Wall clock time and date at job start Mon Mar 30 2020 02:31:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42904 * 114.00236 * 2 1 4 4 H 1.08996 * 109.77887 * 329.51217 * 3 2 1 5 5 C 1.50475 * 109.62857 * 89.99351 * 3 2 1 6 6 C 1.54066 * 112.41901 * 213.81148 * 5 3 2 7 7 C 1.54072 * 112.81565 * 318.33511 * 6 5 3 8 8 C 1.50467 * 112.49682 * 318.28221 * 7 6 5 9 9 C 1.54238 * 108.51643 * 94.15503 * 8 7 6 10 10 C 1.45541 * 112.40954 * 280.00617 * 9 8 7 11 11 H 1.08996 * 108.89176 * 301.28105 * 10 9 8 12 12 C 1.50697 * 108.89447 * 182.69157 * 10 9 8 13 13 H 1.08003 * 119.99849 * 239.99665 * 12 10 9 14 14 C 1.37872 * 120.00242 * 60.00374 * 12 10 9 15 15 N 1.31518 * 120.00369 * 359.97438 * 14 12 10 16 16 Si 1.86808 * 120.00345 * 179.97438 * 14 12 10 17 17 H 1.48502 * 109.46994 * 89.99405 * 16 14 12 18 18 H 1.48498 * 109.47108 * 209.99796 * 16 14 12 19 19 H 1.48502 * 109.46699 * 329.99979 * 16 14 12 20 20 H 1.09003 * 109.47470 * 300.00492 * 1 2 3 21 21 H 1.09006 * 109.47038 * 60.00403 * 1 2 3 22 22 H 1.09002 * 109.47161 * 179.97438 * 1 2 3 23 23 H 1.09002 * 108.87734 * 93.08373 * 5 3 2 24 24 H 1.08999 * 108.87803 * 334.54150 * 5 3 2 25 25 H 1.09005 * 108.81399 * 79.19294 * 6 5 3 26 26 H 1.08997 * 108.81589 * 197.47263 * 6 5 3 27 27 H 1.09000 * 108.87603 * 79.06515 * 7 6 5 28 28 H 1.08999 * 108.87159 * 197.60609 * 7 6 5 29 29 H 1.09003 * 109.62953 * 213.86812 * 8 7 6 30 30 H 1.08996 * 109.63339 * 334.25091 * 8 7 6 31 31 H 1.09000 * 108.89366 * 40.76676 * 9 8 7 32 32 H 1.09002 * 108.89226 * 159.25270 * 9 8 7 33 33 H 0.96994 * 120.00810 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3529 2.0019 -0.5204 5 6 2.2157 1.7673 1.4173 6 6 2.0254 3.2882 1.5731 7 6 2.6587 4.0908 0.4205 8 6 4.0079 3.5578 0.0211 9 6 3.8183 2.5726 -1.1504 10 6 3.3803 1.2582 -0.7046 11 1 4.1193 0.8562 -0.0116 12 6 3.2846 0.3446 -1.8993 13 1 2.3398 -0.1112 -2.1561 14 6 4.4031 0.0906 -2.6643 15 7 5.5536 0.6460 -2.3518 16 14 4.2847 -1.0425 -4.1448 17 1 3.9451 -0.2463 -5.3515 18 1 5.5876 -1.7241 -4.3519 19 1 3.2270 -2.0576 -3.9077 20 1 -0.3634 0.5139 0.8899 21 1 -0.3633 0.5138 -0.8901 22 1 -0.3633 -1.0277 -0.0005 23 1 3.2260 1.5043 1.7310 24 1 1.5021 1.2546 2.0622 25 1 0.9581 3.5071 1.6090 26 1 2.4787 3.6048 2.5125 27 1 1.9944 4.0519 -0.4429 28 1 2.7696 5.1290 0.7331 29 1 4.6487 4.3817 -0.2932 30 1 4.4630 3.0423 0.8668 31 1 3.0748 2.9787 -1.8362 32 1 4.7650 2.4682 -1.6805 33 1 6.3406 0.4670 -2.8897 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259821638.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:45 Heat of formation + Delta-G solvation = -65.156260 kcal Electronic energy + Delta-G solvation = -13638.650740 eV Core-core repulsion = 11470.757295 eV Total energy + Delta-G solvation = -2167.893445 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -38.65230 -35.79753 -33.35041 -30.64873 -30.22951 -26.02052 -25.53517 -23.05279 -22.58892 -19.34848 -18.72212 -16.39574 -15.83741 -14.87311 -14.29141 -14.02556 -13.87662 -13.44616 -13.14876 -12.55097 -12.06233 -11.49881 -11.40148 -11.25594 -10.89750 -10.80894 -10.47570 -10.36249 -10.05733 -9.87899 -9.57555 -9.46340 -9.07121 -8.70447 -8.41455 -8.12167 -5.84742 -3.89090 3.38307 3.44723 3.50146 4.55087 4.69762 5.35985 5.42661 5.47072 5.52878 5.80900 5.89211 5.97751 6.07167 6.10396 6.16596 6.24480 6.35841 6.42507 6.48362 6.65757 6.79473 6.89362 6.96322 7.04810 7.26896 7.68851 7.88366 7.97954 8.17851 8.46073 8.63571 9.16079 9.73873 11.19864 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.034605 B = 0.013934 C = 0.010630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 808.936558 B = 2008.919212 C = 2633.461519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.365 6.365 3 C 0.099 3.901 4 H 0.044 0.956 5 C -0.140 4.140 6 C -0.109 4.109 7 C -0.116 4.116 8 C -0.123 4.123 9 C -0.108 4.108 10 C 0.050 3.950 11 H 0.029 0.971 12 C -0.490 4.490 13 H 0.060 0.940 14 C 0.053 3.947 15 N -0.899 5.899 16 Si 0.890 3.110 17 H -0.284 1.284 18 H -0.289 1.289 19 H -0.275 1.275 20 H 0.025 0.975 21 H 0.032 0.968 22 H 0.072 0.928 23 H 0.066 0.934 24 H 0.051 0.949 25 H 0.047 0.953 26 H 0.052 0.948 27 H 0.057 0.943 28 H 0.044 0.956 29 H 0.045 0.955 30 H 0.056 0.944 31 H 0.031 0.969 32 H 0.103 0.897 33 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.441 4.276 5.090 9.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.283 6.283 3 C 0.042 3.958 4 H 0.062 0.938 5 C -0.178 4.178 6 C -0.147 4.147 7 C -0.154 4.154 8 C -0.160 4.160 9 C -0.146 4.146 10 C 0.032 3.968 11 H 0.047 0.953 12 C -0.528 4.528 13 H 0.079 0.921 14 C -0.146 4.146 15 N -0.540 5.540 16 Si 0.718 3.282 17 H -0.210 1.210 18 H -0.215 1.215 19 H -0.200 1.200 20 H 0.044 0.956 21 H 0.051 0.949 22 H 0.091 0.909 23 H 0.084 0.916 24 H 0.070 0.930 25 H 0.066 0.934 26 H 0.071 0.929 27 H 0.076 0.924 28 H 0.063 0.937 29 H 0.064 0.936 30 H 0.074 0.926 31 H 0.050 0.950 32 H 0.121 0.879 33 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -6.145 4.104 5.027 8.937 hybrid contribution -0.269 -0.364 -0.736 0.864 sum -6.414 3.740 4.291 8.575 Atomic orbital electron populations 1.22624 0.84101 1.01210 0.98615 1.88068 1.16754 1.28827 1.94644 1.22014 0.97669 0.82685 0.93467 0.93774 1.21967 1.02273 0.94723 0.98859 1.21826 0.99407 0.95201 0.98246 1.21391 0.98172 0.97749 0.98052 1.21459 0.95185 0.99126 1.00268 1.20614 1.04240 0.94193 0.95525 1.17687 0.89148 0.94250 0.95719 0.95289 1.21222 0.95518 1.26127 1.09975 0.92130 1.24957 0.95503 0.96343 0.97796 1.69818 0.99784 1.44558 1.39830 0.86622 0.77213 0.81166 0.83160 1.21002 1.21455 1.19988 0.95622 0.94924 0.90917 0.91572 0.93024 0.93372 0.92946 0.92438 0.93674 0.93626 0.92563 0.95028 0.87861 0.93244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.55 10.75 101.05 1.09 1.63 16 2 O -0.36 -8.15 8.83 -35.23 -0.31 -8.46 16 3 C 0.10 2.14 1.93 -27.40 -0.05 2.09 16 4 H 0.04 0.93 6.64 -51.93 -0.34 0.59 16 5 C -0.14 -2.60 5.05 -27.44 -0.14 -2.74 16 6 C -0.11 -1.72 5.85 -25.62 -0.15 -1.87 16 7 C -0.12 -1.94 5.31 -27.44 -0.15 -2.08 16 8 C -0.12 -2.38 5.60 -27.35 -0.15 -2.53 16 9 C -0.11 -2.55 4.35 -29.60 -0.13 -2.68 16 10 C 0.05 1.27 1.54 -94.70 -0.15 1.13 16 11 H 0.03 0.81 7.47 -51.93 -0.39 0.43 16 12 C -0.49 -13.83 7.98 -34.44 -0.28 -14.10 16 13 H 0.06 1.74 7.02 -52.48 -0.37 1.37 16 14 C 0.05 1.50 5.27 -17.82 -0.09 1.41 16 15 N -0.90 -26.11 11.21 55.43 0.62 -25.49 16 16 Si 0.89 22.02 29.54 -169.99 -5.02 17.00 16 17 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 18 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 19 H -0.27 -6.79 7.11 56.52 0.40 -6.39 16 20 H 0.03 0.38 7.87 -51.93 -0.41 -0.03 16 21 H 0.03 0.54 8.09 -51.93 -0.42 0.12 16 22 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 23 H 0.07 1.30 6.64 -51.93 -0.34 0.95 16 24 H 0.05 0.89 7.63 -51.93 -0.40 0.50 16 25 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 26 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 27 H 0.06 0.99 6.63 -51.93 -0.34 0.65 16 28 H 0.04 0.66 8.14 -51.93 -0.42 0.23 16 29 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.06 1.11 6.99 -51.93 -0.36 0.74 16 31 H 0.03 0.74 7.47 -51.93 -0.39 0.35 16 32 H 0.10 2.77 5.69 -51.93 -0.30 2.47 16 33 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 LS Contribution 251.68 15.07 3.79 3.79 Total: -1.00 -29.21 251.68 -6.43 -35.64 By element: Atomic # 1 Polarization: 2.58 SS G_CDS: -5.31 Total: -2.73 kcal Atomic # 6 Polarization: -19.55 SS G_CDS: -0.20 Total: -19.75 kcal Atomic # 7 Polarization: -26.11 SS G_CDS: 0.62 Total: -25.49 kcal Atomic # 8 Polarization: -8.15 SS G_CDS: -0.31 Total: -8.46 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 3.79 Total: 3.79 kcal Total: -29.21 -6.43 -35.64 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259821638.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.516 kcal (2) G-P(sol) polarization free energy of solvation -29.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.640 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds