Wall clock time and date at job start Mon Mar 30 2020 02:29:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09002 * 109.47112 * 2 1 4 4 C 1.50703 * 109.46887 * 119.99836 * 2 1 3 5 5 H 1.08004 * 119.99614 * 119.99613 * 4 2 1 6 6 C 1.37878 * 120.00284 * 300.00164 * 4 2 1 7 7 N 1.31512 * 120.00083 * 179.97438 * 6 4 2 8 8 Si 1.86798 * 119.99917 * 0.02562 * 6 4 2 9 9 H 1.48497 * 109.47264 * 89.99721 * 8 6 4 10 10 H 1.48505 * 109.47106 * 210.00317 * 8 6 4 11 11 H 1.48502 * 109.46921 * 329.99712 * 8 6 4 12 12 C 1.52995 * 109.47193 * 239.99782 * 2 1 3 13 13 H 1.08996 * 108.96311 * 301.20603 * 12 2 1 14 14 C 1.54196 * 108.90962 * 182.43942 * 12 2 1 15 15 C 1.50631 * 109.06473 * 161.86418 * 14 12 2 16 16 C 1.53822 * 112.46225 * 90.32901 * 15 14 12 17 17 O 1.43991 * 113.41294 * 317.88865 * 16 15 14 18 18 C 1.40394 * 116.50333 * 317.89169 * 17 16 15 19 19 C 1.46290 * 108.97480 * 60.00178 * 12 2 1 20 20 H 1.09002 * 109.47112 * 179.97438 * 1 2 3 21 21 H 1.08995 * 109.47409 * 299.99998 * 1 2 3 22 22 H 1.09001 * 109.46856 * 59.99649 * 1 2 3 23 23 H 0.97001 * 119.99810 * 180.02562 * 7 6 4 24 24 H 1.08998 * 109.54028 * 281.74141 * 14 12 2 25 25 H 1.08997 * 109.54152 * 41.91335 * 14 12 2 26 26 H 1.08999 * 108.88679 * 211.09871 * 15 14 12 27 27 H 1.08998 * 108.88033 * 329.56387 * 15 14 12 28 28 H 1.09004 * 108.69221 * 78.90156 * 16 15 14 29 29 H 1.08994 * 108.69754 * 196.87418 * 16 15 14 30 30 H 1.09000 * 109.68129 * 335.35023 * 18 17 16 31 31 H 1.08996 * 109.54922 * 214.86328 * 18 17 16 32 32 H 1.09002 * 108.93832 * 302.67881 * 19 12 2 33 33 H 1.09001 * 108.93743 * 61.37056 * 19 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 1.2305 5 1 2.6532 -1.5886 1.1314 6 6 1.6992 -0.2394 2.4828 7 7 2.1372 -0.8596 3.5566 8 14 0.6247 1.2790 2.6542 9 1 -0.8028 0.8726 2.6997 10 1 0.9759 1.9951 3.9069 11 1 0.8471 2.1764 1.4921 12 6 2.0401 -0.7213 -1.2492 13 1 1.6546 -1.7408 -1.2517 14 6 3.5807 -0.7677 -1.2054 15 6 4.0682 -1.8293 -2.1563 16 6 4.3248 -1.2794 -3.5698 17 8 3.3072 -0.3665 -4.0219 18 6 1.9780 -0.7208 -3.7411 19 6 1.5465 -0.0233 -2.4363 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3634 0.5138 0.8899 22 1 -0.3633 0.5139 -0.8900 23 1 1.9025 -0.5284 4.4376 24 1 3.9832 0.2006 -1.5027 25 1 3.9097 -1.0042 -0.1935 26 1 4.9951 -2.2517 -1.7685 27 1 3.3202 -2.6199 -2.2158 28 1 5.2847 -0.7629 -3.5747 29 1 4.3777 -2.1162 -4.2660 30 1 1.9040 -1.8015 -3.6198 31 1 1.3339 -0.3975 -4.5588 32 1 0.4578 0.0134 -2.3981 33 1 1.9346 0.9953 -2.4347 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259951595.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:19 Heat of formation + Delta-G solvation = -81.091637 kcal Electronic energy + Delta-G solvation = -13483.882996 eV Core-core repulsion = 11315.298541 eV Total energy + Delta-G solvation = -2168.584455 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.54540 -37.61628 -34.61159 -33.70315 -31.92744 -28.10321 -26.82579 -26.06672 -22.73147 -21.33090 -20.69249 -18.83300 -17.40041 -17.14170 -16.63654 -16.09914 -15.09777 -14.92659 -14.69861 -14.19108 -13.99017 -13.79333 -13.32377 -13.06724 -12.70113 -12.45788 -12.18112 -12.03120 -11.67982 -11.53910 -11.27230 -11.17149 -10.88661 -10.69914 -10.61063 -10.21082 -8.25587 -6.26199 1.29707 1.35725 1.45952 2.34770 3.02299 3.10625 3.84199 3.98570 4.07151 4.23866 4.27658 4.46985 4.57714 4.64943 4.69440 4.74760 4.76612 4.97776 4.98505 5.12770 5.16950 5.22875 5.30997 5.36292 5.45360 5.55764 5.63971 5.81402 5.86268 6.39111 6.54633 6.80496 7.38044 8.90920 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.052625 B = 0.010821 C = 0.009563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 531.942379 B = 2586.845737 C = 2927.339126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.006 3.994 3 H 0.015 0.985 4 C -0.501 4.501 5 H 0.040 0.960 6 C 0.005 3.995 7 N -0.954 5.954 8 Si 0.949 3.051 9 H -0.270 1.270 10 H -0.304 1.304 11 H -0.251 1.251 12 C -0.062 4.062 13 H 0.050 0.950 14 C -0.107 4.107 15 C -0.148 4.148 16 C 0.066 3.934 17 O -0.403 6.403 18 C 0.070 3.930 19 C -0.144 4.144 20 H 0.049 0.951 21 H 0.023 0.977 22 H 0.067 0.933 23 H 0.262 0.738 24 H 0.052 0.948 25 H 0.049 0.951 26 H 0.077 0.923 27 H 0.060 0.940 28 H 0.092 0.908 29 H 0.066 0.934 30 H 0.056 0.944 31 H 0.101 0.899 32 H 0.080 0.920 33 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.404 0.676 -14.565 14.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.013 4.013 3 H 0.033 0.967 4 C -0.539 4.539 5 H 0.059 0.941 6 C -0.190 4.190 7 N -0.595 5.595 8 Si 0.777 3.223 9 H -0.196 1.196 10 H -0.232 1.232 11 H -0.175 1.175 12 C -0.081 4.081 13 H 0.068 0.932 14 C -0.144 4.144 15 C -0.186 4.186 16 C -0.010 4.010 17 O -0.323 6.323 18 C -0.007 4.007 19 C -0.181 4.181 20 H 0.069 0.931 21 H 0.042 0.958 22 H 0.086 0.914 23 H 0.071 0.929 24 H 0.070 0.930 25 H 0.068 0.932 26 H 0.096 0.904 27 H 0.079 0.921 28 H 0.110 0.890 29 H 0.084 0.916 30 H 0.074 0.926 31 H 0.119 0.881 32 H 0.098 0.902 33 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -0.355 0.829 -14.492 14.520 hybrid contribution -0.392 0.191 1.241 1.316 sum -0.748 1.020 -13.251 13.311 Atomic orbital electron populations 1.22177 0.98010 1.00891 0.99421 1.19253 0.92724 0.95553 0.93732 0.96681 1.21419 1.29938 1.12038 0.90546 0.94130 1.25870 0.97581 0.99835 0.95751 1.70053 1.48349 1.42685 0.98449 0.85841 0.79146 0.80474 0.76804 1.19636 1.23203 1.17547 1.19965 0.95095 0.98752 0.94240 0.93173 1.21255 0.95686 0.98634 0.98845 1.21908 1.02257 0.98699 0.95693 1.23007 0.91019 0.93502 0.93459 1.87404 1.15622 1.50247 1.79000 1.22429 0.83011 0.98916 0.96300 1.21287 1.01737 1.00158 0.94959 0.93143 0.95833 0.91400 0.92905 0.92955 0.93244 0.90425 0.92101 0.88984 0.91572 0.92566 0.88113 0.90176 0.92589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.10 8.27 71.98 0.60 -5.51 16 2 C 0.01 0.28 1.46 -11.54 -0.02 0.27 16 3 H 0.02 0.72 7.20 -2.39 -0.02 0.71 16 4 C -0.50 -28.32 8.13 25.60 0.21 -28.11 16 5 H 0.04 2.52 6.93 -2.91 -0.02 2.50 16 6 C 0.01 0.32 5.45 84.66 0.46 0.78 16 7 N -0.95 -60.42 13.96 21.45 0.30 -60.12 16 8 Si 0.95 46.26 24.37 68.60 1.67 47.93 16 9 H -0.27 -12.56 6.87 99.48 0.68 -11.88 16 10 H -0.30 -14.87 7.11 99.48 0.71 -14.16 16 11 H -0.25 -11.48 6.53 99.48 0.65 -10.83 16 12 C -0.06 -2.36 1.35 -12.46 -0.02 -2.38 16 13 H 0.05 1.95 7.59 -2.39 -0.02 1.93 16 14 C -0.11 -4.01 4.84 30.23 0.15 -3.86 16 15 C -0.15 -4.31 5.32 30.10 0.16 -4.15 16 16 C 0.07 1.63 6.67 72.26 0.48 2.11 16 17 O -0.40 -11.45 10.18 -144.00 -1.47 -12.91 16 18 C 0.07 1.81 6.37 72.36 0.46 2.27 16 19 C -0.14 -4.46 4.47 28.91 0.13 -4.33 16 20 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 21 H 0.02 1.02 3.27 -2.39 -0.01 1.01 16 22 H 0.07 2.29 6.33 -2.39 -0.02 2.27 16 23 H 0.26 15.67 8.31 -92.71 -0.77 14.90 16 24 H 0.05 1.95 7.82 -2.39 -0.02 1.93 16 25 H 0.05 2.22 6.04 -2.39 -0.01 2.20 16 26 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 27 H 0.06 1.76 6.83 -2.39 -0.02 1.74 16 28 H 0.09 2.06 8.14 -2.38 -0.02 2.04 16 29 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 30 H 0.06 1.37 6.97 -2.39 -0.02 1.35 16 31 H 0.10 2.10 8.14 -2.39 -0.02 2.08 16 32 H 0.08 2.27 6.05 -2.39 -0.01 2.25 16 33 H 0.06 1.84 8.13 -2.39 -0.02 1.82 16 Total: -1.00 -64.84 243.54 4.11 -60.73 By element: Atomic # 1 Polarization: 6.28 SS G_CDS: 0.99 Total: 7.27 kcal Atomic # 6 Polarization: -45.51 SS G_CDS: 2.61 Total: -42.90 kcal Atomic # 7 Polarization: -60.42 SS G_CDS: 0.30 Total: -60.12 kcal Atomic # 8 Polarization: -11.45 SS G_CDS: -1.47 Total: -12.91 kcal Atomic # 14 Polarization: 46.26 SS G_CDS: 1.67 Total: 47.93 kcal Total: -64.84 4.11 -60.73 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259951595.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.365 kcal (2) G-P(sol) polarization free energy of solvation -64.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.727 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds