Wall clock time and date at job start Mon Mar 30 2020 02:33:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86803 * 119.99951 * 2 1 4 4 H 1.48500 * 109.46999 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.46942 * 300.00690 * 3 2 1 6 6 H 1.48504 * 109.46979 * 60.00603 * 3 2 1 7 7 C 1.37877 * 120.00094 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00248 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00001 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.46912 * 180.02562 * 9 7 2 11 11 H 1.08990 * 109.47170 * 54.99987 * 10 9 7 12 12 N 1.46901 * 109.47143 * 294.99665 * 10 9 7 13 13 C 1.53002 * 109.46776 * 175.00090 * 10 9 7 14 14 H 1.08998 * 109.50270 * 60.07790 * 13 10 9 15 15 C 1.53125 * 109.50229 * 180.19118 * 13 10 9 16 16 C 1.53112 * 109.16203 * 177.59317 * 15 13 10 17 17 C 1.53036 * 109.28036 * 302.35160 * 16 15 13 18 18 N 1.46848 * 109.52616 * 59.17824 * 17 16 15 19 19 C 1.46852 * 111.19739 * 298.25857 * 18 17 16 20 20 H 0.97000 * 120.00333 * 359.97438 * 1 2 3 21 21 H 1.09002 * 109.47152 * 60.00329 * 9 7 2 22 22 H 1.09001 * 109.46980 * 300.00429 * 9 7 2 23 23 H 1.00897 * 111.00316 * 176.04452 * 12 10 9 24 24 H 1.00902 * 111.00138 * 300.00948 * 12 10 9 25 25 H 1.08991 * 109.52545 * 297.50448 * 15 13 10 26 26 H 1.09002 * 109.51588 * 57.69387 * 15 13 10 27 27 H 1.08998 * 109.50613 * 182.40781 * 16 15 13 28 28 H 1.09000 * 109.53477 * 62.31036 * 16 15 13 29 29 H 1.09004 * 109.46540 * 299.15787 * 17 16 15 30 30 H 1.09003 * 109.46256 * 179.19335 * 17 16 15 31 31 H 1.00898 * 111.00148 * 62.35309 * 18 17 16 32 32 H 1.08996 * 109.46079 * 301.72651 * 19 18 17 33 33 H 1.08997 * 109.45712 * 181.74810 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8905 2.3964 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2454 -3.6620 -0.0005 11 1 2.9294 -3.5552 0.8412 12 7 3.0084 -3.6539 -1.2558 13 6 1.4845 -4.9835 0.1252 14 1 0.8012 -5.0916 -0.7172 15 6 2.4793 -6.1477 0.1300 16 6 1.7148 -7.4611 0.3165 17 6 0.9129 -7.3987 1.6184 18 7 -0.0244 -6.2695 1.5638 19 6 0.6893 -4.9928 1.4326 20 1 -0.4850 0.8400 0.0004 21 1 0.6241 -2.5568 -0.8903 22 1 0.6247 -2.5571 0.8897 23 1 3.7162 -4.3730 -1.2535 24 1 2.3961 -3.7516 -2.0518 25 1 3.0176 -6.1708 -0.8174 26 1 3.1868 -6.0186 0.9491 27 1 2.4213 -8.2898 0.3636 28 1 1.0352 -7.6096 -0.5227 29 1 1.5942 -7.2648 2.4586 30 1 0.3561 -8.3269 1.7469 31 1 -0.6916 -6.3892 0.8164 32 1 1.3717 -4.8702 2.2736 33 1 -0.0299 -4.1738 1.4261 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259974941.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:55 Heat of formation + Delta-G solvation = -23.011074 kcal Electronic energy + Delta-G solvation = -13107.298238 eV Core-core repulsion = 10973.525097 eV Total energy + Delta-G solvation = -2133.773142 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.01411 -35.28703 -32.48922 -31.33642 -29.83775 -28.11259 -24.44168 -23.02174 -22.30312 -20.24281 -19.42541 -16.31818 -15.80342 -15.17992 -14.67181 -14.45864 -14.18866 -13.86610 -13.07250 -12.57517 -12.46660 -12.07165 -11.85037 -11.26573 -11.14466 -10.94300 -10.79753 -10.68631 -10.41817 -10.15571 -10.02723 -9.18494 -8.98648 -8.31333 -8.25140 -7.62423 -5.87934 -3.85656 3.39260 3.46498 3.52580 4.50266 4.57817 4.85963 5.03706 5.09530 5.24823 5.44446 5.49836 5.62986 5.64652 5.74709 5.85731 6.01657 6.07086 6.16543 6.20473 6.29292 6.56577 6.69044 6.96340 7.22405 7.56048 7.60622 7.76600 8.06200 8.14942 8.25365 8.60266 9.20910 9.76197 11.23962 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.060195 B = 0.008297 C = 0.007629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 465.046126 B = 3374.019406 C = 3669.176401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.049 3.951 3 Si 0.890 3.110 4 H -0.273 1.273 5 H -0.287 1.287 6 H -0.287 1.287 7 C -0.491 4.491 8 H 0.060 0.940 9 C 0.028 3.972 10 C 0.105 3.895 11 H 0.066 0.934 12 N -0.827 5.827 13 C -0.157 4.157 14 H 0.061 0.939 15 C -0.116 4.116 16 C -0.156 4.156 17 C 0.057 3.943 18 N -0.688 5.688 19 C 0.063 3.937 20 H 0.257 0.743 21 H 0.012 0.988 22 H 0.024 0.976 23 H 0.317 0.683 24 H 0.331 0.669 25 H 0.056 0.944 26 H 0.061 0.939 27 H 0.060 0.940 28 H 0.057 0.943 29 H 0.069 0.931 30 H 0.068 0.932 31 H 0.337 0.663 32 H 0.069 0.931 33 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.403 -13.363 0.610 13.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.150 4.150 3 Si 0.719 3.281 4 H -0.198 1.198 5 H -0.213 1.213 6 H -0.214 1.214 7 C -0.530 4.530 8 H 0.079 0.921 9 C -0.009 4.009 10 C -0.007 4.007 11 H 0.084 0.916 12 N -0.354 5.354 13 C -0.179 4.179 14 H 0.079 0.921 15 C -0.154 4.154 16 C -0.195 4.195 17 C -0.073 4.073 18 N -0.316 5.316 19 C -0.067 4.067 20 H 0.066 0.934 21 H 0.030 0.970 22 H 0.042 0.958 23 H 0.129 0.871 24 H 0.143 0.857 25 H 0.074 0.926 26 H 0.079 0.921 27 H 0.079 0.921 28 H 0.076 0.924 29 H 0.088 0.912 30 H 0.086 0.914 31 H 0.154 0.846 32 H 0.088 0.912 33 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 2.423 -12.440 1.530 12.766 hybrid contribution 0.369 -0.106 -1.215 1.274 sum 2.792 -12.546 0.315 12.857 Atomic orbital electron populations 1.69973 1.05962 1.26152 1.52356 1.25025 0.94805 0.99148 0.96058 0.86557 0.80217 0.84068 0.77256 1.19816 1.21326 1.21351 1.21231 0.93370 0.90315 1.48085 0.92136 1.19206 0.93181 0.91443 0.97041 1.21635 0.95135 0.92480 0.91454 0.91622 1.58817 1.18079 1.54081 1.04386 1.22769 0.98356 0.97461 0.99310 0.92069 1.21641 0.98091 0.94320 1.01332 1.22246 0.99941 0.98011 0.99313 1.21998 0.94717 0.94169 0.96456 1.60733 1.17315 1.02352 1.51161 1.22144 0.97493 0.91145 0.95900 0.93379 0.96982 0.95791 0.87130 0.85670 0.92580 0.92056 0.92095 0.92418 0.91214 0.91394 0.84615 0.91225 0.89240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.44 13.29 55.43 0.74 -26.71 16 2 C 0.05 1.43 5.46 -17.82 -0.10 1.33 16 3 Si 0.89 22.36 29.54 -169.99 -5.02 17.34 16 4 H -0.27 -6.78 7.11 56.52 0.40 -6.38 16 5 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 6 H -0.29 -7.13 7.11 56.52 0.40 -6.72 16 7 C -0.49 -14.01 8.84 -34.44 -0.30 -14.31 16 8 H 0.06 1.75 7.74 -52.49 -0.41 1.34 16 9 C 0.03 0.71 4.41 -27.88 -0.12 0.59 16 10 C 0.11 2.08 2.34 -67.71 -0.16 1.92 16 11 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 12 N -0.83 -15.40 8.84 -4.67 -0.04 -15.44 16 13 C -0.16 -2.52 2.08 -90.54 -0.19 -2.71 16 14 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 15 C -0.12 -1.55 4.88 -26.61 -0.13 -1.68 16 16 C -0.16 -1.80 6.08 -26.65 -0.16 -1.96 16 17 C 0.06 0.68 6.55 -3.83 -0.03 0.65 16 18 N -0.69 -9.68 6.87 -113.81 -0.78 -10.46 16 19 C 0.06 1.02 5.47 -3.83 -0.02 1.00 16 20 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 21 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 22 H 0.02 0.63 6.20 -51.93 -0.32 0.31 16 23 H 0.32 4.99 7.46 -39.29 -0.29 4.69 16 24 H 0.33 5.98 9.00 -39.29 -0.35 5.63 16 25 H 0.06 0.72 6.91 -51.93 -0.36 0.36 16 26 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 27 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 31 H 0.34 4.45 8.86 -39.29 -0.35 4.10 16 32 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 33 H 0.09 1.66 6.37 -51.93 -0.33 1.33 16 LS Contribution 260.07 15.07 3.92 3.92 Total: -1.00 -30.04 260.07 -7.75 -37.79 By element: Atomic # 1 Polarization: 14.07 SS G_CDS: -5.35 Total: 8.72 kcal Atomic # 6 Polarization: -13.96 SS G_CDS: -1.21 Total: -15.16 kcal Atomic # 7 Polarization: -52.52 SS G_CDS: -0.09 Total: -52.61 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -5.02 Total: 17.34 kcal Total LS contribution 3.92 Total: 3.92 kcal Total: -30.04 -7.75 -37.79 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259974941.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.782 kcal (2) G-P(sol) polarization free energy of solvation -30.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.793 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds