Wall clock time and date at job start Mon Mar 30 2020 02:31:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42899 * 113.99778 * 2 1 4 4 H 1.08997 * 108.78450 * 28.41144 * 3 2 1 5 5 C 1.54063 * 108.81675 * 270.00147 * 3 2 1 6 6 C 1.50468 * 112.50014 * 197.41941 * 5 3 2 7 7 C 1.54248 * 108.51502 * 94.15451 * 6 5 3 8 8 C 1.45546 * 112.40433 * 280.01261 * 7 6 5 9 9 C 1.54240 * 112.40871 * 61.93601 * 8 7 6 10 10 C 1.50471 * 108.52219 * 280.01481 * 9 8 7 11 11 H 1.08996 * 108.87722 * 333.37271 * 10 9 8 12 12 C 1.50698 * 108.87849 * 214.92526 * 10 9 8 13 13 H 1.08006 * 120.00235 * 237.02591 * 12 10 9 14 14 C 1.37880 * 119.99922 * 57.02342 * 12 10 9 15 15 N 1.31509 * 119.99966 * 0.02562 * 14 12 10 16 16 Si 1.86801 * 119.99919 * 180.02562 * 14 12 10 17 17 H 1.48501 * 109.47195 * 90.00304 * 16 14 12 18 18 H 1.48500 * 109.46933 * 210.00162 * 16 14 12 19 19 H 1.48503 * 109.47245 * 330.00292 * 16 14 12 20 20 H 1.09001 * 109.47103 * 180.02562 * 1 2 3 21 21 H 1.09004 * 109.47054 * 299.99711 * 1 2 3 22 22 H 1.09000 * 109.47187 * 59.99767 * 1 2 3 23 23 H 1.09005 * 108.87472 * 318.20266 * 5 3 2 24 24 H 1.09003 * 108.87253 * 76.63861 * 5 3 2 25 25 H 1.09003 * 109.63138 * 213.85759 * 6 5 3 26 26 H 1.08996 * 109.63213 * 334.25052 * 6 5 3 27 27 H 1.08999 * 108.89655 * 40.76633 * 7 6 5 28 28 H 1.08994 * 108.89428 * 159.35966 * 7 6 5 29 29 H 1.08996 * 108.89586 * 182.69105 * 8 7 6 30 30 H 1.09000 * 108.89221 * 301.28054 * 8 7 6 31 31 H 1.09003 * 109.62941 * 39.72403 * 9 8 7 32 32 H 1.08996 * 109.62741 * 160.10668 * 9 8 7 33 33 H 0.97001 * 120.00002 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3238 1.9952 0.4910 5 6 2.2123 1.7594 -1.4583 6 6 3.1786 2.9068 -1.5755 7 6 4.5835 2.3370 -1.8597 8 6 5.2382 1.8487 -0.6550 9 6 4.4659 0.6880 0.0047 10 6 3.3260 1.2636 0.8005 11 1 3.5854 2.2772 1.1058 12 6 3.1194 0.4233 2.0343 13 1 2.1574 -0.0292 2.2247 14 6 4.1586 0.2322 2.9201 15 7 5.3299 0.7836 2.6885 16 14 3.9029 -0.8099 4.4492 17 1 4.2312 -2.2257 4.1439 18 1 4.7881 -0.3198 5.5360 19 1 2.4860 -0.7128 4.8831 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5139 -0.8900 23 1 2.5905 0.9188 -2.0401 24 1 1.2500 2.0654 -1.8689 25 1 2.8754 3.5588 -2.3948 26 1 3.1912 3.4718 -0.6435 27 1 4.4941 1.5154 -2.5705 28 1 5.1993 3.1202 -2.3017 29 1 6.2400 1.5050 -0.9123 30 1 5.3192 2.6680 0.0594 31 1 4.0756 0.0232 -0.7660 32 1 5.1328 0.1324 0.6639 33 1 6.0609 0.6495 3.3118 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259821632.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:40 Heat of formation + Delta-G solvation = -81.143912 kcal Electronic energy + Delta-G solvation = -13687.178575 eV Core-core repulsion = 11518.591854 eV Total energy + Delta-G solvation = -2168.586722 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.18378 -37.50494 -35.18750 -32.31749 -31.97439 -27.54517 -27.19296 -24.84217 -24.20054 -21.18228 -20.06332 -18.46464 -17.07697 -16.97278 -16.05692 -15.94843 -15.40022 -14.81971 -14.25868 -14.10367 -13.83129 -13.44984 -13.06783 -12.79453 -12.64173 -12.54323 -12.36847 -12.04616 -11.57233 -11.43895 -11.31000 -11.11872 -10.76358 -10.52027 -10.28670 -9.98849 -7.99233 -6.09633 1.40855 1.42209 1.51459 2.48170 3.16677 3.31847 3.95584 4.06528 4.18486 4.41386 4.50196 4.59943 4.65714 4.68231 4.75576 4.84618 4.91122 5.01671 5.06301 5.23552 5.38534 5.40324 5.42772 5.54302 5.61312 5.79937 5.84330 5.99009 6.25247 6.49349 6.74826 7.01618 7.54828 9.03757 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.032404 B = 0.014926 C = 0.010836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 863.889462 B = 1875.523949 C = 2583.396553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.397 6.397 3 C 0.102 3.898 4 H 0.035 0.965 5 C -0.129 4.129 6 C -0.108 4.108 7 C -0.108 4.108 8 C -0.104 4.104 9 C -0.085 4.085 10 C 0.050 3.950 11 H 0.006 0.994 12 C -0.512 4.512 13 H 0.048 0.952 14 C 0.008 3.992 15 N -0.913 5.913 16 Si 0.946 3.054 17 H -0.281 1.281 18 H -0.284 1.284 19 H -0.272 1.272 20 H 0.089 0.911 21 H 0.031 0.969 22 H 0.051 0.949 23 H 0.060 0.940 24 H 0.068 0.932 25 H 0.087 0.913 26 H 0.050 0.950 27 H 0.059 0.941 28 H 0.069 0.931 29 H 0.041 0.959 30 H 0.035 0.965 31 H 0.027 0.973 32 H 0.052 0.948 33 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.479 2.513 -7.924 9.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.317 6.317 3 C 0.044 3.956 4 H 0.053 0.947 5 C -0.167 4.167 6 C -0.146 4.146 7 C -0.145 4.145 8 C -0.142 4.142 9 C -0.123 4.123 10 C 0.032 3.968 11 H 0.024 0.976 12 C -0.551 4.551 13 H 0.066 0.934 14 C -0.190 4.190 15 N -0.554 5.554 16 Si 0.773 3.227 17 H -0.207 1.207 18 H -0.210 1.210 19 H -0.197 1.197 20 H 0.108 0.892 21 H 0.050 0.950 22 H 0.069 0.931 23 H 0.079 0.921 24 H 0.087 0.913 25 H 0.105 0.895 26 H 0.069 0.931 27 H 0.078 0.922 28 H 0.087 0.913 29 H 0.059 0.941 30 H 0.054 0.946 31 H 0.046 0.954 32 H 0.070 0.930 33 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -5.203 2.364 -7.840 9.702 hybrid contribution -0.069 -0.428 1.228 1.302 sum -5.272 1.936 -6.612 8.675 Atomic orbital electron populations 1.22851 0.81550 1.02847 0.99739 1.87985 1.19634 1.29102 1.94941 1.22726 0.95239 0.82920 0.94710 0.94726 1.21773 0.99953 0.98808 0.96122 1.21232 0.94560 0.97100 1.01700 1.20469 0.96456 1.00351 0.97212 1.20321 0.98353 0.98252 0.97245 1.21088 0.97955 0.96699 0.96600 1.18581 0.90513 0.95027 0.92715 0.97637 1.21538 0.96957 1.30480 1.06098 0.93412 1.25632 0.95277 0.97412 1.00671 1.70087 1.02340 1.45724 1.37218 0.85741 0.77829 0.79144 0.79985 1.20668 1.20982 1.19729 0.89215 0.95038 0.93079 0.92087 0.91324 0.89475 0.93137 0.92217 0.91259 0.94069 0.94642 0.95404 0.92984 0.93459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.86 10.79 113.37 1.22 2.08 16 2 O -0.40 -17.24 8.89 -148.98 -1.32 -18.57 16 3 C 0.10 4.31 2.26 31.31 0.07 4.38 16 4 H 0.03 1.44 7.72 -2.39 -0.02 1.43 16 5 C -0.13 -4.36 4.90 30.13 0.15 -4.21 16 6 C -0.11 -3.38 5.60 30.20 0.17 -3.21 16 7 C -0.11 -3.51 5.26 28.74 0.15 -3.36 16 8 C -0.10 -4.33 5.27 28.74 0.15 -4.18 16 9 C -0.09 -4.22 4.67 30.20 0.14 -4.08 16 10 C 0.05 2.55 1.54 -12.00 -0.02 2.53 16 11 H 0.01 0.32 6.64 -2.39 -0.02 0.30 16 12 C -0.51 -29.33 8.04 25.60 0.21 -29.13 16 13 H 0.05 2.77 7.01 -2.91 -0.02 2.75 16 14 C 0.01 0.43 5.02 84.66 0.43 0.86 16 15 N -0.91 -53.74 11.36 21.45 0.24 -53.50 16 16 Si 0.95 45.53 29.54 68.60 2.03 47.55 16 17 H -0.28 -13.33 7.11 99.48 0.71 -12.62 16 18 H -0.28 -13.33 7.11 99.48 0.71 -12.62 16 19 H -0.27 -12.80 7.11 99.48 0.71 -12.10 16 20 H 0.09 2.53 8.14 -2.39 -0.02 2.51 16 21 H 0.03 1.01 8.07 -2.38 -0.02 0.99 16 22 H 0.05 1.37 8.14 -2.39 -0.02 1.36 16 23 H 0.06 2.13 6.63 -2.38 -0.02 2.12 16 24 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 25 H 0.09 2.12 8.14 -2.39 -0.02 2.10 16 26 H 0.05 1.75 6.99 -2.39 -0.02 1.74 16 27 H 0.06 1.86 7.47 -2.39 -0.02 1.84 16 28 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 29 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 30 H 0.03 1.60 7.47 -2.39 -0.02 1.58 16 31 H 0.03 1.33 6.98 -2.39 -0.02 1.31 16 32 H 0.05 2.97 5.65 -2.39 -0.01 2.96 16 33 H 0.26 14.45 8.31 -92.71 -0.77 13.68 16 Total: -1.00 -62.73 252.24 4.67 -58.06 By element: Atomic # 1 Polarization: 3.70 SS G_CDS: 1.06 Total: 4.76 kcal Atomic # 6 Polarization: -40.98 SS G_CDS: 2.67 Total: -38.31 kcal Atomic # 7 Polarization: -53.74 SS G_CDS: 0.24 Total: -53.50 kcal Atomic # 8 Polarization: -17.24 SS G_CDS: -1.32 Total: -18.57 kcal Atomic # 14 Polarization: 45.53 SS G_CDS: 2.03 Total: 47.55 kcal Total: -62.73 4.67 -58.06 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259821632.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.085 kcal (2) G-P(sol) polarization free energy of solvation -62.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.059 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds