Wall clock time and date at job start Mon Mar 30 2020 02:33:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86803 * 119.99951 * 2 1 4 4 H 1.48500 * 109.46999 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.46942 * 300.00690 * 3 2 1 6 6 H 1.48504 * 109.46979 * 60.00603 * 3 2 1 7 7 C 1.37877 * 120.00094 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00248 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00001 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.46912 * 180.02562 * 9 7 2 11 11 H 1.08990 * 109.47170 * 54.99987 * 10 9 7 12 12 N 1.46901 * 109.47143 * 294.99665 * 10 9 7 13 13 C 1.53002 * 109.46776 * 175.00090 * 10 9 7 14 14 H 1.08998 * 109.50270 * 60.07790 * 13 10 9 15 15 C 1.53125 * 109.50229 * 180.19118 * 13 10 9 16 16 C 1.53112 * 109.16203 * 177.59317 * 15 13 10 17 17 C 1.53036 * 109.28036 * 302.35160 * 16 15 13 18 18 N 1.46848 * 109.52616 * 59.17824 * 17 16 15 19 19 C 1.46852 * 111.19739 * 298.25857 * 18 17 16 20 20 H 0.97000 * 120.00333 * 359.97438 * 1 2 3 21 21 H 1.09002 * 109.47152 * 60.00329 * 9 7 2 22 22 H 1.09001 * 109.46980 * 300.00429 * 9 7 2 23 23 H 1.00897 * 111.00316 * 176.04452 * 12 10 9 24 24 H 1.00902 * 111.00138 * 300.00948 * 12 10 9 25 25 H 1.08991 * 109.52545 * 297.50448 * 15 13 10 26 26 H 1.09002 * 109.51588 * 57.69387 * 15 13 10 27 27 H 1.08998 * 109.50613 * 182.40781 * 16 15 13 28 28 H 1.09000 * 109.53477 * 62.31036 * 16 15 13 29 29 H 1.09004 * 109.46540 * 299.15787 * 17 16 15 30 30 H 1.09003 * 109.46256 * 179.19335 * 17 16 15 31 31 H 1.00898 * 111.00148 * 62.35309 * 18 17 16 32 32 H 1.08996 * 109.46079 * 301.72651 * 19 18 17 33 33 H 1.08997 * 109.45712 * 181.74810 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8905 2.3964 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2454 -3.6620 -0.0005 11 1 2.9294 -3.5552 0.8412 12 7 3.0084 -3.6539 -1.2558 13 6 1.4845 -4.9835 0.1252 14 1 0.8012 -5.0916 -0.7172 15 6 2.4793 -6.1477 0.1300 16 6 1.7148 -7.4611 0.3165 17 6 0.9129 -7.3987 1.6184 18 7 -0.0244 -6.2695 1.5638 19 6 0.6893 -4.9928 1.4326 20 1 -0.4850 0.8400 0.0004 21 1 0.6241 -2.5568 -0.8903 22 1 0.6247 -2.5571 0.8897 23 1 3.7162 -4.3730 -1.2535 24 1 2.3961 -3.7516 -2.0518 25 1 3.0176 -6.1708 -0.8174 26 1 3.1868 -6.0186 0.9491 27 1 2.4213 -8.2898 0.3636 28 1 1.0352 -7.6096 -0.5227 29 1 1.5942 -7.2648 2.4586 30 1 0.3561 -8.3269 1.7469 31 1 -0.6916 -6.3892 0.8164 32 1 1.3717 -4.8702 2.2736 33 1 -0.0299 -4.1738 1.4261 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259974941.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:55 Heat of formation + Delta-G solvation = -45.928397 kcal Electronic energy + Delta-G solvation = -13108.292008 eV Core-core repulsion = 10973.525097 eV Total energy + Delta-G solvation = -2134.766911 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.27335 -36.81051 -34.57198 -32.50325 -31.15564 -30.04618 -26.18498 -24.25358 -23.83226 -21.47695 -20.99130 -18.40746 -17.14778 -16.73642 -16.32111 -15.79645 -15.58298 -15.13682 -14.53988 -14.26397 -13.90585 -13.56898 -13.19369 -12.98271 -12.80338 -12.56257 -12.32812 -12.14923 -11.89368 -11.70688 -11.58941 -11.12773 -10.92835 -10.49302 -9.56076 -9.01283 -8.11534 -6.16909 1.40548 1.41282 1.54794 2.46486 3.21293 3.38885 3.74230 3.85127 3.93738 4.06903 4.24150 4.41480 4.49391 4.58956 4.62966 4.75241 4.98153 5.01556 5.08046 5.09736 5.14269 5.27155 5.38756 5.52519 5.74718 5.88595 6.08031 6.34649 6.47356 6.57144 6.86210 6.98038 7.49442 9.00192 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.060195 B = 0.008297 C = 0.007629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 465.046126 B = 3374.019406 C = 3669.176401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.007 4.007 3 Si 0.958 3.042 4 H -0.267 1.267 5 H -0.282 1.282 6 H -0.280 1.280 7 C -0.507 4.507 8 H 0.055 0.945 9 C 0.035 3.965 10 C 0.117 3.883 11 H 0.056 0.944 12 N -0.837 5.837 13 C -0.143 4.143 14 H 0.054 0.946 15 C -0.111 4.111 16 C -0.148 4.148 17 C 0.055 3.945 18 N -0.692 5.692 19 C 0.070 3.930 20 H 0.259 0.741 21 H -0.016 1.016 22 H 0.004 0.996 23 H 0.338 0.662 24 H 0.335 0.665 25 H 0.066 0.934 26 H 0.061 0.939 27 H 0.084 0.916 28 H 0.061 0.939 29 H 0.068 0.932 30 H 0.090 0.910 31 H 0.342 0.658 32 H 0.064 0.936 33 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.573 -14.561 0.453 15.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.203 4.203 3 Si 0.784 3.216 4 H -0.191 1.191 5 H -0.208 1.208 6 H -0.206 1.206 7 C -0.545 4.545 8 H 0.073 0.927 9 C -0.002 4.002 10 C 0.005 3.995 11 H 0.074 0.926 12 N -0.366 5.366 13 C -0.165 4.165 14 H 0.073 0.927 15 C -0.149 4.149 16 C -0.187 4.187 17 C -0.075 4.075 18 N -0.320 5.320 19 C -0.061 4.061 20 H 0.068 0.932 21 H 0.003 0.997 22 H 0.022 0.978 23 H 0.152 0.848 24 H 0.147 0.853 25 H 0.085 0.915 26 H 0.079 0.921 27 H 0.103 0.897 28 H 0.079 0.921 29 H 0.087 0.913 30 H 0.108 0.892 31 H 0.160 0.840 32 H 0.082 0.918 33 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 3.608 -13.665 1.372 14.199 hybrid contribution -0.015 0.243 -1.159 1.184 sum 3.593 -13.421 0.213 13.896 Atomic orbital electron populations 1.70097 1.07493 1.27143 1.53289 1.25890 0.95695 1.02939 0.95767 0.85492 0.79043 0.79573 0.77461 1.19109 1.20794 1.20632 1.21577 0.93299 0.91922 1.47698 0.92679 1.19056 0.93582 0.92859 0.94686 1.21272 0.94009 0.92443 0.91793 0.92605 1.58672 1.18593 1.55492 1.03832 1.22549 0.98471 0.96671 0.98846 0.92706 1.21596 0.97406 0.93928 1.01929 1.22189 1.00148 0.97408 0.98985 1.22112 0.94655 0.93924 0.96780 1.60694 1.17810 1.02030 1.51505 1.21912 0.96683 0.91626 0.95856 0.93230 0.99718 0.97784 0.84837 0.85274 0.91542 0.92065 0.89740 0.92065 0.91343 0.89188 0.84041 0.91762 0.92509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.14 13.29 21.45 0.28 -57.85 16 2 C -0.01 -0.40 5.46 84.65 0.46 0.06 16 3 Si 0.96 46.15 29.54 68.60 2.03 48.18 16 4 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 5 H -0.28 -13.29 7.11 99.48 0.71 -12.58 16 6 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 7 C -0.51 -29.36 8.84 25.60 0.23 -29.13 16 8 H 0.05 3.19 7.74 -2.91 -0.02 3.17 16 9 C 0.04 1.84 4.41 29.85 0.13 1.97 16 10 C 0.12 4.66 2.34 44.92 0.10 4.77 16 11 H 0.06 2.34 8.14 -2.39 -0.02 2.32 16 12 N -0.84 -30.48 8.84 -168.68 -1.49 -31.97 16 13 C -0.14 -4.52 2.08 -10.74 -0.02 -4.55 16 14 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 15 C -0.11 -2.70 4.88 30.67 0.15 -2.55 16 16 C -0.15 -2.93 6.08 30.64 0.19 -2.74 16 17 C 0.05 1.16 6.55 86.32 0.57 1.73 16 18 N -0.69 -18.72 6.87 -514.00 -3.53 -22.25 16 19 C 0.07 2.29 5.47 86.32 0.47 2.76 16 20 H 0.26 15.16 8.31 -92.71 -0.77 14.39 16 21 H -0.02 -0.89 8.14 -2.39 -0.02 -0.91 16 22 H 0.00 0.22 6.20 -2.39 -0.01 0.21 16 23 H 0.34 9.97 7.46 -89.70 -0.67 9.30 16 24 H 0.33 11.88 9.00 -89.69 -0.81 11.07 16 25 H 0.07 1.50 6.91 -2.39 -0.02 1.48 16 26 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 27 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 28 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 29 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 30 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 31 H 0.34 8.66 8.86 -89.70 -0.79 7.87 16 32 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 33 H 0.06 2.22 6.37 -2.39 -0.02 2.21 16 Total: -1.00 -64.67 260.07 -1.60 -66.26 By element: Atomic # 1 Polarization: 26.48 SS G_CDS: -1.16 Total: 25.32 kcal Atomic # 6 Polarization: -29.96 SS G_CDS: 2.28 Total: -27.68 kcal Atomic # 7 Polarization: -107.34 SS G_CDS: -4.74 Total: -112.08 kcal Atomic # 14 Polarization: 46.15 SS G_CDS: 2.03 Total: 48.18 kcal Total: -64.67 -1.60 -66.26 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259974941.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.336 kcal (2) G-P(sol) polarization free energy of solvation -64.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.264 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.928 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds