.92493 0.95406 0.89067 0.93365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.55 10.79 101.05 1.09 1.64 16 2 O -0.36 -8.06 8.89 -35.23 -0.31 -8.37 16 3 C 0.10 2.15 2.26 -25.62 -0.06 2.09 16 4 H 0.04 0.77 7.72 -51.93 -0.40 0.37 16 5 C -0.14 -2.49 4.90 -27.44 -0.13 -2.62 16 6 C -0.11 -1.87 5.60 -27.34 -0.15 -2.02 16 7 C -0.11 -1.89 5.26 -29.59 -0.16 -2.04 16 8 C -0.12 -2.41 5.27 -29.60 -0.16 -2.57 16 9 C -0.09 -2.25 4.67 -27.35 -0.13 -2.37 16 10 C 0.05 1.29 1.54 -92.48 -0.14 1.15 16 11 H 0.03 0.86 6.64 -51.93 -0.34 0.52 16 12 C -0.49 -13.81 8.04 -34.44 -0.28 -14.09 16 13 H 0.06 1.67 7.01 -52.48 -0.37 1.30 16 14 C 0.05 1.52 5.02 -17.82 -0.09 1.43 16 15 N -0.89 -25.58 11.36 55.43 0.63 -24.95 16 16 Si 0.89 21.89 29.54 -169.99 -5.02 16.87 16 17 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 18 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 19 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 20 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 21 H 0.03 0.56 8.07 -51.93 -0.42 0.14 16 22 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 23 H 0.07 1.24 6.63 -51.93 -0.34 0.89 16 24 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 25 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 26 H 0.07 1.21 6.99 -51.93 -0.36 0.85 16 27 H 0.05 0.85 7.47 -51.93 -0.39 0.46 16 28 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16 30 H 0.06 1.27 7.47 -51.93 -0.39 0.88 16 31 H 0.03 0.66 6.98 -51.93 -0.36 0.30 16 32 H 0.09 2.52 5.65 -51.93 -0.29 2.23 16 33 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 LS Contribution 252.24 15.07 3.80 3.80 Total: -1.00 -28.83 252.24 -6.45 -35.28 By element: Atomic # 1 Polarization: 2.13 SS G_CDS: -5.34 Total: -3.21 kcal Atomic # 6 Polarization: -19.21 SS G_CDS: -0.20 Total: -19.42 kcal Atomic # 7 Polarization: -25.58 SS G_CDS: 0.63 Total: -24.95 kcal Atomic # 8 Polarization: -8.06 SS G_CDS: -0.31 Total: -8.37 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 3.80 Total: 3.80 kcal Total: -28.83 -6.45 -35.28 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259821632.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.968 kcal (2) G-P(sol) polarization free energy of solvation -28.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.279 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds