Wall clock time and date at job start Mon Mar 30 2020 02:33:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86806 * 120.00170 * 2 1 4 4 H 1.48493 * 109.47302 * 270.00187 * 3 2 1 5 5 H 1.48501 * 109.46770 * 30.00424 * 3 2 1 6 6 H 1.48502 * 109.47276 * 149.99735 * 3 2 1 7 7 C 1.37875 * 120.00153 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00042 * 0.02562 * 7 2 1 9 9 C 1.50696 * 120.00248 * 179.97438 * 7 2 1 10 10 C 1.53007 * 109.47405 * 180.02562 * 9 7 2 11 11 H 1.08994 * 109.47017 * 54.99774 * 10 9 7 12 12 N 1.46904 * 109.46857 * 295.00295 * 10 9 7 13 13 C 1.52991 * 109.47384 * 175.00311 * 10 9 7 14 14 H 1.09011 * 109.53706 * 304.90105 * 13 10 9 15 15 C 1.53123 * 109.50610 * 184.80469 * 13 10 9 16 16 C 1.53114 * 109.16198 * 182.40446 * 15 13 10 17 17 C 1.53032 * 109.28141 * 57.65126 * 16 15 13 18 18 N 1.46844 * 109.52527 * 300.82107 * 17 16 15 19 19 C 1.46846 * 111.19783 * 61.73901 * 18 17 16 20 20 H 0.96998 * 119.99569 * 0.02562 * 1 2 3 21 21 H 1.09000 * 109.47209 * 60.00207 * 9 7 2 22 22 H 1.08998 * 109.47501 * 300.00313 * 9 7 2 23 23 H 1.00903 * 110.99658 * 176.04425 * 12 10 9 24 24 H 1.00896 * 110.99845 * 299.99441 * 12 10 9 25 25 H 1.09000 * 109.52219 * 62.49616 * 15 13 10 26 26 H 1.08998 * 109.51778 * 302.31121 * 15 13 10 27 27 H 1.09000 * 109.50493 * 297.71120 * 16 15 13 28 28 H 1.09000 * 109.53426 * 177.61523 * 16 15 13 29 29 H 1.09000 * 109.46311 * 180.80335 * 17 16 15 30 30 H 1.08998 * 109.46309 * 60.83577 * 17 16 15 31 31 H 1.00904 * 111.00140 * 185.83454 * 18 17 16 32 32 H 1.09008 * 109.46456 * 58.27625 * 19 18 17 33 33 H 1.09003 * 109.46474 * 178.24130 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0465 -1.4000 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4402 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5115 -1.1940 0.0000 10 6 4.0216 -2.6366 0.0001 11 1 3.5866 -3.1758 -0.8414 12 7 3.6334 -3.2931 1.2556 13 6 5.5463 -2.6385 -0.1261 14 1 5.8394 -2.0760 -1.0128 15 6 6.0476 -4.0803 -0.2467 16 6 7.5773 -4.0767 -0.3120 17 6 8.1348 -3.3880 0.9356 18 7 7.6268 -2.0120 1.0050 19 6 6.1627 -1.9914 1.1162 20 1 -0.4849 0.8401 -0.0004 21 1 3.8752 -0.6797 0.8895 22 1 3.8746 -0.6808 -0.8905 23 1 3.9024 -4.2656 1.2533 24 1 4.0245 -2.8116 2.0513 25 1 5.6452 -4.5312 -1.1538 26 1 5.7213 -4.6530 0.6214 27 1 7.9023 -3.5369 -1.2015 28 1 7.9426 -5.1027 -0.3553 29 1 9.2235 -3.3711 0.8853 30 1 7.8209 -3.9362 1.8239 31 1 8.0544 -1.5066 1.7666 32 1 5.8580 -2.5462 2.0036 33 1 5.8190 -0.9602 1.1970 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259974926.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:52 Heat of formation + Delta-G solvation = -39.752683 kcal Electronic energy + Delta-G solvation = -13201.192411 eV Core-core repulsion = 11066.693299 eV Total energy + Delta-G solvation = -2134.499112 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.26425 -36.75022 -34.54561 -32.81325 -30.78326 -30.77561 -26.21383 -24.81708 -23.61639 -21.32458 -20.06739 -18.86232 -17.41272 -16.93072 -16.24240 -15.60069 -15.42545 -15.26867 -14.74920 -14.47571 -14.11165 -13.99741 -13.51199 -13.30995 -12.66271 -12.35166 -12.16291 -11.92640 -11.73503 -11.66457 -11.38871 -11.18951 -10.91678 -10.69124 -9.46217 -9.17759 -8.19217 -6.18868 1.36688 1.37898 1.49230 2.40803 3.14653 3.25945 3.78916 3.89540 3.93576 4.01749 4.22247 4.42033 4.44845 4.60388 4.72746 4.73678 4.80614 4.93228 4.99450 5.11311 5.16337 5.22174 5.33719 5.44692 5.59504 5.73437 6.06516 6.39487 6.49819 6.58008 6.83792 6.91226 7.42270 8.98355 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.052536 B = 0.009387 C = 0.008512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 532.843866 B = 2982.091190 C = 3288.810987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.958 5.958 2 C -0.005 4.005 3 Si 0.947 3.053 4 H -0.270 1.270 5 H -0.288 1.288 6 H -0.248 1.248 7 C -0.497 4.497 8 H 0.034 0.966 9 C -0.002 4.002 10 C 0.119 3.881 11 H 0.056 0.944 12 N -0.838 5.838 13 C -0.113 4.113 14 H 0.064 0.936 15 C -0.114 4.114 16 C -0.114 4.114 17 C 0.057 3.943 18 N -0.697 5.697 19 C 0.066 3.934 20 H 0.262 0.738 21 H 0.019 0.981 22 H 0.014 0.986 23 H 0.338 0.662 24 H 0.337 0.663 25 H 0.063 0.937 26 H 0.062 0.938 27 H 0.061 0.939 28 H 0.084 0.916 29 H 0.088 0.912 30 H 0.031 0.969 31 H 0.350 0.650 32 H 0.033 0.967 33 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.394 -6.245 2.381 19.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.601 5.601 2 C -0.200 4.200 3 Si 0.772 3.228 4 H -0.196 1.196 5 H -0.214 1.214 6 H -0.172 1.172 7 C -0.535 4.535 8 H 0.052 0.948 9 C -0.040 4.040 10 C 0.007 3.993 11 H 0.074 0.926 12 N -0.369 5.369 13 C -0.134 4.134 14 H 0.083 0.917 15 C -0.152 4.152 16 C -0.151 4.151 17 C -0.072 4.072 18 N -0.329 5.329 19 C -0.064 4.064 20 H 0.070 0.930 21 H 0.037 0.963 22 H 0.033 0.967 23 H 0.151 0.849 24 H 0.151 0.849 25 H 0.081 0.919 26 H 0.081 0.919 27 H 0.080 0.920 28 H 0.102 0.898 29 H 0.107 0.893 30 H 0.049 0.951 31 H 0.169 0.831 32 H 0.051 0.949 33 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 17.506 -5.884 1.504 18.530 hybrid contribution 0.438 0.435 0.930 1.116 sum 17.944 -5.449 2.434 18.910 Atomic orbital electron populations 1.70089 1.08226 1.27563 1.54198 1.26000 0.95577 1.03214 0.95200 0.85707 0.79415 0.78847 0.78873 1.19588 1.21384 1.17190 1.21363 0.91829 0.92758 1.47573 0.94792 1.19573 0.94297 0.94129 0.95972 1.21155 0.90891 0.95172 0.92065 0.92598 1.58647 1.68436 1.05974 1.03876 1.21911 0.95705 0.97190 0.98623 0.91748 1.21619 0.96537 0.95143 1.01901 1.21575 0.94424 1.00858 0.98293 1.21992 1.00115 0.88079 0.97046 1.60229 1.05330 1.15956 1.51387 1.21873 0.88007 1.00190 0.96307 0.92971 0.96280 0.96743 0.84854 0.84928 0.91869 0.91925 0.92020 0.89789 0.89321 0.95051 0.83131 0.94873 0.92036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -62.38 13.96 21.45 0.30 -62.08 16 2 C -0.01 -0.31 5.47 84.65 0.46 0.16 16 3 Si 0.95 45.88 27.47 68.60 1.88 47.76 16 4 H -0.27 -12.65 7.11 99.48 0.71 -11.95 16 5 H -0.29 -13.75 7.11 99.48 0.71 -13.04 16 6 H -0.25 -11.11 6.54 99.48 0.65 -10.46 16 7 C -0.50 -29.44 9.39 25.60 0.24 -29.20 16 8 H 0.03 2.25 7.99 -2.91 -0.02 2.23 16 9 C 0.00 -0.10 3.32 29.85 0.10 0.00 16 10 C 0.12 4.60 2.52 44.91 0.11 4.71 16 11 H 0.06 2.33 8.14 -2.39 -0.02 2.31 16 12 N -0.84 -30.24 8.76 -168.68 -1.48 -31.72 16 13 C -0.11 -3.43 2.18 -10.74 -0.02 -3.46 16 14 H 0.06 2.13 8.14 -2.38 -0.02 2.11 16 15 C -0.11 -2.76 5.10 30.67 0.16 -2.60 16 16 C -0.11 -2.27 6.09 30.64 0.19 -2.08 16 17 C 0.06 1.08 6.55 86.32 0.57 1.64 16 18 N -0.70 -16.07 6.85 -514.02 -3.52 -19.59 16 19 C 0.07 1.83 5.13 86.33 0.44 2.27 16 20 H 0.26 15.93 8.31 -92.71 -0.77 15.16 16 21 H 0.02 0.89 5.89 -2.39 -0.01 0.87 16 22 H 0.01 0.68 7.57 -2.39 -0.02 0.66 16 23 H 0.34 10.09 7.50 -89.69 -0.67 9.42 16 24 H 0.34 11.38 7.02 -89.70 -0.63 10.75 16 25 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 26 H 0.06 1.42 6.77 -2.39 -0.02 1.41 16 27 H 0.06 1.33 8.14 -2.39 -0.02 1.32 16 28 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 29 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 30 H 0.03 0.57 8.14 -2.39 -0.02 0.55 16 31 H 0.35 6.74 8.90 -89.69 -0.80 5.95 16 32 H 0.03 0.88 6.56 -2.38 -0.02 0.86 16 33 H 0.06 1.95 6.72 -2.39 -0.02 1.93 16 Total: -1.00 -68.32 253.76 -1.61 -69.94 By element: Atomic # 1 Polarization: 25.29 SS G_CDS: -1.05 Total: 24.25 kcal Atomic # 6 Polarization: -30.80 SS G_CDS: 2.24 Total: -28.56 kcal Atomic # 7 Polarization: -108.69 SS G_CDS: -4.70 Total: -113.39 kcal Atomic # 14 Polarization: 45.88 SS G_CDS: 1.88 Total: 47.76 kcal Total: -68.32 -1.61 -69.94 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259974926.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.186 kcal (2) G-P(sol) polarization free energy of solvation -68.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.939 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds