Wall clock time and date at job start Mon Mar 30 2020 02:33:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86798 * 119.99772 * 2 1 4 4 H 1.48506 * 109.47297 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47261 * 60.00248 * 3 2 1 6 6 H 1.48500 * 109.47454 * 300.00241 * 3 2 1 7 7 C 1.37875 * 120.00380 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00559 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99838 * 359.97438 * 7 2 1 10 10 C 1.53002 * 109.47207 * 180.02562 * 9 7 2 11 11 H 1.08994 * 109.46988 * 305.00182 * 10 9 7 12 12 N 1.46899 * 109.46742 * 64.99909 * 10 9 7 13 13 C 1.52995 * 109.47002 * 184.99843 * 10 9 7 14 14 H 1.09001 * 109.50288 * 59.92185 * 13 10 9 15 15 C 1.53120 * 109.50151 * 180.02562 * 13 10 9 16 16 C 1.53121 * 109.15859 * 177.59789 * 15 13 10 17 17 C 1.53035 * 109.27940 * 302.33824 * 16 15 13 18 18 N 1.46853 * 109.51782 * 59.18524 * 17 16 15 19 19 C 1.46841 * 111.19652 * 298.25559 * 18 17 16 20 20 H 0.97001 * 119.99667 * 180.02562 * 1 2 3 21 21 H 1.09005 * 109.46894 * 300.00433 * 9 7 2 22 22 H 1.08998 * 109.47107 * 60.00164 * 9 7 2 23 23 H 1.00908 * 111.00177 * 60.00491 * 12 10 9 24 24 H 1.00906 * 110.99875 * 183.95255 * 12 10 9 25 25 H 1.08999 * 109.52458 * 297.50087 * 15 13 10 26 26 H 1.08996 * 109.52717 * 57.62543 * 15 13 10 27 27 H 1.08993 * 109.50735 * 62.28688 * 16 15 13 28 28 H 1.09007 * 109.49865 * 182.36170 * 16 15 13 29 29 H 1.08999 * 109.46286 * 179.19682 * 17 16 15 30 30 H 1.08997 * 109.46495 * 299.17939 * 17 16 15 31 31 H 1.00900 * 110.99824 * 174.15958 * 18 17 16 32 32 H 1.09002 * 109.46500 * 301.72413 * 19 18 17 33 33 H 1.09000 * 109.46400 * 181.76443 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3965 1.2125 6 1 1.8903 2.3965 -1.2124 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 1 2.9295 -3.5551 -0.8423 12 7 3.0084 -3.6538 1.2547 13 6 1.4846 -4.9835 -0.1262 14 1 0.9171 -4.9895 -1.0568 15 6 2.4790 -6.1479 -0.1256 16 6 1.7065 -7.4683 -0.1912 17 6 0.7425 -7.5492 0.9946 18 7 -0.1882 -6.4142 0.9486 19 6 0.5269 -5.1364 1.0577 20 1 -0.4850 -0.8401 0.0004 21 1 0.6247 -2.5570 0.8897 22 1 0.6242 -2.5567 -0.8903 23 1 2.3962 -3.7517 2.0508 24 1 3.7162 -4.3730 1.2524 25 1 3.1356 -6.0666 -0.9919 26 1 3.0744 -6.1180 0.7868 27 1 1.1424 -7.5141 -1.1226 28 1 2.4073 -8.3023 -0.1488 29 1 0.1808 -8.4819 0.9430 30 1 1.3084 -7.5171 1.9256 31 1 -0.8939 -6.4960 1.6651 32 1 1.0938 -5.1157 1.9884 33 1 -0.1914 -4.3166 1.0520 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259974933.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:53 Heat of formation + Delta-G solvation = -46.698932 kcal Electronic energy + Delta-G solvation = -13189.801008 eV Core-core repulsion = 11055.000684 eV Total energy + Delta-G solvation = -2134.800324 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.34716 -36.89737 -34.80005 -32.83112 -30.88025 -29.87639 -26.05830 -24.90349 -24.02853 -21.63343 -20.10259 -18.87497 -17.54322 -16.94402 -15.83752 -15.59578 -15.51461 -15.28788 -14.86477 -14.69336 -14.24140 -13.75711 -13.42112 -13.19393 -12.70844 -12.34696 -12.23592 -11.93212 -11.87999 -11.75316 -11.43084 -11.01830 -10.63040 -10.47798 -9.52319 -9.27718 -8.58490 -6.24480 1.53208 1.63148 1.80409 2.61093 3.19122 3.23813 3.72202 3.82040 3.85656 3.94759 4.14144 4.33845 4.39211 4.54253 4.65203 4.67327 4.74230 4.85765 4.93508 5.04551 5.10017 5.20076 5.28488 5.37375 5.53528 5.98385 6.12522 6.32172 6.42314 6.43877 6.68531 6.80377 7.53379 8.82103 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.067012 B = 0.008197 C = 0.007713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 417.737822 B = 3415.098847 C = 3629.535118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C -0.049 4.049 3 Si 1.122 2.878 4 H -0.273 1.273 5 H -0.281 1.281 6 H -0.281 1.281 7 C -0.584 4.584 8 H 0.048 0.952 9 C 0.022 3.978 10 C 0.121 3.879 11 H 0.057 0.943 12 N -0.832 5.832 13 C -0.112 4.112 14 H 0.054 0.946 15 C -0.113 4.113 16 C -0.114 4.114 17 C 0.056 3.944 18 N -0.698 5.698 19 C 0.071 3.929 20 H 0.252 0.748 21 H -0.007 1.007 22 H -0.018 1.018 23 H 0.334 0.666 24 H 0.339 0.661 25 H 0.065 0.935 26 H 0.065 0.935 27 H 0.059 0.941 28 H 0.088 0.912 29 H 0.091 0.909 30 H 0.033 0.967 31 H 0.349 0.651 32 H 0.031 0.969 33 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.029 -15.068 2.560 15.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.587 5.587 2 C -0.244 4.244 3 Si 0.945 3.055 4 H -0.198 1.198 5 H -0.207 1.207 6 H -0.207 1.207 7 C -0.622 4.622 8 H 0.067 0.933 9 C -0.015 4.015 10 C 0.008 3.992 11 H 0.075 0.925 12 N -0.363 5.363 13 C -0.133 4.133 14 H 0.073 0.927 15 C -0.150 4.150 16 C -0.151 4.151 17 C -0.073 4.073 18 N -0.330 5.330 19 C -0.058 4.058 20 H 0.062 0.938 21 H 0.011 0.989 22 H 0.000 1.000 23 H 0.148 0.852 24 H 0.153 0.847 25 H 0.084 0.916 26 H 0.084 0.916 27 H 0.078 0.922 28 H 0.107 0.893 29 H 0.109 0.891 30 H 0.051 0.949 31 H 0.168 0.832 32 H 0.049 0.951 33 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 4.065 -12.694 1.671 13.434 hybrid contribution -0.415 -2.378 0.942 2.591 sum 3.650 -15.072 2.613 15.727 Atomic orbital electron populations 1.70871 1.07883 1.29525 1.50379 1.27336 0.96684 1.06769 0.93638 0.82857 0.74174 0.71265 0.77228 1.19828 1.20700 1.20696 1.22397 0.94563 0.92869 1.52372 0.93345 1.19165 0.94202 0.94464 0.93659 1.21150 0.93850 0.92058 0.92106 0.92507 1.58662 1.18491 1.55589 1.03583 1.21891 0.96880 0.96125 0.98445 0.92705 1.21619 0.97197 0.94111 1.02109 1.21582 0.97868 0.97038 0.98640 1.22019 0.94286 0.93765 0.97205 1.60233 1.16226 1.01729 1.54847 1.21785 0.95997 0.91594 0.96437 0.93846 0.98917 0.99995 0.85239 0.84673 0.91620 0.91619 0.92191 0.89316 0.89107 0.94895 0.83207 0.95054 0.93123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.75 13.65 21.45 0.29 -60.46 16 2 C -0.05 -2.93 5.46 84.65 0.46 -2.47 16 3 Si 1.12 53.11 29.90 68.60 2.05 55.16 16 4 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 5 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 6 H -0.28 -12.81 7.11 99.48 0.71 -12.11 16 7 C -0.58 -34.47 8.84 25.60 0.23 -34.24 16 8 H 0.05 2.87 7.74 -2.91 -0.02 2.85 16 9 C 0.02 1.18 3.43 29.85 0.10 1.28 16 10 C 0.12 4.96 2.57 44.91 0.12 5.07 16 11 H 0.06 2.46 8.14 -2.39 -0.02 2.44 16 12 N -0.83 -30.73 8.77 -168.69 -1.48 -32.21 16 13 C -0.11 -3.78 2.23 -10.74 -0.02 -3.80 16 14 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 15 C -0.11 -2.89 5.01 30.67 0.15 -2.73 16 16 C -0.11 -2.43 6.09 30.65 0.19 -2.24 16 17 C 0.06 1.17 6.55 86.32 0.57 1.74 16 18 N -0.70 -18.42 6.85 -514.01 -3.52 -21.93 16 19 C 0.07 2.29 5.15 86.33 0.44 2.74 16 20 H 0.25 16.38 7.22 -92.71 -0.67 15.72 16 21 H -0.01 -0.41 6.60 -2.38 -0.02 -0.42 16 22 H -0.02 -1.04 8.01 -2.39 -0.02 -1.06 16 23 H 0.33 11.98 7.14 -89.69 -0.64 11.34 16 24 H 0.34 10.18 7.34 -89.69 -0.66 9.52 16 25 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 26 H 0.07 1.55 6.65 -2.39 -0.02 1.53 16 27 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 28 H 0.09 1.45 8.14 -2.38 -0.02 1.43 16 29 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 30 H 0.03 0.66 8.14 -2.39 -0.02 0.64 16 31 H 0.35 7.93 8.90 -89.69 -0.80 7.13 16 32 H 0.03 0.95 6.62 -2.39 -0.02 0.94 16 33 H 0.05 1.94 6.60 -2.39 -0.02 1.92 16 Total: -1.00 -67.84 255.65 -1.31 -69.15 By element: Atomic # 1 Polarization: 25.84 SS G_CDS: -0.89 Total: 24.95 kcal Atomic # 6 Polarization: -36.89 SS G_CDS: 2.23 Total: -34.66 kcal Atomic # 7 Polarization: -109.90 SS G_CDS: -4.71 Total: -114.60 kcal Atomic # 14 Polarization: 53.11 SS G_CDS: 2.05 Total: 55.16 kcal Total: -67.84 -1.31 -69.15 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259974933.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.451 kcal (2) G-P(sol) polarization free energy of solvation -67.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.150 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds