Wall clock time and date at job start Mon Mar 30 2020 02:31:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42896 * 113.99838 * 2 1 4 4 H 1.09001 * 108.87289 * 31.39729 * 3 2 1 5 5 C 1.54240 * 108.89529 * 272.88703 * 3 2 1 6 6 C 1.50469 * 108.51843 * 159.25514 * 5 3 2 7 7 C 1.54069 * 112.49972 * 94.15526 * 6 5 3 8 8 C 1.54067 * 112.81075 * 318.28419 * 7 6 5 9 9 C 1.50551 * 112.41673 * 318.27341 * 8 7 6 10 10 C 1.45544 * 108.89418 * 149.99931 * 3 2 1 11 11 H 1.09002 * 108.89359 * 62.02894 * 10 3 2 12 12 C 1.50706 * 108.89295 * 303.44307 * 10 3 2 13 13 H 1.07995 * 120.00167 * 358.32587 * 12 10 3 14 14 C 1.37879 * 119.99394 * 178.60285 * 12 10 3 15 15 N 1.31514 * 120.00338 * 0.02562 * 14 12 10 16 16 Si 1.86800 * 119.99424 * 180.02562 * 14 12 10 17 17 H 1.48492 * 109.47487 * 359.97438 * 16 14 12 18 18 H 1.48500 * 109.47233 * 120.00158 * 16 14 12 19 19 H 1.48508 * 109.46883 * 239.99963 * 16 14 12 20 20 H 1.09004 * 109.47309 * 179.97438 * 1 2 3 21 21 H 1.09001 * 109.47572 * 300.00087 * 1 2 3 22 22 H 1.08999 * 109.47176 * 60.00114 * 1 2 3 23 23 H 1.09002 * 109.62850 * 278.96065 * 5 3 2 24 24 H 1.08994 * 109.62558 * 39.54402 * 5 3 2 25 25 H 1.09002 * 108.87831 * 214.93231 * 6 5 3 26 26 H 1.09004 * 108.88272 * 333.37251 * 6 5 3 27 27 H 1.08995 * 108.81179 * 79.14143 * 7 6 5 28 28 H 1.08997 * 108.81274 * 197.42374 * 7 6 5 29 29 H 1.09000 * 108.88163 * 79.06057 * 8 7 6 30 30 H 1.09006 * 108.87262 * 197.50794 * 8 7 6 31 31 H 1.09002 * 109.72141 * 334.53193 * 9 8 7 32 32 H 1.08997 * 109.58102 * 213.92594 * 9 8 7 33 33 H 0.96996 * 119.99730 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3493 1.9856 0.5373 5 6 2.1462 1.7916 -1.4574 6 6 2.2605 3.2920 -1.4520 7 6 3.7246 3.7717 -1.4570 8 6 4.6268 2.9466 -0.5195 9 6 3.9593 2.6372 0.7940 10 6 3.2913 1.2510 0.6885 11 1 3.9559 0.5793 0.1450 12 6 3.0763 0.7059 2.0770 13 1 2.0799 0.4571 2.4112 14 6 4.1511 0.5301 2.9226 15 7 5.3638 0.8386 2.5176 16 14 3.8847 -0.1463 4.6433 17 1 2.4388 -0.4115 4.8526 18 1 4.6483 -1.4100 4.8022 19 1 4.3554 0.8456 5.6434 20 1 -0.3634 -1.0277 -0.0005 21 1 -0.3634 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 3.0399 1.3580 -1.9062 24 1 1.2657 1.4935 -2.0265 25 1 1.7569 3.6873 -2.3342 26 1 1.7652 3.6803 -0.5620 27 1 4.1143 3.7005 -2.4724 28 1 3.7536 4.8154 -1.1441 29 1 4.8860 2.0101 -1.0135 30 1 5.5419 3.5069 -0.3275 31 1 3.2033 3.3925 1.0093 32 1 4.7051 2.6248 1.5888 33 1 6.1198 0.7152 3.1127 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259821636.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:43 Heat of formation + Delta-G solvation = -82.909539 kcal Electronic energy + Delta-G solvation = -13637.907108 eV Core-core repulsion = 11469.243822 eV Total energy + Delta-G solvation = -2168.663285 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.38185 -37.36261 -35.18009 -32.27645 -32.08775 -27.56373 -27.41502 -24.63757 -24.35593 -21.24163 -20.02627 -18.50017 -17.52219 -16.78029 -16.07821 -15.86526 -15.47306 -14.76910 -14.48762 -14.17534 -13.76063 -13.21754 -13.05436 -12.76583 -12.66221 -12.49259 -12.38618 -12.13866 -11.73895 -11.55574 -11.22784 -11.04184 -11.01191 -10.59413 -10.29566 -10.08377 -8.02500 -6.14572 1.38797 1.40703 1.51924 2.45713 3.09961 3.31382 3.93893 4.06735 4.23499 4.38278 4.47111 4.57205 4.61614 4.66997 4.70833 4.85241 4.93255 4.99395 5.04904 5.17273 5.25203 5.35227 5.51934 5.54133 5.57656 5.68715 5.74088 5.95804 6.18565 6.45572 6.71865 6.95800 7.50725 9.00920 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.032583 B = 0.014418 C = 0.010612 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 859.129787 B = 1941.587657 C = 2637.942383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.409 6.409 3 C 0.116 3.884 4 H 0.039 0.961 5 C -0.132 4.132 6 C -0.110 4.110 7 C -0.109 4.109 8 C -0.108 4.108 9 C -0.095 4.095 10 C 0.042 3.958 11 H -0.011 1.011 12 C -0.513 4.513 13 H 0.044 0.956 14 C 0.009 3.991 15 N -0.915 5.915 16 Si 0.949 3.051 17 H -0.271 1.271 18 H -0.284 1.284 19 H -0.278 1.278 20 H 0.090 0.910 21 H 0.032 0.968 22 H 0.053 0.947 23 H 0.054 0.946 24 H 0.073 0.927 25 H 0.083 0.917 26 H 0.054 0.946 27 H 0.067 0.933 28 H 0.067 0.933 29 H 0.034 0.966 30 H 0.045 0.955 31 H 0.038 0.962 32 H 0.064 0.936 33 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.733 4.579 -6.695 10.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.328 6.328 3 C 0.059 3.941 4 H 0.057 0.943 5 C -0.170 4.170 6 C -0.147 4.147 7 C -0.146 4.146 8 C -0.146 4.146 9 C -0.134 4.134 10 C 0.023 3.977 11 H 0.007 0.993 12 C -0.551 4.551 13 H 0.062 0.938 14 C -0.189 4.189 15 N -0.556 5.556 16 Si 0.775 3.225 17 H -0.196 1.196 18 H -0.210 1.210 19 H -0.204 1.204 20 H 0.109 0.891 21 H 0.050 0.950 22 H 0.071 0.929 23 H 0.073 0.927 24 H 0.092 0.908 25 H 0.101 0.899 26 H 0.072 0.928 27 H 0.086 0.914 28 H 0.086 0.914 29 H 0.053 0.947 30 H 0.064 0.936 31 H 0.056 0.944 32 H 0.082 0.918 33 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -6.451 4.414 -6.632 10.251 hybrid contribution 0.090 -0.481 1.158 1.257 sum -6.361 3.933 -5.474 9.268 Atomic orbital electron populations 1.22839 0.81264 1.02877 0.99878 1.87980 1.20076 1.29708 1.95058 1.21106 0.95355 0.82957 0.94680 0.94270 1.21813 1.01799 0.97033 0.96373 1.21219 0.96905 0.94348 1.02277 1.21896 0.94511 0.99142 0.99067 1.21288 0.98240 0.98852 0.96211 1.21109 0.99350 0.95489 0.97404 1.17684 0.92037 0.93949 0.94020 0.99319 1.21518 0.92984 1.41278 0.99358 0.93808 1.25670 0.95134 0.96243 1.01854 1.70041 0.98928 1.49534 1.37088 0.85650 0.78064 0.78061 0.80732 1.19593 1.20969 1.20367 0.89148 0.94983 0.92886 0.92750 0.90836 0.89864 0.92761 0.91379 0.91418 0.94694 0.93591 0.94357 0.91795 0.93280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.91 10.74 113.37 1.22 2.13 16 2 O -0.41 -18.24 9.49 -148.98 -1.41 -19.66 16 3 C 0.12 5.04 1.47 28.74 0.04 5.09 16 4 H 0.04 1.68 7.09 -2.39 -0.02 1.67 16 5 C -0.13 -4.61 5.21 30.20 0.16 -4.45 16 6 C -0.11 -3.25 5.31 30.14 0.16 -3.09 16 7 C -0.11 -3.30 5.85 31.32 0.18 -3.11 16 8 C -0.11 -4.32 5.32 30.16 0.16 -4.16 16 9 C -0.10 -4.55 4.77 30.22 0.14 -4.41 16 10 C 0.04 2.16 1.36 -13.39 -0.02 2.14 16 11 H -0.01 -0.67 7.46 -2.39 -0.02 -0.69 16 12 C -0.51 -29.60 8.01 25.60 0.21 -29.39 16 13 H 0.04 2.55 7.51 -2.91 -0.02 2.52 16 14 C 0.01 0.49 5.17 84.66 0.44 0.93 16 15 N -0.92 -54.35 11.26 21.45 0.24 -54.10 16 16 Si 0.95 45.44 29.54 68.60 2.03 47.47 16 17 H -0.27 -12.73 7.11 99.48 0.71 -12.02 16 18 H -0.28 -13.42 7.11 99.48 0.71 -12.72 16 19 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 20 H 0.09 2.57 8.14 -2.38 -0.02 2.55 16 21 H 0.03 1.04 8.07 -2.39 -0.02 1.02 16 22 H 0.05 1.44 7.50 -2.39 -0.02 1.42 16 23 H 0.05 2.03 6.98 -2.39 -0.02 2.02 16 24 H 0.07 2.22 7.41 -2.39 -0.02 2.20 16 25 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 26 H 0.05 1.67 6.62 -2.39 -0.02 1.65 16 27 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 28 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 29 H 0.03 1.50 6.63 -2.39 -0.02 1.49 16 30 H 0.05 1.76 8.14 -2.38 -0.02 1.74 16 31 H 0.04 1.70 6.97 -2.39 -0.02 1.69 16 32 H 0.06 3.52 5.68 -2.39 -0.01 3.51 16 33 H 0.26 14.55 8.31 -92.71 -0.77 13.78 16 Total: -1.00 -64.06 251.76 4.61 -59.45 By element: Atomic # 1 Polarization: 4.10 SS G_CDS: 1.06 Total: 5.17 kcal Atomic # 6 Polarization: -41.02 SS G_CDS: 2.69 Total: -38.33 kcal Atomic # 7 Polarization: -54.35 SS G_CDS: 0.24 Total: -54.10 kcal Atomic # 8 Polarization: -18.24 SS G_CDS: -1.41 Total: -19.66 kcal Atomic # 14 Polarization: 45.44 SS G_CDS: 2.03 Total: 47.47 kcal Total: -64.06 4.61 -59.45 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259821636.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.463 kcal (2) G-P(sol) polarization free energy of solvation -64.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.447 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds