Wall clock time and date at job start Mon Mar 30 2020 02:29:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09003 * 109.47486 * 2 1 4 4 C 1.50701 * 109.47080 * 120.00149 * 2 1 3 5 5 H 1.08008 * 119.99961 * 119.99571 * 4 2 1 6 6 C 1.37879 * 120.00139 * 299.99769 * 4 2 1 7 7 N 1.31516 * 119.99701 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 120.00092 * 179.97438 * 6 4 2 9 9 H 1.48497 * 109.46931 * 359.97438 * 8 6 4 10 10 H 1.48499 * 109.46990 * 120.00063 * 8 6 4 11 11 H 1.48499 * 109.46941 * 239.99956 * 8 6 4 12 12 C 1.53005 * 109.47024 * 239.99725 * 2 1 3 13 13 H 1.08994 * 108.66179 * 307.11535 * 12 2 1 14 14 C 1.50289 * 108.78166 * 65.40106 * 12 2 1 15 15 C 1.54270 * 108.48625 * 212.97791 * 14 12 2 16 16 C 1.45987 * 111.73543 * 281.97543 * 15 14 12 17 17 O 1.44225 * 112.10149 * 60.06069 * 16 15 14 18 18 C 1.39956 * 112.36931 * 277.40992 * 17 16 15 19 19 C 1.54350 * 112.56886 * 97.12657 * 18 17 16 20 20 H 1.09000 * 109.47623 * 180.83797 * 1 2 3 21 21 H 1.09005 * 109.47024 * 300.83316 * 1 2 3 22 22 H 1.09008 * 109.47120 * 60.83294 * 1 2 3 23 23 H 0.97000 * 119.99747 * 180.02562 * 7 6 4 24 24 H 1.09002 * 109.63717 * 93.28285 * 14 12 2 25 25 H 1.09000 * 109.63403 * 332.67635 * 14 12 2 26 26 H 1.09006 * 109.03138 * 42.55788 * 15 14 12 27 27 H 1.09001 * 109.03069 * 161.46856 * 15 14 12 28 28 H 1.08999 * 108.95861 * 180.74112 * 16 15 14 29 29 H 1.09000 * 108.95032 * 299.39032 * 16 15 14 30 30 H 1.09006 * 108.86367 * 217.91984 * 18 17 16 31 31 H 1.09001 * 108.86506 * 336.43050 * 18 17 16 32 32 H 1.08999 * 109.08111 * 79.81939 * 19 18 17 33 33 H 1.08996 * 109.08381 * 198.87020 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0322 -0.7104 1.2305 5 1 2.6531 -1.5886 1.1313 6 6 1.6992 -0.2394 2.4828 7 7 0.9436 0.8302 2.6034 8 14 2.3213 -1.1205 4.0080 9 1 3.1453 -2.2878 3.6037 10 1 3.1466 -0.1875 4.8165 11 1 1.1660 -1.5867 4.8161 12 6 2.0399 -0.7213 -1.2493 13 1 1.5687 -1.7027 -1.3021 14 6 1.6428 0.0722 -2.4622 15 6 1.3732 -0.9089 -3.6219 16 6 2.6138 -1.3886 -4.2236 17 8 3.4452 -2.0837 -3.2719 18 6 4.2137 -1.2081 -2.4965 19 6 3.5695 -0.9094 -1.1261 20 1 -0.3634 -1.0275 0.0150 21 1 -0.3633 0.5267 0.8825 22 1 -0.3634 0.5009 -0.8974 23 1 0.7096 1.1618 3.4844 24 1 2.4506 0.7506 -2.7368 25 1 0.7390 0.6422 -2.2472 26 1 0.8094 -1.7612 -3.2426 27 1 0.7817 -0.4031 -4.3850 28 1 2.3714 -2.0654 -5.0429 29 1 3.1665 -0.5374 -4.6213 30 1 5.1967 -1.6507 -2.3348 31 1 4.3349 -0.2705 -3.0391 32 1 3.7731 -1.7385 -0.4483 33 1 4.0077 0.0009 -0.7170 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259951594.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:18 Heat of formation + Delta-G solvation = -66.847644 kcal Electronic energy + Delta-G solvation = -13458.169574 eV Core-core repulsion = 11290.202785 eV Total energy + Delta-G solvation = -2167.966789 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.20289 -35.75825 -33.03828 -31.94261 -29.56207 -26.33393 -25.27548 -24.09209 -21.07360 -20.46607 -18.60497 -16.26448 -16.04335 -15.82925 -14.67210 -14.33377 -13.70643 -13.21175 -12.73770 -12.60127 -12.14829 -11.81944 -11.50273 -11.01241 -10.80820 -10.71146 -10.42142 -10.35133 -10.17054 -10.07889 -9.79223 -9.49681 -9.10175 -8.72070 -8.54625 -8.24419 -5.90560 -3.95375 3.33174 3.41345 3.45648 4.24085 4.50018 5.07313 5.38891 5.41191 5.57306 5.59254 5.64708 5.80281 5.85488 6.04113 6.16531 6.28845 6.33777 6.62833 6.66178 6.79429 6.94333 6.98458 7.18488 7.22199 7.38210 7.50039 7.65674 7.83341 8.09822 8.24437 8.57113 9.08954 9.68976 11.15523 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.050014 B = 0.010400 C = 0.009117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 559.712614 B = 2691.726295 C = 3070.389017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.045 3.955 3 H 0.022 0.978 4 C -0.504 4.504 5 H 0.057 0.943 6 C 0.057 3.943 7 N -0.893 5.893 8 Si 0.886 3.114 9 H -0.274 1.274 10 H -0.286 1.286 11 H -0.286 1.286 12 C -0.075 4.075 13 H 0.055 0.945 14 C -0.116 4.116 15 C -0.155 4.155 16 C 0.065 3.935 17 O -0.374 6.374 18 C 0.057 3.943 19 C -0.126 4.126 20 H 0.023 0.977 21 H 0.079 0.921 22 H 0.009 0.991 23 H 0.257 0.743 24 H 0.050 0.950 25 H 0.071 0.929 26 H 0.069 0.931 27 H 0.062 0.938 28 H 0.077 0.923 29 H 0.045 0.955 30 H 0.068 0.932 31 H 0.041 0.959 32 H 0.066 0.934 33 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.794 -1.704 -10.436 10.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.027 3.973 3 H 0.040 0.960 4 C -0.543 4.543 5 H 0.075 0.925 6 C -0.143 4.143 7 N -0.533 5.533 8 Si 0.714 3.286 9 H -0.198 1.198 10 H -0.212 1.212 11 H -0.212 1.212 12 C -0.093 4.093 13 H 0.073 0.927 14 C -0.154 4.154 15 C -0.192 4.192 16 C -0.011 4.011 17 O -0.292 6.292 18 C -0.020 4.020 19 C -0.163 4.163 20 H 0.042 0.958 21 H 0.097 0.903 22 H 0.027 0.973 23 H 0.067 0.933 24 H 0.069 0.931 25 H 0.089 0.911 26 H 0.088 0.912 27 H 0.081 0.919 28 H 0.095 0.905 29 H 0.063 0.937 30 H 0.086 0.914 31 H 0.059 0.941 32 H 0.084 0.916 33 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 2.725 -1.800 -10.278 10.784 hybrid contribution 0.224 -0.129 0.993 1.026 sum 2.948 -1.929 -9.285 9.931 Atomic orbital electron populations 1.21863 0.99121 0.98863 0.99638 1.18796 0.92214 0.95417 0.90914 0.95987 1.21339 1.30344 1.12010 0.90567 0.92454 1.24987 0.95306 0.95068 0.98909 1.69909 1.37310 1.23187 1.22883 0.86631 0.78616 0.79780 0.83548 1.19827 1.21214 1.21216 1.20946 0.94104 0.98896 0.95361 0.92672 1.21521 1.01419 0.97505 0.94928 1.21218 0.98290 1.00455 0.99279 1.21472 0.92162 0.96289 0.91189 1.87722 1.57629 1.32886 1.50993 1.22482 0.93797 0.92746 0.93017 1.22537 0.96669 1.02061 0.95067 0.95828 0.90259 0.97251 0.93330 0.93095 0.91070 0.91223 0.91923 0.90486 0.93679 0.91408 0.94116 0.91571 0.91531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.37 8.75 37.15 0.33 -3.05 16 2 C 0.04 1.12 1.75 -91.77 -0.16 0.96 16 3 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 4 C -0.50 -13.87 7.87 -34.44 -0.27 -14.14 16 5 H 0.06 1.57 6.32 -52.48 -0.33 1.24 16 6 C 0.06 1.61 5.30 -17.82 -0.09 1.52 16 7 N -0.89 -25.96 11.33 55.43 0.63 -25.34 16 8 Si 0.89 21.66 29.54 -169.99 -5.02 16.63 16 9 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 10 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 11 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 12 C -0.07 -1.56 1.47 -91.13 -0.13 -1.69 16 13 H 0.05 1.23 7.32 -51.93 -0.38 0.85 16 14 C -0.12 -2.06 4.98 -27.42 -0.14 -2.19 16 15 C -0.15 -2.30 5.52 -29.39 -0.16 -2.47 16 16 C 0.07 0.91 6.11 33.83 0.21 1.12 16 17 O -0.37 -6.34 10.35 -32.81 -0.34 -6.68 16 18 C 0.06 0.93 6.09 37.86 0.23 1.16 16 19 C -0.13 -2.45 4.79 -25.18 -0.12 -2.57 16 20 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 21 H 0.08 2.15 6.09 -51.93 -0.32 1.84 16 22 H 0.01 0.19 6.20 -51.92 -0.32 -0.13 16 23 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 24 H 0.05 0.85 7.07 -51.93 -0.37 0.49 16 25 H 0.07 1.30 5.74 -51.93 -0.30 1.00 16 26 H 0.07 1.11 7.53 -51.93 -0.39 0.72 16 27 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 28 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 29 H 0.04 0.57 7.35 -51.93 -0.38 0.18 16 30 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 31 H 0.04 0.60 6.53 -51.93 -0.34 0.26 16 32 H 0.07 1.38 6.88 -51.93 -0.36 1.02 16 33 H 0.07 1.33 7.99 -51.93 -0.41 0.92 16 LS Contribution 249.21 15.07 3.76 3.76 Total: -1.00 -28.94 249.21 -6.44 -35.38 By element: Atomic # 1 Polarization: 2.74 SS G_CDS: -5.15 Total: -2.40 kcal Atomic # 6 Polarization: -21.04 SS G_CDS: -0.32 Total: -21.35 kcal Atomic # 7 Polarization: -25.96 SS G_CDS: 0.63 Total: -25.34 kcal Atomic # 8 Polarization: -6.34 SS G_CDS: -0.34 Total: -6.68 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.63 kcal Total LS contribution 3.76 Total: 3.76 kcal Total: -28.94 -6.44 -35.38 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259951594.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.469 kcal (2) G-P(sol) polarization free energy of solvation -28.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.379 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds