Wall clock time and date at job start Mon Mar 30 2020 02:33:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86798 * 119.99772 * 2 1 4 4 H 1.48506 * 109.47297 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47261 * 60.00248 * 3 2 1 6 6 H 1.48500 * 109.47454 * 300.00241 * 3 2 1 7 7 C 1.37875 * 120.00380 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00559 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99838 * 359.97438 * 7 2 1 10 10 C 1.53002 * 109.47207 * 180.02562 * 9 7 2 11 11 H 1.08994 * 109.46988 * 305.00182 * 10 9 7 12 12 N 1.46899 * 109.46742 * 64.99909 * 10 9 7 13 13 C 1.52995 * 109.47002 * 184.99843 * 10 9 7 14 14 H 1.09001 * 109.50288 * 59.92185 * 13 10 9 15 15 C 1.53120 * 109.50151 * 180.02562 * 13 10 9 16 16 C 1.53121 * 109.15859 * 177.59789 * 15 13 10 17 17 C 1.53035 * 109.27940 * 302.33824 * 16 15 13 18 18 N 1.46853 * 109.51782 * 59.18524 * 17 16 15 19 19 C 1.46841 * 111.19652 * 298.25559 * 18 17 16 20 20 H 0.97001 * 119.99667 * 180.02562 * 1 2 3 21 21 H 1.09005 * 109.46894 * 300.00433 * 9 7 2 22 22 H 1.08998 * 109.47107 * 60.00164 * 9 7 2 23 23 H 1.00908 * 111.00177 * 60.00491 * 12 10 9 24 24 H 1.00906 * 110.99875 * 183.95255 * 12 10 9 25 25 H 1.08999 * 109.52458 * 297.50087 * 15 13 10 26 26 H 1.08996 * 109.52717 * 57.62543 * 15 13 10 27 27 H 1.08993 * 109.50735 * 62.28688 * 16 15 13 28 28 H 1.09007 * 109.49865 * 182.36170 * 16 15 13 29 29 H 1.08999 * 109.46286 * 179.19682 * 17 16 15 30 30 H 1.08997 * 109.46495 * 299.17939 * 17 16 15 31 31 H 1.00900 * 110.99824 * 174.15958 * 18 17 16 32 32 H 1.09002 * 109.46500 * 301.72413 * 19 18 17 33 33 H 1.09000 * 109.46400 * 181.76443 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3965 1.2125 6 1 1.8903 2.3965 -1.2124 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 1 2.9295 -3.5551 -0.8423 12 7 3.0084 -3.6538 1.2547 13 6 1.4846 -4.9835 -0.1262 14 1 0.9171 -4.9895 -1.0568 15 6 2.4790 -6.1479 -0.1256 16 6 1.7065 -7.4683 -0.1912 17 6 0.7425 -7.5492 0.9946 18 7 -0.1882 -6.4142 0.9486 19 6 0.5269 -5.1364 1.0577 20 1 -0.4850 -0.8401 0.0004 21 1 0.6247 -2.5570 0.8897 22 1 0.6242 -2.5567 -0.8903 23 1 2.3962 -3.7517 2.0508 24 1 3.7162 -4.3730 1.2524 25 1 3.1356 -6.0666 -0.9919 26 1 3.0744 -6.1180 0.7868 27 1 1.1424 -7.5141 -1.1226 28 1 2.4073 -8.3023 -0.1488 29 1 0.1808 -8.4819 0.9430 30 1 1.3084 -7.5171 1.9256 31 1 -0.8939 -6.4960 1.6651 32 1 1.0938 -5.1157 1.9884 33 1 -0.1914 -4.3166 1.0520 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259974933.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:54 Heat of formation + Delta-G solvation = -22.657994 kcal Electronic energy + Delta-G solvation = -13188.758515 eV Core-core repulsion = 11055.000684 eV Total energy + Delta-G solvation = -2133.757831 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.03662 -35.34900 -32.72361 -31.66166 -29.53777 -27.91274 -24.23858 -23.67352 -22.35328 -20.24249 -18.71240 -16.82060 -16.21344 -15.35142 -14.44932 -14.35860 -13.89306 -13.63540 -13.40960 -13.03911 -12.92509 -12.53887 -11.57504 -11.39298 -11.02891 -10.83241 -10.58478 -10.43593 -10.41110 -10.13829 -10.00070 -9.36008 -8.49081 -8.35575 -8.18527 -7.75093 -6.19352 -3.84566 3.53236 3.57385 3.72025 4.28833 4.67103 4.90307 4.97812 5.05782 5.28166 5.38615 5.49027 5.58725 5.61310 5.66999 5.80506 5.93987 6.03472 6.08395 6.21123 6.29680 6.51874 6.59172 6.86600 7.11238 7.33927 7.43511 7.54437 8.00165 8.18561 8.43152 8.70807 9.07229 9.84373 11.21032 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.067012 B = 0.008197 C = 0.007713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 417.737822 B = 3415.098847 C = 3629.535118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C 0.006 3.994 3 Si 1.074 2.926 4 H -0.290 1.290 5 H -0.290 1.290 6 H -0.290 1.290 7 C -0.573 4.573 8 H 0.055 0.945 9 C 0.017 3.983 10 C 0.109 3.891 11 H 0.069 0.931 12 N -0.825 5.825 13 C -0.121 4.121 14 H 0.076 0.924 15 C -0.118 4.118 16 C -0.116 4.116 17 C 0.058 3.942 18 N -0.691 5.691 19 C 0.063 3.937 20 H 0.266 0.734 21 H 0.007 0.993 22 H 0.008 0.992 23 H 0.330 0.670 24 H 0.318 0.682 25 H 0.062 0.938 26 H 0.054 0.946 27 H 0.068 0.932 28 H 0.060 0.940 29 H 0.068 0.932 30 H 0.024 0.976 31 H 0.339 0.661 32 H 0.024 0.976 33 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.715 -13.847 2.024 14.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.196 4.196 3 Si 0.904 3.096 4 H -0.216 1.216 5 H -0.217 1.217 6 H -0.217 1.217 7 C -0.612 4.612 8 H 0.073 0.927 9 C -0.020 4.020 10 C -0.003 4.003 11 H 0.087 0.913 12 N -0.354 5.354 13 C -0.142 4.142 14 H 0.094 0.906 15 C -0.156 4.156 16 C -0.154 4.154 17 C -0.071 4.071 18 N -0.321 5.321 19 C -0.066 4.066 20 H 0.076 0.924 21 H 0.025 0.975 22 H 0.026 0.974 23 H 0.143 0.857 24 H 0.130 0.870 25 H 0.080 0.920 26 H 0.073 0.927 27 H 0.087 0.913 28 H 0.079 0.921 29 H 0.087 0.913 30 H 0.042 0.958 31 H 0.156 0.844 32 H 0.042 0.958 33 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 2.745 -11.431 1.130 11.811 hybrid contribution 0.010 -2.710 1.112 2.929 sum 2.756 -14.141 2.241 14.580 Atomic orbital electron populations 1.70735 1.06894 1.30284 1.48290 1.25802 0.96595 1.02678 0.94495 0.83474 0.74545 0.75014 0.76602 1.21603 1.21665 1.21715 1.22049 0.94684 0.91276 1.53172 0.92710 1.19284 0.93770 0.93232 0.95697 1.21504 0.94938 0.92159 0.91694 0.91295 1.58808 1.18066 1.54198 1.04281 1.22095 0.96430 0.96610 0.99073 0.90601 1.21659 0.97865 0.94672 1.01386 1.21568 0.97550 0.97344 0.98919 1.21893 0.94307 0.93935 0.96976 1.60283 1.15608 1.02158 1.54080 1.22024 0.96802 0.91117 0.96620 0.92403 0.97513 0.97355 0.85687 0.86990 0.91960 0.92731 0.91311 0.92142 0.91327 0.95761 0.84407 0.95763 0.89864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -29.00 13.65 55.43 0.76 -28.25 16 2 C 0.01 0.18 5.46 -17.82 -0.10 0.08 16 3 Si 1.07 26.52 29.90 -169.99 -5.08 21.43 16 4 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 5 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 6 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 7 C -0.57 -16.67 8.84 -34.44 -0.30 -16.97 16 8 H 0.05 1.62 7.74 -52.49 -0.41 1.22 16 9 C 0.02 0.44 3.43 -27.88 -0.10 0.34 16 10 C 0.11 2.23 2.57 -67.71 -0.17 2.05 16 11 H 0.07 1.49 8.14 -51.93 -0.42 1.06 16 12 N -0.83 -15.64 8.77 -4.67 -0.04 -15.68 16 13 C -0.12 -2.05 2.23 -90.54 -0.20 -2.25 16 14 H 0.08 1.40 8.14 -51.93 -0.42 0.98 16 15 C -0.12 -1.64 5.01 -26.61 -0.13 -1.78 16 16 C -0.12 -1.42 6.09 -26.65 -0.16 -1.58 16 17 C 0.06 0.70 6.55 -3.83 -0.03 0.68 16 18 N -0.69 -9.59 6.85 -113.82 -0.78 -10.37 16 19 C 0.06 1.02 5.15 -3.84 -0.02 1.00 16 20 H 0.27 8.29 7.22 -40.82 -0.29 8.00 16 21 H 0.01 0.18 6.60 -51.93 -0.34 -0.16 16 22 H 0.01 0.23 8.01 -51.93 -0.42 -0.19 16 23 H 0.33 6.07 7.14 -39.29 -0.28 5.79 16 24 H 0.32 5.12 7.34 -39.29 -0.29 4.83 16 25 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 26 H 0.05 0.73 6.65 -51.93 -0.35 0.39 16 27 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 28 H 0.06 0.62 8.14 -51.92 -0.42 0.20 16 29 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.02 0.29 8.14 -51.93 -0.42 -0.14 16 31 H 0.34 4.09 8.90 -39.29 -0.35 3.74 16 32 H 0.02 0.38 6.62 -51.93 -0.34 0.04 16 33 H 0.08 1.53 6.60 -51.93 -0.34 1.19 16 LS Contribution 255.65 15.07 3.85 3.85 Total: -1.00 -31.33 255.65 -7.67 -39.01 By element: Atomic # 1 Polarization: 13.58 SS G_CDS: -5.17 Total: 8.42 kcal Atomic # 6 Polarization: -17.20 SS G_CDS: -1.21 Total: -18.42 kcal Atomic # 7 Polarization: -54.23 SS G_CDS: -0.06 Total: -54.29 kcal Atomic # 14 Polarization: 26.52 SS G_CDS: -5.08 Total: 21.43 kcal Total LS contribution 3.85 Total: 3.85 kcal Total: -31.33 -7.67 -39.01 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259974933.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.348 kcal (2) G-P(sol) polarization free energy of solvation -31.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.006 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds