Wall clock time and date at job start Mon Mar 30 2020 02:31:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42901 * 113.99754 * 2 1 4 4 C 1.53006 * 109.47164 * 184.95214 * 3 2 1 5 5 H 1.09003 * 109.47010 * 305.34865 * 4 3 2 6 6 C 1.50699 * 109.46678 * 65.34875 * 4 3 2 7 7 H 1.08001 * 119.99705 * 65.07682 * 6 4 3 8 8 C 1.37876 * 119.99807 * 245.06361 * 6 4 3 9 9 N 1.31521 * 119.99558 * 186.25256 * 8 6 4 10 10 Si 1.86801 * 120.00254 * 6.25980 * 8 6 4 11 11 H 1.48497 * 109.46800 * 266.12669 * 10 8 6 12 12 H 1.48502 * 109.46787 * 26.12214 * 10 8 6 13 13 H 1.48498 * 109.46946 * 146.12568 * 10 8 6 14 14 C 1.53000 * 109.47067 * 185.35009 * 4 3 2 15 15 C 1.54263 * 110.02958 * 177.90812 * 14 4 3 16 16 C 1.54963 * 104.16021 * 217.13640 * 15 14 4 17 17 C 1.54890 * 102.77696 * 37.89234 * 16 15 14 18 18 C 1.53878 * 110.03308 * 60.69261 * 14 4 3 19 19 H 1.08999 * 109.47276 * 299.99953 * 1 2 3 20 20 H 1.08999 * 109.46847 * 60.00511 * 1 2 3 21 21 H 1.08999 * 109.46778 * 179.97438 * 1 2 3 22 22 H 1.09007 * 109.47229 * 64.95788 * 3 2 1 23 23 H 1.08998 * 109.47570 * 304.95013 * 3 2 1 24 24 H 0.96998 * 119.99562 * 180.02562 * 9 8 6 25 25 H 1.08994 * 110.02107 * 299.29940 * 14 4 3 26 26 H 1.09001 * 110.49010 * 335.78165 * 15 14 4 27 27 H 1.09004 * 110.48937 * 98.42782 * 15 14 4 28 28 H 1.09001 * 110.72173 * 279.57392 * 16 15 14 29 29 H 1.09006 * 110.92313 * 156.29668 * 16 15 14 30 30 H 1.09000 * 110.48584 * 203.40702 * 17 16 15 31 31 H 1.08997 * 110.60547 * 80.81666 * 17 16 15 32 32 H 1.09000 * 110.03263 * 238.57163 * 18 14 4 33 33 H 1.09001 * 110.03071 * 359.95114 * 18 14 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5305 1.1869 -0.1245 5 1 3.9101 0.5369 0.6639 6 6 3.8803 0.6029 -1.4690 7 1 3.6564 1.1526 -2.3713 8 6 4.4864 -0.6330 -1.5471 9 7 4.9030 -1.0889 -2.7083 10 14 4.7158 -1.6601 -0.0037 11 1 6.0627 -1.4030 0.5662 12 1 3.6782 -1.2936 0.9934 13 1 4.5888 -3.1000 -0.3440 14 6 4.1629 2.5737 0.0093 15 6 5.6998 2.4627 -0.0620 16 6 6.2037 3.5199 0.9528 17 6 5.1731 3.4086 2.1037 18 6 3.8279 3.1752 1.3854 19 1 -0.3634 0.5138 0.8900 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3633 -1.0277 -0.0005 22 1 1.7605 1.8144 0.9311 23 1 1.6202 1.8769 -0.8423 24 1 5.3290 -1.9585 -2.7633 25 1 3.7987 3.2279 -0.7828 26 1 6.0245 1.4651 0.2339 27 1 6.0532 2.6978 -1.0660 28 1 6.1850 4.5168 0.5125 29 1 7.2052 3.2740 1.3061 30 1 5.1427 4.3336 2.6793 31 1 5.4110 2.5649 2.7514 32 1 3.3017 4.1217 1.2612 33 1 3.2141 2.4795 1.9576 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259863650.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:39 Heat of formation + Delta-G solvation = -89.032504 kcal Electronic energy + Delta-G solvation = -13393.030403 eV Core-core repulsion = 11224.101606 eV Total energy + Delta-G solvation = -2168.928797 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.73246 -38.14831 -35.03254 -32.97638 -29.56893 -28.39372 -27.40261 -25.97039 -22.55572 -21.28501 -20.17876 -19.10347 -17.28462 -16.66315 -16.25829 -16.14862 -15.52414 -15.43791 -14.59393 -14.12002 -13.99380 -13.65553 -13.01063 -12.81740 -12.58777 -12.19008 -11.82855 -11.78238 -11.74128 -11.53763 -11.42436 -11.33983 -10.93265 -10.83273 -10.58739 -10.26345 -8.21707 -6.20246 1.32330 1.38469 1.54222 2.42759 3.16158 3.17960 3.91844 3.95702 4.08997 4.39908 4.43941 4.61016 4.61156 4.71873 4.74688 4.81283 4.83222 4.88290 4.95734 5.03862 5.11350 5.16346 5.23269 5.35068 5.45907 5.56486 5.60430 5.75804 5.82172 6.35897 6.56413 6.85445 7.45101 8.96004 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.024937 B = 0.016645 C = 0.012031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1122.565856 B = 1681.774310 C = 2326.772040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.413 6.413 3 C 0.075 3.925 4 C 0.011 3.989 5 H 0.037 0.963 6 C -0.484 4.484 7 H 0.026 0.974 8 C 0.021 3.979 9 N -0.956 5.956 10 Si 0.929 3.071 11 H -0.272 1.272 12 H -0.242 1.242 13 H -0.296 1.296 14 C -0.076 4.076 15 C -0.106 4.106 16 C -0.120 4.120 17 C -0.119 4.119 18 C -0.123 4.123 19 H 0.055 0.945 20 H 0.038 0.962 21 H 0.088 0.912 22 H 0.055 0.945 23 H 0.030 0.970 24 H 0.260 0.740 25 H 0.053 0.947 26 H 0.037 0.963 27 H 0.043 0.957 28 H 0.075 0.925 29 H 0.069 0.931 30 H 0.085 0.915 31 H 0.058 0.942 32 H 0.075 0.925 33 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.421 8.035 11.004 14.048 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.332 6.332 3 C -0.001 4.001 4 C -0.008 4.008 5 H 0.055 0.945 6 C -0.522 4.522 7 H 0.045 0.955 8 C -0.175 4.175 9 N -0.598 5.598 10 Si 0.756 3.244 11 H -0.198 1.198 12 H -0.166 1.166 13 H -0.223 1.223 14 C -0.095 4.095 15 C -0.143 4.143 16 C -0.158 4.158 17 C -0.156 4.156 18 C -0.160 4.160 19 H 0.073 0.927 20 H 0.057 0.943 21 H 0.106 0.894 22 H 0.073 0.927 23 H 0.048 0.952 24 H 0.069 0.931 25 H 0.071 0.929 26 H 0.056 0.944 27 H 0.062 0.938 28 H 0.094 0.906 29 H 0.088 0.912 30 H 0.104 0.896 31 H 0.077 0.923 32 H 0.094 0.906 33 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -3.241 7.730 10.924 13.769 hybrid contribution -0.047 -0.797 -0.289 0.849 sum -3.289 6.934 10.635 13.115 Atomic orbital electron populations 1.22860 0.80959 1.03028 1.00299 1.87955 1.20317 1.29619 1.95299 1.22781 0.95781 0.83354 0.98204 1.19451 0.91154 0.94807 0.95380 0.94506 1.21007 1.36820 1.02243 0.92088 0.95540 1.25738 0.94852 0.98691 0.98257 1.70064 1.42889 1.20107 1.26723 0.85981 0.79040 0.77593 0.81833 1.19779 1.16587 1.22312 1.21684 0.95358 0.95558 0.96862 1.22177 0.95400 0.98228 0.98531 1.22540 0.98720 0.98708 0.95800 1.22344 0.94213 1.01925 0.97162 1.22342 0.98043 1.00609 0.95049 0.92688 0.94345 0.89372 0.92749 0.95163 0.93084 0.92861 0.94392 0.93840 0.90591 0.91240 0.89614 0.92273 0.90591 0.92044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.79 11.01 113.37 1.25 2.04 16 2 O -0.41 -18.26 10.46 -148.98 -1.56 -19.82 16 3 C 0.08 3.12 5.14 71.98 0.37 3.49 16 4 C 0.01 0.51 1.23 -11.54 -0.01 0.50 16 5 H 0.04 1.78 4.63 -2.39 -0.01 1.77 16 6 C -0.48 -27.97 8.01 25.60 0.21 -27.77 16 7 H 0.03 1.70 8.06 -2.91 -0.02 1.68 16 8 C 0.02 1.24 5.47 84.65 0.46 1.70 16 9 N -0.96 -61.92 13.96 21.45 0.30 -61.62 16 10 Si 0.93 47.37 27.20 68.60 1.87 49.24 16 11 H -0.27 -13.21 7.11 99.48 0.71 -12.50 16 12 H -0.24 -11.85 6.46 99.48 0.64 -11.21 16 13 H -0.30 -15.12 7.11 99.48 0.71 -14.42 16 14 C -0.08 -2.94 2.49 -10.07 -0.03 -2.97 16 15 C -0.11 -4.12 5.75 31.69 0.18 -3.94 16 16 C -0.12 -3.42 6.91 31.91 0.22 -3.20 16 17 C -0.12 -3.08 6.83 31.67 0.22 -2.86 16 18 C -0.12 -3.64 5.85 31.32 0.18 -3.45 16 19 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 20 H 0.04 1.17 8.14 -2.39 -0.02 1.15 16 21 H 0.09 2.52 8.14 -2.39 -0.02 2.50 16 22 H 0.05 1.88 6.38 -2.38 -0.02 1.87 16 23 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 24 H 0.26 15.94 8.31 -92.71 -0.77 15.17 16 25 H 0.05 2.11 8.14 -2.39 -0.02 2.09 16 26 H 0.04 1.65 7.84 -2.39 -0.02 1.63 16 27 H 0.04 1.80 8.14 -2.38 -0.02 1.78 16 28 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 29 H 0.07 1.81 8.14 -2.38 -0.02 1.79 16 30 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 31 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 32 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 33 H 0.06 1.83 6.40 -2.39 -0.02 1.81 16 Total: -1.00 -68.50 262.15 4.64 -63.85 By element: Atomic # 1 Polarization: 3.82 SS G_CDS: 0.99 Total: 4.81 kcal Atomic # 6 Polarization: -39.51 SS G_CDS: 3.05 Total: -36.46 kcal Atomic # 7 Polarization: -61.92 SS G_CDS: 0.30 Total: -61.62 kcal Atomic # 8 Polarization: -18.26 SS G_CDS: -1.56 Total: -19.82 kcal Atomic # 14 Polarization: 47.37 SS G_CDS: 1.87 Total: 49.24 kcal Total: -68.50 4.64 -63.85 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259863650.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.178 kcal (2) G-P(sol) polarization free energy of solvation -68.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.855 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds