Wall clock time and date at job start Mon Mar 30 2020 02:31:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42901 * 113.99754 * 2 1 4 4 C 1.53006 * 109.47164 * 184.95214 * 3 2 1 5 5 H 1.09003 * 109.47010 * 305.34865 * 4 3 2 6 6 C 1.50699 * 109.46678 * 65.34875 * 4 3 2 7 7 H 1.08001 * 119.99705 * 65.07682 * 6 4 3 8 8 C 1.37876 * 119.99807 * 245.06361 * 6 4 3 9 9 N 1.31521 * 119.99558 * 186.25256 * 8 6 4 10 10 Si 1.86801 * 120.00254 * 6.25980 * 8 6 4 11 11 H 1.48497 * 109.46800 * 266.12669 * 10 8 6 12 12 H 1.48502 * 109.46787 * 26.12214 * 10 8 6 13 13 H 1.48498 * 109.46946 * 146.12568 * 10 8 6 14 14 C 1.53000 * 109.47067 * 185.35009 * 4 3 2 15 15 C 1.54263 * 110.02958 * 177.90812 * 14 4 3 16 16 C 1.54963 * 104.16021 * 217.13640 * 15 14 4 17 17 C 1.54890 * 102.77696 * 37.89234 * 16 15 14 18 18 C 1.53878 * 110.03308 * 60.69261 * 14 4 3 19 19 H 1.08999 * 109.47276 * 299.99953 * 1 2 3 20 20 H 1.08999 * 109.46847 * 60.00511 * 1 2 3 21 21 H 1.08999 * 109.46778 * 179.97438 * 1 2 3 22 22 H 1.09007 * 109.47229 * 64.95788 * 3 2 1 23 23 H 1.08998 * 109.47570 * 304.95013 * 3 2 1 24 24 H 0.96998 * 119.99562 * 180.02562 * 9 8 6 25 25 H 1.08994 * 110.02107 * 299.29940 * 14 4 3 26 26 H 1.09001 * 110.49010 * 335.78165 * 15 14 4 27 27 H 1.09004 * 110.48937 * 98.42782 * 15 14 4 28 28 H 1.09001 * 110.72173 * 279.57392 * 16 15 14 29 29 H 1.09006 * 110.92313 * 156.29668 * 16 15 14 30 30 H 1.09000 * 110.48584 * 203.40702 * 17 16 15 31 31 H 1.08997 * 110.60547 * 80.81666 * 17 16 15 32 32 H 1.09000 * 110.03263 * 238.57163 * 18 14 4 33 33 H 1.09001 * 110.03071 * 359.95114 * 18 14 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5305 1.1869 -0.1245 5 1 3.9101 0.5369 0.6639 6 6 3.8803 0.6029 -1.4690 7 1 3.6564 1.1526 -2.3713 8 6 4.4864 -0.6330 -1.5471 9 7 4.9030 -1.0889 -2.7083 10 14 4.7158 -1.6601 -0.0037 11 1 6.0627 -1.4030 0.5662 12 1 3.6782 -1.2936 0.9934 13 1 4.5888 -3.1000 -0.3440 14 6 4.1629 2.5737 0.0093 15 6 5.6998 2.4627 -0.0620 16 6 6.2037 3.5199 0.9528 17 6 5.1731 3.4086 2.1037 18 6 3.8279 3.1752 1.3854 19 1 -0.3634 0.5138 0.8900 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3633 -1.0277 -0.0005 22 1 1.7605 1.8144 0.9311 23 1 1.6202 1.8769 -0.8423 24 1 5.3290 -1.9585 -2.7633 25 1 3.7987 3.2279 -0.7828 26 1 6.0245 1.4651 0.2339 27 1 6.0532 2.6978 -1.0660 28 1 6.1850 4.5168 0.5125 29 1 7.2052 3.2740 1.3061 30 1 5.1427 4.3336 2.6793 31 1 5.4110 2.5649 2.7514 32 1 3.3017 4.1217 1.2612 33 1 3.2141 2.4795 1.9576 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259863650.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:39 Heat of formation + Delta-G solvation = -69.271484 kcal Electronic energy + Delta-G solvation = -13392.173501 eV Core-core repulsion = 11224.101606 eV Total energy + Delta-G solvation = -2168.071895 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -38.16823 -36.59939 -33.05804 -31.06168 -28.15362 -26.95620 -25.63893 -24.23796 -20.80839 -19.95353 -18.52673 -16.99561 -15.67847 -15.02275 -14.78262 -14.31873 -14.11798 -13.72229 -12.75571 -12.47186 -12.38949 -12.00362 -11.29637 -11.08721 -10.78315 -10.64711 -10.56438 -10.36545 -10.10002 -9.95444 -9.75276 -9.58721 -9.11324 -9.02594 -8.58279 -8.36068 -5.93747 -3.90841 3.40665 3.50166 3.62579 4.59946 4.69885 5.21445 5.30110 5.35412 5.45356 5.77403 5.86545 5.97997 6.07951 6.12054 6.12715 6.16740 6.28896 6.29649 6.34104 6.41777 6.44345 6.61414 6.75991 6.87288 7.06148 7.08677 7.21414 7.44963 7.87054 8.17184 8.62644 9.09511 9.72328 11.19814 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.024937 B = 0.016645 C = 0.012031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1122.565856 B = 1681.774310 C = 2326.772040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.372 6.372 3 C 0.072 3.928 4 C 0.014 3.986 5 H 0.046 0.954 6 C -0.494 4.494 7 H 0.069 0.931 8 C 0.078 3.922 9 N -0.906 5.906 10 Si 0.871 3.129 11 H -0.284 1.284 12 H -0.252 1.252 13 H -0.293 1.293 14 C -0.074 4.074 15 C -0.098 4.098 16 C -0.130 4.130 17 C -0.123 4.123 18 C -0.129 4.129 19 H 0.026 0.974 20 H 0.033 0.967 21 H 0.074 0.926 22 H 0.020 0.980 23 H 0.035 0.965 24 H 0.260 0.740 25 H 0.060 0.940 26 H 0.064 0.936 27 H 0.063 0.937 28 H 0.058 0.942 29 H 0.056 0.944 30 H 0.053 0.947 31 H 0.059 0.941 32 H 0.051 0.949 33 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.795 6.733 8.270 11.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.290 6.290 3 C -0.005 4.005 4 C -0.005 4.005 5 H 0.064 0.936 6 C -0.532 4.532 7 H 0.087 0.913 8 C -0.123 4.123 9 N -0.544 5.544 10 Si 0.700 3.300 11 H -0.210 1.210 12 H -0.177 1.177 13 H -0.220 1.220 14 C -0.093 4.093 15 C -0.136 4.136 16 C -0.167 4.167 17 C -0.161 4.161 18 C -0.167 4.167 19 H 0.045 0.955 20 H 0.052 0.948 21 H 0.092 0.908 22 H 0.038 0.962 23 H 0.053 0.947 24 H 0.070 0.930 25 H 0.078 0.922 26 H 0.083 0.917 27 H 0.082 0.918 28 H 0.077 0.923 29 H 0.075 0.925 30 H 0.072 0.928 31 H 0.078 0.922 32 H 0.070 0.930 33 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -2.601 6.408 8.171 10.705 hybrid contribution -0.176 -0.444 0.655 0.811 sum -2.777 5.963 8.826 11.008 Atomic orbital electron populations 1.22609 0.83782 1.01440 0.98698 1.88031 1.17066 1.28930 1.94953 1.22895 0.97676 0.83247 0.96673 1.19408 0.89025 0.93219 0.98799 0.93638 1.20761 1.38374 1.02896 0.91120 0.91336 1.24982 0.94464 0.97272 0.95566 1.69923 1.40657 1.19446 1.24421 0.86912 0.78403 0.79613 0.85120 1.21016 1.17668 1.21952 1.21741 0.95602 0.97624 0.94331 1.22178 0.95098 0.98069 0.98207 1.22583 0.97826 0.99532 0.96788 1.22334 0.95928 1.00275 0.97522 1.22406 0.96720 0.99834 0.97709 0.95532 0.94835 0.90789 0.96227 0.94691 0.92988 0.92184 0.91733 0.91796 0.92285 0.92539 0.92836 0.92199 0.92984 0.92084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.55 11.01 101.05 1.11 1.66 16 2 O -0.37 -8.50 10.46 -35.23 -0.37 -8.87 16 3 C 0.07 1.55 5.14 37.16 0.19 1.74 16 4 C 0.01 0.34 1.23 -91.77 -0.11 0.23 16 5 H 0.05 1.13 4.63 -51.93 -0.24 0.88 16 6 C -0.49 -13.85 8.01 -34.44 -0.28 -14.13 16 7 H 0.07 2.10 8.06 -52.49 -0.42 1.68 16 8 C 0.08 2.29 5.47 -17.82 -0.10 2.20 16 9 N -0.91 -28.23 13.96 55.43 0.77 -27.46 16 10 Si 0.87 22.63 27.20 -169.99 -4.62 18.01 16 11 H -0.28 -7.15 7.11 56.52 0.40 -6.75 16 12 H -0.25 -6.46 6.46 56.52 0.37 -6.09 16 13 H -0.29 -7.66 7.11 56.52 0.40 -7.26 16 14 C -0.07 -1.48 2.49 -89.50 -0.22 -1.70 16 15 C -0.10 -1.93 5.75 -25.03 -0.14 -2.07 16 16 C -0.13 -2.04 6.91 -24.70 -0.17 -2.21 16 17 C -0.12 -1.85 6.83 -25.07 -0.17 -2.02 16 18 C -0.13 -2.15 5.85 -25.61 -0.15 -2.30 16 19 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 20 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 21 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 22 H 0.02 0.38 6.38 -51.93 -0.33 0.04 16 23 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 24 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 25 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 26 H 0.06 1.40 7.84 -51.93 -0.41 0.99 16 27 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 28 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 29 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.06 1.03 6.40 -51.93 -0.33 0.70 16 LS Contribution 262.15 15.07 3.95 3.95 Total: -1.00 -30.87 262.15 -5.87 -36.74 By element: Atomic # 1 Polarization: 1.79 SS G_CDS: -5.56 Total: -3.76 kcal Atomic # 6 Polarization: -18.57 SS G_CDS: -0.04 Total: -18.61 kcal Atomic # 7 Polarization: -28.23 SS G_CDS: 0.77 Total: -27.46 kcal Atomic # 8 Polarization: -8.50 SS G_CDS: -0.37 Total: -8.87 kcal Atomic # 14 Polarization: 22.63 SS G_CDS: -4.62 Total: 18.01 kcal Total LS contribution 3.95 Total: 3.95 kcal Total: -30.87 -5.87 -36.74 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259863650.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.534 kcal (2) G-P(sol) polarization free energy of solvation -30.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.865 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.738 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds