Wall clock time and date at job start Mon Mar 30 2020 02:31:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42901 * 114.00134 * 2 1 4 4 C 1.52996 * 109.47091 * 179.97438 * 3 2 1 5 5 H 1.09003 * 109.47000 * 305.00424 * 4 3 2 6 6 C 1.50689 * 109.47238 * 185.00206 * 4 3 2 7 7 H 1.08001 * 120.00291 * 239.99877 * 6 4 3 8 8 C 1.37883 * 120.00126 * 60.00156 * 6 4 3 9 9 N 1.31513 * 119.99829 * 359.97438 * 8 6 4 10 10 Si 1.86805 * 120.00128 * 180.02562 * 8 6 4 11 11 H 1.48500 * 109.47166 * 89.99539 * 10 8 6 12 12 H 1.48497 * 109.46870 * 209.99872 * 10 8 6 13 13 H 1.48498 * 109.47083 * 329.99925 * 10 8 6 14 14 C 1.52998 * 109.47305 * 65.00095 * 4 3 2 15 15 C 1.54272 * 110.03253 * 297.16879 * 14 4 3 16 16 C 1.54884 * 104.19506 * 217.10246 * 15 14 4 17 17 C 1.54888 * 102.75183 * 37.93998 * 16 15 14 18 18 C 1.53876 * 110.03628 * 180.02562 * 14 4 3 19 19 H 1.09001 * 109.47103 * 300.00246 * 1 2 3 20 20 H 1.09004 * 109.47054 * 59.99750 * 1 2 3 21 21 H 1.09000 * 109.47187 * 179.97438 * 1 2 3 22 22 H 1.08994 * 109.47036 * 300.00109 * 3 2 1 23 23 H 1.09002 * 109.46796 * 60.00253 * 3 2 1 24 24 H 0.97001 * 119.99630 * 179.97438 * 9 8 6 25 25 H 1.09002 * 110.01668 * 58.60656 * 14 4 3 26 26 H 1.09000 * 110.48722 * 335.78033 * 15 14 4 27 27 H 1.08996 * 110.48439 * 98.42438 * 15 14 4 28 28 H 1.08996 * 110.75979 * 279.62647 * 16 15 14 29 29 H 1.08998 * 110.91436 * 156.32905 * 16 15 14 30 30 H 1.08997 * 110.49269 * 203.37427 * 17 16 15 31 31 H 1.09005 * 110.59588 * 80.78721 * 17 16 15 32 32 H 1.09004 * 110.03045 * 238.57238 * 18 14 4 33 33 H 1.09002 * 110.03006 * 359.97438 * 18 14 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1846 0.0006 5 1 3.8508 0.5684 0.8427 6 6 4.1480 2.5558 0.1245 7 1 4.8007 2.9278 -0.6514 8 6 3.8752 3.3356 1.2285 9 7 3.0801 2.8828 2.1731 10 14 4.6339 5.0357 1.3817 11 1 3.7320 6.0382 0.7598 12 1 4.8252 5.3648 2.8171 13 1 5.9478 5.0556 0.6900 14 6 3.9963 0.5364 -1.3064 15 6 3.4337 -0.8961 -1.4129 16 6 4.5749 -1.7038 -2.0793 17 6 5.8453 -1.0972 -1.4335 18 6 5.5297 0.4079 -1.3192 19 1 -0.3633 0.5139 0.8900 20 1 -0.3633 0.5139 -0.8900 21 1 -0.3633 -1.0277 -0.0005 22 1 1.6887 1.8463 -0.8899 23 1 1.6887 1.8463 0.8900 24 1 2.8885 3.4312 2.9499 25 1 3.6641 1.1329 -2.1561 26 1 3.2128 -1.2939 -0.4224 27 1 2.5411 -0.9098 -2.0383 28 1 4.5787 -1.5492 -3.1582 29 1 4.4903 -2.7645 -1.8430 30 1 6.7127 -1.2578 -2.0737 31 1 6.0162 -1.5270 -0.4464 32 1 5.9419 0.9416 -2.1755 33 1 5.9455 0.8078 -0.3944 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259863646.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:37 Heat of formation + Delta-G solvation = -74.665435 kcal Electronic energy + Delta-G solvation = -13396.963639 eV Core-core repulsion = 11228.657845 eV Total energy + Delta-G solvation = -2168.305794 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -37.99319 -36.21992 -33.36139 -30.50224 -27.92306 -26.56462 -25.70071 -24.02457 -20.73875 -19.90924 -18.43529 -16.29739 -15.28623 -15.13183 -14.74027 -14.28350 -13.87290 -13.67045 -12.51774 -12.46917 -11.86443 -11.69563 -11.14895 -11.00366 -10.69127 -10.48212 -10.42841 -10.33175 -10.16445 -9.88576 -9.69847 -9.38209 -8.95859 -8.88114 -8.61103 -8.15983 -6.01707 -4.08699 3.28720 3.36029 3.39350 4.40685 4.93631 5.35671 5.44111 5.51439 5.56569 5.98836 6.05831 6.20803 6.22668 6.27190 6.28071 6.45420 6.48183 6.62209 6.72048 6.74747 6.92716 7.00701 7.06277 7.20924 7.31306 7.45745 7.66204 7.90222 8.03443 8.26766 8.56886 8.96948 9.56103 11.03113 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.028593 B = 0.013841 C = 0.009870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 979.034644 B = 2022.555323 C = 2836.195209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.397 6.397 3 C 0.061 3.939 4 C 0.062 3.938 5 H 0.034 0.966 6 C -0.509 4.509 7 H 0.061 0.939 8 C 0.059 3.941 9 N -0.890 5.890 10 Si 0.891 3.109 11 H -0.281 1.281 12 H -0.287 1.287 13 H -0.273 1.273 14 C -0.078 4.078 15 C -0.104 4.104 16 C -0.129 4.129 17 C -0.124 4.124 18 C -0.112 4.112 19 H 0.030 0.970 20 H 0.025 0.975 21 H 0.066 0.934 22 H 0.015 0.985 23 H 0.081 0.919 24 H 0.261 0.739 25 H 0.049 0.951 26 H 0.072 0.928 27 H 0.051 0.949 28 H 0.053 0.947 29 H 0.052 0.948 30 H 0.049 0.951 31 H 0.059 0.941 32 H 0.044 0.956 33 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.456 -5.059 -5.077 7.182 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.316 6.316 3 C -0.015 4.015 4 C 0.043 3.957 5 H 0.052 0.948 6 C -0.547 4.547 7 H 0.079 0.921 8 C -0.142 4.142 9 N -0.529 5.529 10 Si 0.719 3.281 11 H -0.208 1.208 12 H -0.212 1.212 13 H -0.198 1.198 14 C -0.096 4.096 15 C -0.141 4.141 16 C -0.167 4.167 17 C -0.162 4.162 18 C -0.150 4.150 19 H 0.049 0.951 20 H 0.043 0.957 21 H 0.085 0.915 22 H 0.033 0.967 23 H 0.099 0.901 24 H 0.071 0.929 25 H 0.067 0.933 26 H 0.091 0.909 27 H 0.069 0.931 28 H 0.072 0.928 29 H 0.070 0.930 30 H 0.068 0.932 31 H 0.077 0.923 32 H 0.063 0.937 33 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -0.407 -5.154 -4.898 7.122 hybrid contribution 0.040 1.320 0.122 1.326 sum -0.368 -3.834 -4.777 6.136 Atomic orbital electron populations 1.22501 0.84407 1.00500 0.98835 1.87913 1.16910 1.31488 1.95294 1.23088 0.96735 0.81749 0.99943 1.18792 0.89134 0.95533 0.92203 0.94752 1.21181 1.28068 1.00322 1.05102 0.92116 1.25049 0.95166 0.98261 0.95727 1.69885 1.36281 1.37152 1.09540 0.86605 0.79760 0.84551 0.77205 1.20757 1.21240 1.19804 1.21757 0.93635 0.94749 0.99502 1.22377 0.95680 0.95540 1.00515 1.22562 0.96548 0.98510 0.99063 1.22361 0.96759 0.97282 0.99769 1.22127 0.97113 0.94096 1.01619 0.95116 0.95670 0.91497 0.96706 0.90115 0.92918 0.93259 0.90948 0.93066 0.92775 0.92967 0.93227 0.92266 0.93674 0.90684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.62 11.01 101.05 1.11 1.74 16 2 O -0.40 -8.78 7.65 -35.23 -0.27 -9.05 16 3 C 0.06 1.49 5.13 37.16 0.19 1.68 16 4 C 0.06 1.56 1.46 -91.78 -0.13 1.43 16 5 H 0.03 0.96 8.12 -51.93 -0.42 0.54 16 6 C -0.51 -13.71 7.57 -34.44 -0.26 -13.97 16 7 H 0.06 1.61 7.45 -52.49 -0.39 1.22 16 8 C 0.06 1.62 5.29 -17.82 -0.09 1.52 16 9 N -0.89 -25.28 11.29 55.43 0.63 -24.66 16 10 Si 0.89 21.06 29.54 -169.99 -5.02 16.04 16 11 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 12 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 13 H -0.27 -6.38 7.11 56.52 0.40 -5.97 16 14 C -0.08 -1.68 2.47 -89.50 -0.22 -1.90 16 15 C -0.10 -2.01 4.69 -25.07 -0.12 -2.12 16 16 C -0.13 -2.12 6.91 -24.74 -0.17 -2.29 16 17 C -0.12 -2.10 6.83 -25.10 -0.17 -2.27 16 18 C -0.11 -2.21 5.82 -25.64 -0.15 -2.36 16 19 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 20 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 21 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 22 H 0.01 0.36 8.14 -51.93 -0.42 -0.07 16 23 H 0.08 2.20 5.95 -51.93 -0.31 1.89 16 24 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 25 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 26 H 0.07 1.52 6.82 -51.93 -0.35 1.16 16 27 H 0.05 0.97 7.93 -51.93 -0.41 0.56 16 28 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 29 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 30 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 31 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 32 H 0.04 0.84 8.14 -51.93 -0.42 0.41 16 33 H 0.07 1.62 7.10 -51.93 -0.37 1.26 16 LS Contribution 260.07 15.07 3.92 3.92 Total: -1.00 -27.75 260.07 -6.38 -34.12 By element: Atomic # 1 Polarization: 3.80 SS G_CDS: -5.62 Total: -1.82 kcal Atomic # 6 Polarization: -18.54 SS G_CDS: -0.02 Total: -18.55 kcal Atomic # 7 Polarization: -25.28 SS G_CDS: 0.63 Total: -24.66 kcal Atomic # 8 Polarization: -8.78 SS G_CDS: -0.27 Total: -9.05 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.04 kcal Total LS contribution 3.92 Total: 3.92 kcal Total: -27.75 -6.38 -34.12 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259863646.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.541 kcal (2) G-P(sol) polarization free energy of solvation -27.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.124 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds