Wall clock time and date at job start Mon Mar 30 2020 02:29:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08992 * 109.47138 * 2 1 4 4 C 1.50695 * 109.47381 * 239.99764 * 2 1 3 5 5 H 1.08004 * 120.00546 * 240.27913 * 4 2 1 6 6 C 1.37885 * 119.99721 * 60.00164 * 4 2 1 7 7 N 1.31514 * 120.00035 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99853 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.46986 * 90.00256 * 8 6 4 10 10 H 1.48496 * 109.47029 * 210.00273 * 8 6 4 11 11 H 1.48499 * 109.47352 * 330.00102 * 8 6 4 12 12 C 1.53004 * 109.46978 * 120.00288 * 2 1 3 13 13 H 1.08997 * 109.63471 * 60.39734 * 12 2 1 14 14 C 1.50284 * 109.63530 * 181.00853 * 12 2 1 15 15 C 1.54604 * 112.95539 * 211.78455 * 14 12 2 16 16 C 1.54352 * 111.45046 * 318.99502 * 15 14 12 17 17 O 1.39963 * 112.57018 * 319.31694 * 16 15 14 18 18 C 1.44225 * 112.36825 * 97.12083 * 17 16 15 19 19 C 1.45985 * 112.10713 * 277.40723 * 18 17 16 20 20 H 1.08996 * 109.46841 * 60.00367 * 1 2 3 21 21 H 1.09005 * 109.47057 * 179.97438 * 1 2 3 22 22 H 1.08996 * 109.47481 * 299.99642 * 1 2 3 23 23 H 0.97000 * 119.99706 * 179.97438 * 7 6 4 24 24 H 1.09002 * 108.78411 * 332.67403 * 14 12 2 25 25 H 1.08999 * 108.79217 * 90.88004 * 14 12 2 26 26 H 1.09000 * 109.08647 * 198.49253 * 15 14 12 27 27 H 1.08999 * 109.03268 * 79.46619 * 15 14 12 28 28 H 1.08998 * 108.86448 * 198.51703 * 16 15 14 29 29 H 1.09004 * 108.86397 * 80.11527 * 16 15 14 30 30 H 1.09007 * 108.95431 * 156.72987 * 18 17 16 31 31 H 1.09003 * 108.95319 * 38.08663 * 18 17 16 32 32 H 1.09003 * 109.02530 * 299.49015 * 19 18 17 33 33 H 1.08994 * 108.96891 * 180.60318 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6496 -1.5912 -1.1313 6 6 1.6993 -0.2393 -2.4827 7 7 0.9436 0.8302 -2.6034 8 14 2.3226 -1.1195 -4.0079 9 1 1.3449 -2.1615 -4.4124 10 1 2.4875 -0.1402 -5.1119 11 1 3.6310 -1.7566 -3.7119 12 6 2.0400 -0.7213 1.2492 13 1 1.6839 -1.7515 1.2483 14 6 3.5426 -0.7020 1.2655 15 6 4.1545 -1.9526 1.9377 16 6 3.3677 -2.3552 3.2032 17 8 2.9785 -1.2496 3.9681 18 6 1.6213 -0.8445 3.6963 19 6 1.5277 0.0030 2.5114 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3634 0.5137 0.8900 23 1 0.7097 1.1618 -3.4844 24 1 3.9040 -0.6431 0.2389 25 1 3.8765 0.1849 1.8041 26 1 5.1875 -1.7398 2.2131 27 1 4.1380 -2.7808 1.2293 28 1 3.9934 -3.0047 3.8154 29 1 2.4771 -2.9076 2.9035 30 1 1.2369 -0.2952 4.5558 31 1 1.0099 -1.7341 3.5446 32 1 2.1218 0.9030 2.6704 33 1 0.4863 0.2869 2.3602 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259951597.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:21 Heat of formation + Delta-G solvation = -84.206270 kcal Electronic energy + Delta-G solvation = -13477.026405 eV Core-core repulsion = 11308.306889 eV Total energy + Delta-G solvation = -2168.719516 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.57883 -37.39628 -34.55643 -33.57839 -31.48447 -28.15826 -26.90743 -25.67024 -22.83094 -21.66295 -20.44053 -18.31716 -17.36763 -17.09910 -16.38112 -16.00872 -15.31410 -14.63875 -14.54580 -14.01406 -13.88395 -13.65938 -12.99574 -12.87605 -12.63902 -12.22810 -12.15418 -12.05670 -11.94958 -11.59150 -11.36188 -11.09126 -10.73557 -10.57201 -10.36599 -10.35409 -8.05461 -6.17269 1.40067 1.41246 1.50679 2.44247 3.05863 3.21858 3.88986 4.11830 4.17840 4.28273 4.36967 4.46613 4.64739 4.73537 4.78931 4.86333 4.98902 5.05097 5.06341 5.23021 5.25373 5.34053 5.45297 5.46599 5.58622 5.66355 5.68964 6.05743 6.22011 6.41066 6.44243 6.94410 7.49775 8.99293 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.047837 B = 0.010718 C = 0.009236 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 585.177202 B = 2611.888493 C = 3030.771660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.046 3.954 3 H -0.011 1.011 4 C -0.518 4.518 5 H 0.054 0.946 6 C 0.008 3.992 7 N -0.921 5.921 8 Si 0.948 3.052 9 H -0.276 1.276 10 H -0.287 1.287 11 H -0.268 1.268 12 C -0.065 4.065 13 H 0.053 0.947 14 C -0.107 4.107 15 C -0.142 4.142 16 C 0.061 3.939 17 O -0.388 6.388 18 C 0.065 3.935 19 C -0.152 4.152 20 H 0.049 0.951 21 H 0.025 0.975 22 H 0.036 0.964 23 H 0.258 0.742 24 H 0.048 0.952 25 H 0.041 0.959 26 H 0.067 0.933 27 H 0.066 0.934 28 H 0.095 0.905 29 H 0.052 0.948 30 H 0.102 0.898 31 H 0.060 0.940 32 H 0.053 0.947 33 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.127 -5.288 9.957 11.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.027 3.973 3 H 0.007 0.993 4 C -0.556 4.556 5 H 0.072 0.928 6 C -0.190 4.190 7 N -0.561 5.561 8 Si 0.774 3.226 9 H -0.202 1.202 10 H -0.213 1.213 11 H -0.193 1.193 12 C -0.083 4.083 13 H 0.071 0.929 14 C -0.144 4.144 15 C -0.180 4.180 16 C -0.017 4.017 17 O -0.307 6.307 18 C -0.011 4.011 19 C -0.189 4.189 20 H 0.068 0.932 21 H 0.044 0.956 22 H 0.055 0.945 23 H 0.067 0.933 24 H 0.067 0.933 25 H 0.060 0.940 26 H 0.086 0.914 27 H 0.085 0.915 28 H 0.113 0.887 29 H 0.070 0.930 30 H 0.120 0.880 31 H 0.078 0.922 32 H 0.072 0.928 33 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 2.177 -5.084 9.961 11.393 hybrid contribution 0.053 -0.134 -1.535 1.542 sum 2.230 -5.218 8.426 10.159 Atomic orbital electron populations 1.21726 0.98614 0.98677 0.99697 1.18670 0.92664 0.93928 0.92010 0.99302 1.21538 1.30420 1.11894 0.91737 0.92787 1.25731 0.95602 0.95809 1.01842 1.70033 1.38158 1.24327 1.23581 0.85705 0.78941 0.78368 0.79558 1.20217 1.21264 1.19295 1.20766 0.94942 0.98428 0.94189 0.92854 1.21306 0.95768 0.97549 0.99820 1.22601 1.00000 0.97993 0.97397 1.22380 0.99064 0.88062 0.92188 1.87688 1.30917 1.49960 1.62128 1.21628 0.82719 0.98894 0.97861 1.21337 1.02385 0.99733 0.95436 0.93200 0.95613 0.94516 0.93298 0.93307 0.94008 0.91425 0.91520 0.88729 0.92978 0.87952 0.92203 0.92803 0.90362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.24 8.68 71.98 0.62 -5.61 16 2 C 0.05 2.29 1.86 -11.54 -0.02 2.27 16 3 H -0.01 -0.63 8.14 -2.39 -0.02 -0.65 16 4 C -0.52 -28.37 7.38 25.60 0.19 -28.18 16 5 H 0.05 2.90 7.18 -2.91 -0.02 2.88 16 6 C 0.01 0.44 5.30 84.66 0.45 0.89 16 7 N -0.92 -54.03 11.32 21.45 0.24 -53.79 16 8 Si 0.95 44.05 29.54 68.60 2.03 46.07 16 9 H -0.28 -12.51 7.11 99.48 0.71 -11.81 16 10 H -0.29 -13.20 7.11 99.48 0.71 -12.50 16 11 H -0.27 -12.07 7.11 99.48 0.71 -11.37 16 12 C -0.06 -2.62 1.40 -11.24 -0.02 -2.63 16 13 H 0.05 2.15 7.10 -2.39 -0.02 2.13 16 14 C -0.11 -4.16 4.80 30.26 0.15 -4.02 16 15 C -0.14 -4.40 6.27 31.60 0.20 -4.20 16 16 C 0.06 1.65 6.09 72.44 0.44 2.09 16 17 O -0.39 -11.72 10.35 -140.38 -1.45 -13.18 16 18 C 0.06 1.79 6.11 69.83 0.43 2.22 16 19 C -0.15 -5.13 4.86 28.87 0.14 -4.99 16 20 H 0.05 2.71 6.07 -2.39 -0.01 2.69 16 21 H 0.02 1.17 8.14 -2.38 -0.02 1.15 16 22 H 0.04 1.53 6.09 -2.39 -0.01 1.51 16 23 H 0.26 14.46 8.31 -92.71 -0.77 13.69 16 24 H 0.05 2.17 6.27 -2.39 -0.01 2.15 16 25 H 0.04 1.63 7.34 -2.39 -0.02 1.61 16 26 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 27 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 28 H 0.09 2.09 8.14 -2.39 -0.02 2.07 16 29 H 0.05 1.37 6.54 -2.38 -0.02 1.36 16 30 H 0.10 2.34 8.14 -2.38 -0.02 2.32 16 31 H 0.06 1.52 7.35 -2.39 -0.02 1.51 16 32 H 0.05 1.90 7.53 -2.39 -0.02 1.88 16 33 H 0.08 2.60 5.70 -2.39 -0.01 2.59 16 Total: -1.00 -60.41 249.60 4.46 -55.95 By element: Atomic # 1 Polarization: 6.04 SS G_CDS: 1.07 Total: 7.11 kcal Atomic # 6 Polarization: -44.75 SS G_CDS: 2.58 Total: -42.17 kcal Atomic # 7 Polarization: -54.03 SS G_CDS: 0.24 Total: -53.79 kcal Atomic # 8 Polarization: -11.72 SS G_CDS: -1.45 Total: -13.18 kcal Atomic # 14 Polarization: 44.05 SS G_CDS: 2.03 Total: 46.07 kcal Total: -60.41 4.46 -55.95 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259951597.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.254 kcal (2) G-P(sol) polarization free energy of solvation -60.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.952 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds