Wall clock time and date at job start Mon Mar 30 2020 02:33:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99913 * 2 1 4 4 H 1.48504 * 109.46742 * 240.00073 * 3 2 1 5 5 H 1.48495 * 109.47444 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47042 * 120.00273 * 3 2 1 7 7 C 1.37880 * 120.00079 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00042 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99682 * 0.02562 * 7 2 1 10 10 C 1.52996 * 109.46744 * 180.02562 * 9 7 2 11 11 H 1.09000 * 109.47404 * 304.99558 * 10 9 7 12 12 N 1.46894 * 109.47821 * 64.99853 * 10 9 7 13 13 C 1.53006 * 109.46927 * 185.00180 * 10 9 7 14 14 H 1.09007 * 109.49622 * 299.91400 * 13 10 9 15 15 C 1.53203 * 109.49217 * 179.82241 * 13 10 9 16 16 C 1.53123 * 109.11533 * 182.41941 * 15 13 10 17 17 C 1.53039 * 109.31189 * 57.63615 * 16 15 13 18 18 N 1.46856 * 109.51787 * 300.79882 * 17 16 15 19 19 C 1.46846 * 111.19871 * 61.74404 * 18 17 16 20 20 H 0.97002 * 119.99822 * 359.97438 * 1 2 3 21 21 H 1.08996 * 109.47586 * 59.99609 * 9 7 2 22 22 H 1.09007 * 109.46907 * 299.99399 * 9 7 2 23 23 H 1.00897 * 111.00124 * 59.99316 * 12 10 9 24 24 H 1.00899 * 111.00572 * 183.95774 * 12 10 9 25 25 H 1.08994 * 109.57907 * 62.50732 * 15 13 10 26 26 H 1.08997 * 109.51203 * 302.28996 * 15 13 10 27 27 H 1.09002 * 109.50371 * 297.67165 * 16 15 13 28 28 H 1.09003 * 109.50070 * 177.59325 * 16 15 13 29 29 H 1.09000 * 109.46148 * 60.81334 * 17 16 15 30 30 H 1.09002 * 109.46208 * 180.79044 * 17 16 15 31 31 H 1.00895 * 111.00317 * 297.64741 * 18 17 16 32 32 H 1.09004 * 109.46012 * 58.27074 * 19 18 17 33 33 H 1.08994 * 109.46057 * 178.23653 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6964 -1.2126 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6620 0.0018 11 1 2.9300 -3.5556 -0.8395 12 7 3.0074 -3.6534 1.2575 13 6 1.4845 -4.9836 -0.1239 14 1 0.8006 -5.0912 0.7181 15 6 2.4799 -6.1482 -0.1272 16 6 1.7147 -7.4613 -0.3140 17 6 0.9138 -7.3994 -1.6166 18 7 -0.0236 -6.2701 -1.5630 19 6 0.6901 -4.9934 -1.4319 20 1 -0.4850 0.8401 0.0004 21 1 0.6246 -2.5571 -0.8896 22 1 0.6240 -2.5567 0.8904 23 1 2.3946 -3.7508 2.0532 24 1 3.7152 -4.3725 1.2560 25 1 3.0176 -6.1716 0.8206 26 1 3.1880 -6.0196 -0.9457 27 1 1.0345 -7.6087 0.5248 28 1 2.4208 -8.2905 -0.3601 29 1 1.5958 -7.2658 -2.4563 30 1 0.3570 -8.3276 -1.7451 31 1 -0.6912 -6.3895 -0.8161 32 1 1.3731 -4.8712 -2.2725 33 1 -0.0290 -4.1744 -1.4263 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259974951.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:57 Heat of formation + Delta-G solvation = -22.946976 kcal Electronic energy + Delta-G solvation = -13106.858778 eV Core-core repulsion = 10973.088415 eV Total energy + Delta-G solvation = -2133.770362 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.00911 -35.28565 -32.48700 -31.33554 -29.83506 -28.11044 -24.43968 -23.01976 -22.30079 -20.24210 -19.42310 -16.31434 -15.80191 -15.17683 -14.67012 -14.46032 -14.19394 -13.86313 -13.07284 -12.57418 -12.45681 -12.07339 -11.84219 -11.26392 -11.14581 -10.93341 -10.79219 -10.68065 -10.45379 -10.15107 -10.01780 -9.18232 -9.01007 -8.31294 -8.24227 -7.62351 -5.87497 -3.85362 3.42404 3.45745 3.49766 4.50304 4.57889 4.86004 5.03636 5.09644 5.24924 5.44563 5.50006 5.63005 5.64748 5.74671 5.85741 6.01626 6.07092 6.16586 6.20526 6.29310 6.56645 6.69063 6.96518 7.22457 7.56122 7.60723 7.76577 8.06267 8.15199 8.25457 8.60427 9.20557 9.76307 11.24335 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.060195 B = 0.008296 C = 0.007629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 465.046864 B = 3374.224648 C = 3669.310140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.050 3.950 3 Si 0.891 3.109 4 H -0.279 1.279 5 H -0.290 1.290 6 H -0.278 1.278 7 C -0.493 4.493 8 H 0.059 0.941 9 C 0.029 3.971 10 C 0.105 3.895 11 H 0.066 0.934 12 N -0.827 5.827 13 C -0.157 4.157 14 H 0.061 0.939 15 C -0.116 4.116 16 C -0.156 4.156 17 C 0.057 3.943 18 N -0.688 5.688 19 C 0.063 3.937 20 H 0.258 0.742 21 H 0.024 0.976 22 H 0.012 0.988 23 H 0.331 0.669 24 H 0.317 0.683 25 H 0.056 0.944 26 H 0.061 0.939 27 H 0.057 0.943 28 H 0.060 0.940 29 H 0.069 0.931 30 H 0.068 0.932 31 H 0.337 0.663 32 H 0.069 0.931 33 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.370 -13.335 -0.601 13.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.150 4.150 3 Si 0.720 3.280 4 H -0.205 1.205 5 H -0.216 1.216 6 H -0.204 1.204 7 C -0.532 4.532 8 H 0.077 0.923 9 C -0.008 4.008 10 C -0.007 4.007 11 H 0.084 0.916 12 N -0.354 5.354 13 C -0.179 4.179 14 H 0.079 0.921 15 C -0.154 4.154 16 C -0.195 4.195 17 C -0.073 4.073 18 N -0.316 5.316 19 C -0.067 4.067 20 H 0.067 0.933 21 H 0.042 0.958 22 H 0.030 0.970 23 H 0.143 0.857 24 H 0.129 0.871 25 H 0.074 0.926 26 H 0.079 0.921 27 H 0.076 0.924 28 H 0.079 0.921 29 H 0.088 0.912 30 H 0.086 0.914 31 H 0.154 0.846 32 H 0.088 0.912 33 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 2.380 -12.407 -1.522 12.725 hybrid contribution 0.399 -0.114 1.212 1.281 sum 2.779 -12.522 -0.310 12.830 Atomic orbital electron populations 1.69953 1.05964 1.26378 1.52161 1.25020 0.94805 0.99120 0.96025 0.86669 0.79482 0.83364 0.78482 1.20490 1.21621 1.20410 1.21152 0.93289 0.90345 1.48392 0.92253 1.19193 0.93165 0.91402 0.97027 1.21635 0.95148 0.92485 0.91441 0.91630 1.58814 1.18086 1.54078 1.04385 1.22784 0.98349 0.97455 0.99306 0.92070 1.21656 0.98080 0.94321 1.01328 1.22251 0.99941 0.98015 0.99310 1.21999 0.94720 0.94167 0.96449 1.60732 1.17286 1.02351 1.51195 1.22142 0.97498 0.91145 0.95893 0.93260 0.95797 0.97000 0.85667 0.87133 0.92572 0.92060 0.92420 0.92100 0.91213 0.91391 0.84614 0.91228 0.89237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.46 13.29 55.43 0.74 -26.73 16 2 C 0.05 1.45 5.46 -17.82 -0.10 1.35 16 3 Si 0.89 22.38 29.54 -169.99 -5.02 17.36 16 4 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 5 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 6 H -0.28 -6.94 7.11 56.52 0.40 -6.53 16 7 C -0.49 -14.07 8.84 -34.44 -0.30 -14.38 16 8 H 0.06 1.70 7.74 -52.49 -0.41 1.30 16 9 C 0.03 0.74 4.41 -27.88 -0.12 0.61 16 10 C 0.10 2.08 2.34 -67.72 -0.16 1.92 16 11 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 12 N -0.83 -15.41 8.84 -4.67 -0.04 -15.46 16 13 C -0.16 -2.52 2.08 -90.50 -0.19 -2.71 16 14 H 0.06 1.03 8.14 -51.92 -0.42 0.61 16 15 C -0.12 -1.55 4.89 -26.56 -0.13 -1.68 16 16 C -0.16 -1.80 6.07 -26.65 -0.16 -1.96 16 17 C 0.06 0.68 6.56 -3.83 -0.03 0.65 16 18 N -0.69 -9.68 6.87 -113.81 -0.78 -10.46 16 19 C 0.06 1.03 5.47 -3.84 -0.02 1.00 16 20 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 21 H 0.02 0.63 6.20 -51.93 -0.32 0.31 16 22 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 23 H 0.33 5.99 9.00 -39.29 -0.35 5.64 16 24 H 0.32 4.99 7.46 -39.29 -0.29 4.69 16 25 H 0.06 0.72 6.91 -51.93 -0.36 0.36 16 26 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 27 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.34 4.45 8.86 -39.29 -0.35 4.10 16 32 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 33 H 0.09 1.66 6.37 -51.93 -0.33 1.33 16 LS Contribution 260.08 15.07 3.92 3.92 Total: -1.00 -30.00 260.08 -7.75 -37.75 By element: Atomic # 1 Polarization: 14.15 SS G_CDS: -5.35 Total: 8.79 kcal Atomic # 6 Polarization: -13.98 SS G_CDS: -1.21 Total: -15.18 kcal Atomic # 7 Polarization: -52.56 SS G_CDS: -0.09 Total: -52.65 kcal Atomic # 14 Polarization: 22.38 SS G_CDS: -5.02 Total: 17.36 kcal Total LS contribution 3.92 Total: 3.92 kcal Total: -30.00 -7.75 -37.75 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259974951.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.806 kcal (2) G-P(sol) polarization free energy of solvation -30.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.753 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds