Wall clock time and date at job start Mon Mar 30 2020 02:29:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09008 * 109.46804 * 2 1 4 4 C 1.50703 * 109.47294 * 240.00727 * 2 1 3 5 5 H 1.08000 * 119.99522 * 245.49761 * 4 2 1 6 6 C 1.37874 * 120.00224 * 65.48382 * 4 2 1 7 7 N 1.31516 * 119.99957 * 9.30202 * 6 4 2 8 8 Si 1.86803 * 120.00020 * 189.29427 * 6 4 2 9 9 H 1.48497 * 109.46961 * 85.00016 * 8 6 4 10 10 H 1.48503 * 109.46830 * 204.99975 * 8 6 4 11 11 H 1.48497 * 109.46880 * 324.99618 * 8 6 4 12 12 C 1.53001 * 109.47274 * 120.00171 * 2 1 3 13 13 H 1.08998 * 109.53736 * 60.16982 * 12 2 1 14 14 C 1.54208 * 109.53954 * 299.99863 * 12 2 1 15 15 C 1.46278 * 111.98468 * 162.60539 * 14 12 2 16 16 C 1.54120 * 112.20625 * 61.41646 * 15 14 12 17 17 O 1.40319 * 108.70201 * 280.43753 * 16 15 14 18 18 C 1.43999 * 116.57776 * 95.04370 * 17 16 15 19 19 C 1.50623 * 109.53733 * 180.41404 * 12 2 1 20 20 H 1.09006 * 109.46658 * 186.23706 * 1 2 3 21 21 H 1.09003 * 109.46920 * 306.23240 * 1 2 3 22 22 H 1.09000 * 109.47389 * 66.23683 * 1 2 3 23 23 H 0.97001 * 120.00382 * 179.97438 * 7 6 4 24 24 H 1.09001 * 108.97595 * 283.25144 * 14 12 2 25 25 H 1.09001 * 108.97074 * 41.95920 * 14 12 2 26 26 H 1.09000 * 108.93388 * 182.11762 * 15 14 12 27 27 H 1.09004 * 108.93943 * 300.71051 * 15 14 12 28 28 H 1.08997 * 109.59106 * 40.20073 * 16 15 14 29 29 H 1.08997 * 109.59692 * 160.66948 * 16 15 14 30 30 H 1.08995 * 108.69468 * 78.90401 * 18 17 16 31 31 H 1.08998 * 108.69147 * 197.00408 * 18 17 16 32 32 H 1.09009 * 108.88515 * 330.97519 * 19 12 2 33 33 H 1.09006 * 108.88604 * 89.43263 * 19 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7103 -1.2306 5 1 2.5781 -1.6372 -1.1340 6 6 1.7951 -0.1769 -2.4796 7 7 1.2955 1.0344 -2.5933 8 14 2.1834 -1.1745 -4.0104 9 1 1.0354 -2.0614 -4.3276 10 1 2.4290 -0.2557 -5.1509 11 1 3.3946 -1.9993 -3.7696 12 6 2.0400 -0.7213 1.2492 13 1 1.6798 -1.7500 1.2488 14 6 1.5269 0.0044 2.5094 15 6 1.6243 -0.8357 3.7029 16 6 3.0795 -1.2346 4.0173 17 8 3.4470 -2.2955 3.1757 18 6 4.1377 -1.9453 1.9617 19 6 3.5462 -0.7133 1.2558 20 1 -0.3633 -1.0217 0.1117 21 1 -0.3633 0.6074 0.8290 22 1 -0.3634 0.4141 -0.9405 23 1 1.1289 1.4098 -3.4720 24 1 2.1167 0.9081 2.6629 25 1 0.4846 0.2847 2.3572 26 1 1.2154 -0.2904 4.5536 27 1 1.0353 -1.7397 3.5483 28 1 3.7377 -0.3837 3.8418 29 1 3.1554 -1.5500 5.0579 30 1 5.1821 -1.7439 2.1996 31 1 4.0930 -2.7927 1.2775 32 1 3.9035 -0.6913 0.2262 33 1 3.8920 0.1856 1.7664 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259951591.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:16 Heat of formation + Delta-G solvation = -88.456600 kcal Electronic energy + Delta-G solvation = -13458.870914 eV Core-core repulsion = 11289.967090 eV Total energy + Delta-G solvation = -2168.903824 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.44639 -37.35878 -34.81756 -33.42146 -31.57608 -27.70579 -26.90674 -26.20619 -22.50603 -21.58076 -20.54510 -18.26523 -17.61856 -17.01624 -16.39695 -15.93725 -15.15358 -14.83937 -14.40245 -14.14953 -13.77085 -13.72195 -13.06251 -12.84226 -12.63890 -12.36941 -12.16283 -12.09501 -11.88455 -11.59581 -11.37973 -11.15343 -10.69665 -10.60373 -10.39660 -10.19379 -8.09580 -6.16145 1.40375 1.42367 1.50426 2.44693 3.02315 3.21174 3.90452 4.01930 4.16035 4.26433 4.30158 4.51294 4.67513 4.72850 4.83069 4.85175 4.92595 5.05760 5.14023 5.24949 5.28928 5.34776 5.38318 5.48510 5.57258 5.62302 5.68432 6.04730 6.10245 6.43861 6.56034 6.95706 7.49628 8.99013 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.047800 B = 0.010638 C = 0.009271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 585.630352 B = 2631.518919 C = 3019.340903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.044 3.956 3 H -0.002 1.002 4 C -0.519 4.519 5 H 0.054 0.946 6 C 0.011 3.989 7 N -0.921 5.921 8 Si 0.944 3.056 9 H -0.278 1.278 10 H -0.287 1.287 11 H -0.266 1.266 12 C -0.063 4.063 13 H 0.046 0.954 14 C -0.118 4.118 15 C -0.142 4.142 16 C 0.065 3.935 17 O -0.404 6.404 18 C 0.070 3.930 19 C -0.141 4.141 20 H 0.029 0.971 21 H 0.036 0.964 22 H 0.031 0.969 23 H 0.258 0.742 24 H 0.053 0.947 25 H 0.058 0.942 26 H 0.085 0.915 27 H 0.056 0.944 28 H 0.054 0.946 29 H 0.102 0.898 30 H 0.063 0.937 31 H 0.079 0.921 32 H 0.069 0.931 33 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.284 -3.251 10.608 11.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.026 3.974 3 H 0.016 0.984 4 C -0.557 4.557 5 H 0.072 0.928 6 C -0.187 4.187 7 N -0.561 5.561 8 Si 0.770 3.230 9 H -0.204 1.204 10 H -0.213 1.213 11 H -0.191 1.191 12 C -0.082 4.082 13 H 0.064 0.936 14 C -0.155 4.155 15 C -0.180 4.180 16 C -0.012 4.012 17 O -0.323 6.323 18 C -0.006 4.006 19 C -0.178 4.178 20 H 0.048 0.952 21 H 0.055 0.945 22 H 0.050 0.950 23 H 0.067 0.933 24 H 0.071 0.929 25 H 0.076 0.924 26 H 0.104 0.896 27 H 0.075 0.925 28 H 0.072 0.928 29 H 0.120 0.880 30 H 0.081 0.919 31 H 0.098 0.902 32 H 0.088 0.912 33 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 3.202 -3.303 10.518 11.480 hybrid contribution -0.023 0.132 -1.403 1.409 sum 3.179 -3.171 9.115 10.161 Atomic orbital electron populations 1.21659 0.99074 0.98280 0.98946 1.18697 0.92155 0.94521 0.92050 0.98425 1.21491 1.34697 1.07667 0.91848 0.92801 1.25701 0.95680 0.95468 1.01822 1.70091 1.46538 1.15490 1.23975 0.85781 0.78745 0.78830 0.79608 1.20389 1.21302 1.19084 1.20771 0.94557 0.98367 0.94459 0.93553 1.20742 1.01395 0.98593 0.94765 1.21098 0.98493 1.00169 0.98218 1.22484 0.94207 0.90274 0.94239 1.87374 1.77799 1.34495 1.32667 1.22930 0.94607 0.97688 0.85345 1.21916 0.96622 0.97813 1.01475 0.95201 0.94526 0.94999 0.93262 0.92868 0.92384 0.89622 0.92516 0.92758 0.87979 0.91892 0.90243 0.91245 0.92576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.89 8.62 71.98 0.62 -5.27 16 2 C 0.04 2.21 1.74 -11.54 -0.02 2.19 16 3 H 0.00 -0.14 8.09 -2.38 -0.02 -0.16 16 4 C -0.52 -28.33 7.18 25.60 0.18 -28.14 16 5 H 0.05 2.89 7.33 -2.91 -0.02 2.87 16 6 C 0.01 0.64 5.15 84.65 0.44 1.07 16 7 N -0.92 -54.26 12.16 21.45 0.26 -54.00 16 8 Si 0.94 43.98 29.55 68.60 2.03 46.00 16 9 H -0.28 -12.75 7.11 99.48 0.71 -12.05 16 10 H -0.29 -13.22 7.11 99.48 0.71 -12.51 16 11 H -0.27 -11.92 7.11 99.48 0.71 -11.22 16 12 C -0.06 -2.57 1.43 -11.15 -0.02 -2.58 16 13 H 0.05 2.00 7.83 -2.39 -0.02 1.98 16 14 C -0.12 -3.99 4.67 28.93 0.14 -3.85 16 15 C -0.14 -3.93 5.47 28.90 0.16 -3.77 16 16 C 0.06 1.68 6.38 72.36 0.46 2.14 16 17 O -0.40 -12.74 10.17 -143.43 -1.46 -14.20 16 18 C 0.07 2.21 6.67 72.26 0.48 2.69 16 19 C -0.14 -5.22 4.67 30.10 0.14 -5.08 16 20 H 0.03 1.36 8.14 -2.38 -0.02 1.34 16 21 H 0.04 1.56 6.40 -2.39 -0.02 1.54 16 22 H 0.03 1.70 6.78 -2.39 -0.02 1.68 16 23 H 0.26 14.55 8.31 -92.71 -0.77 13.78 16 24 H 0.05 1.75 7.60 -2.39 -0.02 1.73 16 25 H 0.06 2.02 5.81 -2.39 -0.01 2.01 16 26 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 27 H 0.06 1.69 8.13 -2.38 -0.02 1.67 16 28 H 0.05 1.35 6.98 -2.39 -0.02 1.33 16 29 H 0.10 2.08 8.14 -2.39 -0.02 2.06 16 30 H 0.06 1.68 8.14 -2.39 -0.02 1.67 16 31 H 0.08 2.53 8.14 -2.39 -0.02 2.51 16 32 H 0.07 2.94 6.30 -2.38 -0.02 2.92 16 33 H 0.06 1.94 6.84 -2.38 -0.02 1.92 16 Total: -1.00 -60.29 252.27 4.47 -55.82 By element: Atomic # 1 Polarization: 5.91 SS G_CDS: 1.06 Total: 6.97 kcal Atomic # 6 Polarization: -43.18 SS G_CDS: 2.58 Total: -40.59 kcal Atomic # 7 Polarization: -54.26 SS G_CDS: 0.26 Total: -54.00 kcal Atomic # 8 Polarization: -12.74 SS G_CDS: -1.46 Total: -14.20 kcal Atomic # 14 Polarization: 43.98 SS G_CDS: 2.03 Total: 46.00 kcal Total: -60.29 4.47 -55.82 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259951591.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.640 kcal (2) G-P(sol) polarization free energy of solvation -60.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.816 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.457 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds