Wall clock time and date at job start Mon Mar 30 2020 02:31:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42901 * 114.00134 * 2 1 4 4 C 1.52996 * 109.47091 * 179.97438 * 3 2 1 5 5 H 1.09003 * 109.47000 * 305.00424 * 4 3 2 6 6 C 1.50689 * 109.47238 * 185.00206 * 4 3 2 7 7 H 1.08001 * 120.00291 * 239.99877 * 6 4 3 8 8 C 1.37883 * 120.00126 * 60.00156 * 6 4 3 9 9 N 1.31513 * 119.99829 * 359.97438 * 8 6 4 10 10 Si 1.86805 * 120.00128 * 180.02562 * 8 6 4 11 11 H 1.48500 * 109.47166 * 89.99539 * 10 8 6 12 12 H 1.48497 * 109.46870 * 209.99872 * 10 8 6 13 13 H 1.48498 * 109.47083 * 329.99925 * 10 8 6 14 14 C 1.52998 * 109.47305 * 65.00095 * 4 3 2 15 15 C 1.54272 * 110.03253 * 297.16879 * 14 4 3 16 16 C 1.54884 * 104.19506 * 217.10246 * 15 14 4 17 17 C 1.54888 * 102.75183 * 37.93998 * 16 15 14 18 18 C 1.53876 * 110.03628 * 180.02562 * 14 4 3 19 19 H 1.09001 * 109.47103 * 300.00246 * 1 2 3 20 20 H 1.09004 * 109.47054 * 59.99750 * 1 2 3 21 21 H 1.09000 * 109.47187 * 179.97438 * 1 2 3 22 22 H 1.08994 * 109.47036 * 300.00109 * 3 2 1 23 23 H 1.09002 * 109.46796 * 60.00253 * 3 2 1 24 24 H 0.97001 * 119.99630 * 179.97438 * 9 8 6 25 25 H 1.09002 * 110.01668 * 58.60656 * 14 4 3 26 26 H 1.09000 * 110.48722 * 335.78033 * 15 14 4 27 27 H 1.08996 * 110.48439 * 98.42438 * 15 14 4 28 28 H 1.08996 * 110.75979 * 279.62647 * 16 15 14 29 29 H 1.08998 * 110.91436 * 156.32905 * 16 15 14 30 30 H 1.08997 * 110.49269 * 203.37427 * 17 16 15 31 31 H 1.09005 * 110.59588 * 80.78721 * 17 16 15 32 32 H 1.09004 * 110.03045 * 238.57238 * 18 14 4 33 33 H 1.09002 * 110.03006 * 359.97438 * 18 14 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1846 0.0006 5 1 3.8508 0.5684 0.8427 6 6 4.1480 2.5558 0.1245 7 1 4.8007 2.9278 -0.6514 8 6 3.8752 3.3356 1.2285 9 7 3.0801 2.8828 2.1731 10 14 4.6339 5.0357 1.3817 11 1 3.7320 6.0382 0.7598 12 1 4.8252 5.3648 2.8171 13 1 5.9478 5.0556 0.6900 14 6 3.9963 0.5364 -1.3064 15 6 3.4337 -0.8961 -1.4129 16 6 4.5749 -1.7038 -2.0793 17 6 5.8453 -1.0972 -1.4335 18 6 5.5297 0.4079 -1.3192 19 1 -0.3633 0.5139 0.8900 20 1 -0.3633 0.5139 -0.8900 21 1 -0.3633 -1.0277 -0.0005 22 1 1.6887 1.8463 -0.8899 23 1 1.6887 1.8463 0.8900 24 1 2.8885 3.4312 2.9499 25 1 3.6641 1.1329 -2.1561 26 1 3.2128 -1.2939 -0.4224 27 1 2.5411 -0.9098 -2.0383 28 1 4.5787 -1.5492 -3.1582 29 1 4.4903 -2.7645 -1.8430 30 1 6.7127 -1.2578 -2.0737 31 1 6.0162 -1.5270 -0.4464 32 1 5.9419 0.9416 -2.1755 33 1 5.9455 0.8078 -0.3944 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259863646.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:37 Heat of formation + Delta-G solvation = -90.058172 kcal Electronic energy + Delta-G solvation = -13397.631118 eV Core-core repulsion = 11228.657845 eV Total energy + Delta-G solvation = -2168.973273 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.68883 -37.87844 -35.32533 -32.38054 -29.45505 -28.16056 -27.48606 -25.90260 -22.61594 -21.32932 -20.17255 -18.33997 -17.13476 -16.79439 -16.41114 -16.10840 -15.41200 -15.26258 -14.38018 -13.94607 -13.66251 -13.38439 -12.95862 -12.87184 -12.36612 -12.34079 -12.12407 -11.80320 -11.63052 -11.50381 -11.29217 -11.19091 -10.81957 -10.70783 -10.60126 -10.10168 -8.10665 -6.25226 1.40841 1.42005 1.52353 2.41918 3.06541 3.42498 3.99122 4.05373 4.10183 4.51111 4.61027 4.62627 4.78144 4.83051 4.86604 4.90062 4.97851 5.00056 5.07872 5.16719 5.27470 5.32491 5.38413 5.54479 5.63714 5.66189 5.75870 5.98922 5.99726 6.28267 6.68260 6.86940 7.43115 8.93282 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.028593 B = 0.013841 C = 0.009870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 979.034644 B = 2022.555323 C = 2836.195209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.406 6.406 3 C 0.075 3.925 4 C 0.061 3.939 5 H -0.005 1.005 6 C -0.523 4.523 7 H 0.060 0.940 8 C 0.010 3.990 9 N -0.919 5.919 10 Si 0.955 3.045 11 H -0.275 1.275 12 H -0.285 1.285 13 H -0.266 1.266 14 C -0.079 4.079 15 C -0.098 4.098 16 C -0.119 4.119 17 C -0.119 4.119 18 C -0.112 4.112 19 H 0.027 0.973 20 H 0.039 0.961 21 H 0.100 0.900 22 H 0.014 0.986 23 H 0.050 0.950 24 H 0.261 0.739 25 H 0.044 0.956 26 H 0.050 0.950 27 H 0.054 0.946 28 H 0.072 0.928 29 H 0.073 0.927 30 H 0.078 0.922 31 H 0.054 0.946 32 H 0.057 0.943 33 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.066 -5.579 -6.478 8.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.326 6.326 3 C -0.001 4.001 4 C 0.043 3.957 5 H 0.013 0.987 6 C -0.561 4.561 7 H 0.078 0.922 8 C -0.188 4.188 9 N -0.559 5.559 10 Si 0.780 3.220 11 H -0.201 1.201 12 H -0.211 1.211 13 H -0.191 1.191 14 C -0.097 4.097 15 C -0.136 4.136 16 C -0.157 4.157 17 C -0.157 4.157 18 C -0.150 4.150 19 H 0.045 0.955 20 H 0.058 0.942 21 H 0.118 0.882 22 H 0.032 0.968 23 H 0.069 0.931 24 H 0.070 0.930 25 H 0.063 0.937 26 H 0.069 0.931 27 H 0.073 0.927 28 H 0.091 0.909 29 H 0.091 0.909 30 H 0.096 0.904 31 H 0.073 0.927 32 H 0.075 0.925 33 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -0.021 -5.684 -6.310 8.492 hybrid contribution -0.151 1.447 0.575 1.565 sum -0.172 -4.237 -5.734 7.132 Atomic orbital electron populations 1.22777 0.81928 1.02895 0.99350 1.87883 1.19583 1.29806 1.95334 1.22693 0.96543 0.82590 0.98276 1.18712 0.89691 0.94512 0.92792 0.98706 1.21473 1.28145 1.01232 1.05204 0.92175 1.25823 0.95601 1.01938 0.95441 1.70029 1.37393 1.38489 1.09991 0.85602 0.79166 0.80075 0.77150 1.20083 1.21058 1.19064 1.21710 0.95167 0.95863 0.96976 1.22253 0.97061 0.94426 0.99840 1.22524 0.94306 0.99083 0.99738 1.22337 0.98259 0.94695 1.00379 1.22082 0.95592 0.96647 1.00659 0.95471 0.94241 0.88184 0.96801 0.93149 0.92967 0.93709 0.93086 0.92727 0.90913 0.90867 0.90368 0.92739 0.92457 0.93522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.93 11.01 113.37 1.25 2.18 16 2 O -0.41 -18.05 7.65 -148.98 -1.14 -19.19 16 3 C 0.08 3.79 5.13 71.98 0.37 4.16 16 4 C 0.06 3.19 1.46 -11.55 -0.02 3.17 16 5 H -0.01 -0.31 8.12 -2.39 -0.02 -0.33 16 6 C -0.52 -28.77 7.57 25.60 0.19 -28.58 16 7 H 0.06 3.23 7.45 -2.91 -0.02 3.21 16 8 C 0.01 0.58 5.29 84.66 0.45 1.03 16 9 N -0.92 -53.67 11.29 21.45 0.24 -53.42 16 10 Si 0.95 43.56 29.54 68.60 2.03 45.59 16 11 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 12 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 13 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 14 C -0.08 -3.38 2.47 -10.07 -0.02 -3.41 16 15 C -0.10 -3.69 4.69 31.67 0.15 -3.54 16 16 C -0.12 -3.54 6.91 31.88 0.22 -3.32 16 17 C -0.12 -3.74 6.83 31.65 0.22 -3.53 16 18 C -0.11 -4.35 5.82 31.30 0.18 -4.17 16 19 H 0.03 0.94 8.14 -2.39 -0.02 0.92 16 20 H 0.04 1.24 8.14 -2.38 -0.02 1.22 16 21 H 0.10 2.78 8.14 -2.39 -0.02 2.76 16 22 H 0.01 0.68 8.14 -2.39 -0.02 0.66 16 23 H 0.05 2.84 5.95 -2.39 -0.01 2.83 16 24 H 0.26 14.50 8.31 -92.71 -0.77 13.73 16 25 H 0.04 1.94 8.14 -2.39 -0.02 1.92 16 26 H 0.05 2.13 6.82 -2.39 -0.02 2.11 16 27 H 0.05 1.98 7.93 -2.39 -0.02 1.96 16 28 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 29 H 0.07 1.90 8.14 -2.39 -0.02 1.89 16 30 H 0.08 2.03 8.14 -2.39 -0.02 2.02 16 31 H 0.05 1.75 8.14 -2.38 -0.02 1.73 16 32 H 0.06 2.04 8.14 -2.38 -0.02 2.02 16 33 H 0.05 2.05 7.10 -2.39 -0.02 2.03 16 Total: -1.00 -60.28 260.07 5.16 -55.11 By element: Atomic # 1 Polarization: 6.87 SS G_CDS: 1.05 Total: 7.91 kcal Atomic # 6 Polarization: -38.98 SS G_CDS: 2.98 Total: -36.00 kcal Atomic # 7 Polarization: -53.67 SS G_CDS: 0.24 Total: -53.42 kcal Atomic # 8 Polarization: -18.05 SS G_CDS: -1.14 Total: -19.19 kcal Atomic # 14 Polarization: 43.56 SS G_CDS: 2.03 Total: 45.59 kcal Total: -60.28 5.16 -55.11 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259863646.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.944 kcal (2) G-P(sol) polarization free energy of solvation -60.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.114 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds