Wall clock time and date at job start Mon Mar 30 2020 02:29:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09003 * 109.47486 * 2 1 4 4 C 1.50701 * 109.47080 * 120.00149 * 2 1 3 5 5 H 1.08008 * 119.99961 * 119.99571 * 4 2 1 6 6 C 1.37879 * 120.00139 * 299.99769 * 4 2 1 7 7 N 1.31516 * 119.99701 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 120.00092 * 179.97438 * 6 4 2 9 9 H 1.48497 * 109.46931 * 359.97438 * 8 6 4 10 10 H 1.48499 * 109.46990 * 120.00063 * 8 6 4 11 11 H 1.48499 * 109.46941 * 239.99956 * 8 6 4 12 12 C 1.53005 * 109.47024 * 239.99725 * 2 1 3 13 13 H 1.08994 * 108.66179 * 307.11535 * 12 2 1 14 14 C 1.50289 * 108.78166 * 65.40106 * 12 2 1 15 15 C 1.54270 * 108.48625 * 212.97791 * 14 12 2 16 16 C 1.45987 * 111.73543 * 281.97543 * 15 14 12 17 17 O 1.44225 * 112.10149 * 60.06069 * 16 15 14 18 18 C 1.39956 * 112.36931 * 277.40992 * 17 16 15 19 19 C 1.54350 * 112.56886 * 97.12657 * 18 17 16 20 20 H 1.09000 * 109.47623 * 180.83797 * 1 2 3 21 21 H 1.09005 * 109.47024 * 300.83316 * 1 2 3 22 22 H 1.09008 * 109.47120 * 60.83294 * 1 2 3 23 23 H 0.97000 * 119.99747 * 180.02562 * 7 6 4 24 24 H 1.09002 * 109.63717 * 93.28285 * 14 12 2 25 25 H 1.09000 * 109.63403 * 332.67635 * 14 12 2 26 26 H 1.09006 * 109.03138 * 42.55788 * 15 14 12 27 27 H 1.09001 * 109.03069 * 161.46856 * 15 14 12 28 28 H 1.08999 * 108.95861 * 180.74112 * 16 15 14 29 29 H 1.09000 * 108.95032 * 299.39032 * 16 15 14 30 30 H 1.09006 * 108.86367 * 217.91984 * 18 17 16 31 31 H 1.09001 * 108.86506 * 336.43050 * 18 17 16 32 32 H 1.08999 * 109.08111 * 79.81939 * 19 18 17 33 33 H 1.08996 * 109.08381 * 198.87020 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0322 -0.7104 1.2305 5 1 2.6531 -1.5886 1.1313 6 6 1.6992 -0.2394 2.4828 7 7 0.9436 0.8302 2.6034 8 14 2.3213 -1.1205 4.0080 9 1 3.1453 -2.2878 3.6037 10 1 3.1466 -0.1875 4.8165 11 1 1.1660 -1.5867 4.8161 12 6 2.0399 -0.7213 -1.2493 13 1 1.5687 -1.7027 -1.3021 14 6 1.6428 0.0722 -2.4622 15 6 1.3732 -0.9089 -3.6219 16 6 2.6138 -1.3886 -4.2236 17 8 3.4452 -2.0837 -3.2719 18 6 4.2137 -1.2081 -2.4965 19 6 3.5695 -0.9094 -1.1261 20 1 -0.3634 -1.0275 0.0150 21 1 -0.3633 0.5267 0.8825 22 1 -0.3634 0.5009 -0.8974 23 1 0.7096 1.1618 3.4844 24 1 2.4506 0.7506 -2.7368 25 1 0.7390 0.6422 -2.2472 26 1 0.8094 -1.7612 -3.2426 27 1 0.7817 -0.4031 -4.3850 28 1 2.3714 -2.0654 -5.0429 29 1 3.1665 -0.5374 -4.6213 30 1 5.1967 -1.6507 -2.3348 31 1 4.3349 -0.2705 -3.0391 32 1 3.7731 -1.7385 -0.4483 33 1 4.0077 0.0009 -0.7170 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259951594.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:18 Heat of formation + Delta-G solvation = -83.989845 kcal Electronic energy + Delta-G solvation = -13458.912916 eV Core-core repulsion = 11290.202785 eV Total energy + Delta-G solvation = -2168.710131 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.54613 -37.44306 -34.71425 -33.52529 -31.38293 -27.92977 -27.04893 -25.74914 -22.42480 -22.13940 -20.31475 -18.27838 -17.32451 -17.21759 -16.47004 -15.78666 -15.29991 -14.88865 -14.43382 -14.00603 -13.72927 -13.45948 -13.18632 -12.92994 -12.60847 -12.27468 -12.18176 -12.12177 -11.98826 -11.51101 -11.41890 -11.07793 -10.73098 -10.51827 -10.39553 -10.26471 -8.05773 -6.17366 1.37743 1.40121 1.51144 2.44078 3.09841 3.21414 3.87314 4.17098 4.18656 4.29676 4.37884 4.40456 4.64963 4.74407 4.88045 4.88495 4.94809 5.00345 5.07498 5.21541 5.32479 5.34691 5.37565 5.48549 5.59685 5.66087 5.69986 6.06603 6.19030 6.44408 6.47366 6.94789 7.50132 8.99162 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.050014 B = 0.010400 C = 0.009117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 559.712614 B = 2691.726295 C = 3070.389017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.041 3.959 3 H -0.006 1.006 4 C -0.518 4.518 5 H 0.052 0.948 6 C 0.007 3.993 7 N -0.921 5.921 8 Si 0.947 3.053 9 H -0.269 1.269 10 H -0.281 1.281 11 H -0.283 1.283 12 C -0.065 4.065 13 H 0.037 0.963 14 C -0.115 4.115 15 C -0.148 4.148 16 C 0.057 3.943 17 O -0.393 6.393 18 C 0.065 3.935 19 C -0.125 4.125 20 H 0.018 0.982 21 H 0.050 0.950 22 H 0.035 0.965 23 H 0.258 0.742 24 H 0.062 0.938 25 H 0.061 0.939 26 H 0.054 0.946 27 H 0.093 0.907 28 H 0.103 0.897 29 H 0.066 0.934 30 H 0.084 0.916 31 H 0.062 0.938 32 H 0.043 0.957 33 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.409 -2.114 -11.948 12.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.023 3.977 3 H 0.012 0.988 4 C -0.556 4.556 5 H 0.070 0.930 6 C -0.190 4.190 7 N -0.561 5.561 8 Si 0.774 3.226 9 H -0.193 1.193 10 H -0.207 1.207 11 H -0.209 1.209 12 C -0.084 4.084 13 H 0.056 0.944 14 C -0.153 4.153 15 C -0.185 4.185 16 C -0.019 4.019 17 O -0.312 6.312 18 C -0.013 4.013 19 C -0.163 4.163 20 H 0.038 0.962 21 H 0.069 0.931 22 H 0.054 0.946 23 H 0.067 0.933 24 H 0.081 0.919 25 H 0.080 0.920 26 H 0.073 0.927 27 H 0.111 0.889 28 H 0.121 0.879 29 H 0.085 0.915 30 H 0.102 0.898 31 H 0.080 0.920 32 H 0.062 0.938 33 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 3.341 -2.217 -11.801 12.463 hybrid contribution 0.000 0.018 1.455 1.455 sum 3.341 -2.198 -10.346 11.092 Atomic orbital electron populations 1.21713 0.98904 0.98375 0.99558 1.18798 0.92446 0.94042 0.92402 0.98780 1.21657 1.30164 1.11934 0.91883 0.92978 1.25739 0.95631 0.95844 1.01823 1.70037 1.38253 1.24366 1.23486 0.85663 0.78132 0.78808 0.80023 1.19315 1.20670 1.20885 1.20820 0.94843 0.97770 0.94942 0.94431 1.21460 1.01286 0.97883 0.94623 1.21170 0.99289 0.99310 0.98771 1.21723 0.91429 0.97662 0.91049 1.87714 1.58117 1.33904 1.51476 1.22387 0.93855 0.93983 0.91046 1.22495 0.95927 1.00614 0.97278 0.96247 0.93133 0.94607 0.93311 0.91890 0.91993 0.92709 0.88853 0.87904 0.91536 0.89792 0.91991 0.93836 0.92635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.37 8.75 71.98 0.63 -5.74 16 2 C 0.04 2.12 1.75 -11.54 -0.02 2.10 16 3 H -0.01 -0.33 8.14 -2.39 -0.02 -0.35 16 4 C -0.52 -29.09 7.87 25.60 0.20 -28.89 16 5 H 0.05 2.91 6.32 -2.91 -0.02 2.90 16 6 C 0.01 0.41 5.30 84.65 0.45 0.86 16 7 N -0.92 -54.58 11.33 21.45 0.24 -54.33 16 8 Si 0.95 44.92 29.54 68.60 2.03 46.95 16 9 H -0.27 -12.41 7.11 99.48 0.71 -11.71 16 10 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 11 H -0.28 -13.20 7.11 99.48 0.71 -12.50 16 12 C -0.07 -2.72 1.47 -11.12 -0.02 -2.73 16 13 H 0.04 1.68 7.32 -2.39 -0.02 1.66 16 14 C -0.12 -3.87 4.98 30.15 0.15 -3.72 16 15 C -0.15 -3.96 5.52 28.87 0.16 -3.80 16 16 C 0.06 1.37 6.11 69.83 0.43 1.80 16 17 O -0.39 -12.28 10.35 -140.32 -1.45 -13.74 16 18 C 0.06 1.95 6.09 72.44 0.44 2.39 16 19 C -0.13 -4.86 4.79 31.60 0.15 -4.71 16 20 H 0.02 0.92 8.14 -2.39 -0.02 0.90 16 21 H 0.05 2.80 6.09 -2.38 -0.01 2.79 16 22 H 0.04 1.54 6.20 -2.38 -0.01 1.53 16 23 H 0.26 14.54 8.31 -92.71 -0.77 13.77 16 24 H 0.06 1.96 7.07 -2.39 -0.02 1.94 16 25 H 0.06 2.18 5.74 -2.39 -0.01 2.16 16 26 H 0.05 1.63 7.53 -2.38 -0.02 1.62 16 27 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 28 H 0.10 1.99 8.14 -2.39 -0.02 1.97 16 29 H 0.07 1.35 7.35 -2.39 -0.02 1.33 16 30 H 0.08 2.26 8.14 -2.38 -0.02 2.24 16 31 H 0.06 1.61 6.53 -2.39 -0.02 1.59 16 32 H 0.04 1.84 6.88 -2.39 -0.02 1.82 16 33 H 0.05 2.24 7.99 -2.39 -0.02 2.22 16 Total: -1.00 -62.51 249.21 4.46 -58.05 By element: Atomic # 1 Polarization: 4.45 SS G_CDS: 1.07 Total: 5.52 kcal Atomic # 6 Polarization: -45.02 SS G_CDS: 2.57 Total: -42.45 kcal Atomic # 7 Polarization: -54.58 SS G_CDS: 0.24 Total: -54.33 kcal Atomic # 8 Polarization: -12.28 SS G_CDS: -1.45 Total: -13.74 kcal Atomic # 14 Polarization: 44.92 SS G_CDS: 2.03 Total: 46.95 kcal Total: -62.51 4.46 -58.05 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259951594.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.941 kcal (2) G-P(sol) polarization free energy of solvation -62.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.049 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds