Wall clock time and date at job start Mon Mar 30 2020 02:33:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99913 * 2 1 4 4 H 1.48504 * 109.46742 * 240.00073 * 3 2 1 5 5 H 1.48495 * 109.47444 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47042 * 120.00273 * 3 2 1 7 7 C 1.37880 * 120.00079 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00042 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99682 * 0.02562 * 7 2 1 10 10 C 1.52996 * 109.46744 * 180.02562 * 9 7 2 11 11 H 1.09000 * 109.47404 * 304.99558 * 10 9 7 12 12 N 1.46894 * 109.47821 * 64.99853 * 10 9 7 13 13 C 1.53006 * 109.46927 * 185.00180 * 10 9 7 14 14 H 1.09007 * 109.49622 * 299.91400 * 13 10 9 15 15 C 1.53203 * 109.49217 * 179.82241 * 13 10 9 16 16 C 1.53123 * 109.11533 * 182.41941 * 15 13 10 17 17 C 1.53039 * 109.31189 * 57.63615 * 16 15 13 18 18 N 1.46856 * 109.51787 * 300.79882 * 17 16 15 19 19 C 1.46846 * 111.19871 * 61.74404 * 18 17 16 20 20 H 0.97002 * 119.99822 * 359.97438 * 1 2 3 21 21 H 1.08996 * 109.47586 * 59.99609 * 9 7 2 22 22 H 1.09007 * 109.46907 * 299.99399 * 9 7 2 23 23 H 1.00897 * 111.00124 * 59.99316 * 12 10 9 24 24 H 1.00899 * 111.00572 * 183.95774 * 12 10 9 25 25 H 1.08994 * 109.57907 * 62.50732 * 15 13 10 26 26 H 1.08997 * 109.51203 * 302.28996 * 15 13 10 27 27 H 1.09002 * 109.50371 * 297.67165 * 16 15 13 28 28 H 1.09003 * 109.50070 * 177.59325 * 16 15 13 29 29 H 1.09000 * 109.46148 * 60.81334 * 17 16 15 30 30 H 1.09002 * 109.46208 * 180.79044 * 17 16 15 31 31 H 1.00895 * 111.00317 * 297.64741 * 18 17 16 32 32 H 1.09004 * 109.46012 * 58.27074 * 19 18 17 33 33 H 1.08994 * 109.46057 * 178.23653 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6964 -1.2126 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6620 0.0018 11 1 2.9300 -3.5556 -0.8395 12 7 3.0074 -3.6534 1.2575 13 6 1.4845 -4.9836 -0.1239 14 1 0.8006 -5.0912 0.7181 15 6 2.4799 -6.1482 -0.1272 16 6 1.7147 -7.4613 -0.3140 17 6 0.9138 -7.3994 -1.6166 18 7 -0.0236 -6.2701 -1.5630 19 6 0.6901 -4.9934 -1.4319 20 1 -0.4850 0.8401 0.0004 21 1 0.6246 -2.5571 -0.8896 22 1 0.6240 -2.5567 0.8904 23 1 2.3946 -3.7508 2.0532 24 1 3.7152 -4.3725 1.2560 25 1 3.0176 -6.1716 0.8206 26 1 3.1880 -6.0196 -0.9457 27 1 1.0345 -7.6087 0.5248 28 1 2.4208 -8.2905 -0.3601 29 1 1.5958 -7.2658 -2.4563 30 1 0.3570 -8.3276 -1.7451 31 1 -0.6912 -6.3895 -0.8161 32 1 1.3731 -4.8712 -2.2725 33 1 -0.0290 -4.1744 -1.4263 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259974951.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:56 Heat of formation + Delta-G solvation = -45.830930 kcal Electronic energy + Delta-G solvation = -13107.851100 eV Core-core repulsion = 10973.088415 eV Total energy + Delta-G solvation = -2134.762685 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.26918 -36.80989 -34.57064 -32.50278 -31.15384 -30.04457 -26.18233 -24.25265 -23.83136 -21.47640 -20.99050 -18.40107 -17.14792 -16.73493 -16.32732 -15.79570 -15.58285 -15.13381 -14.54220 -14.24870 -13.90283 -13.57264 -13.19178 -12.96069 -12.81847 -12.55143 -12.34576 -12.15053 -11.89051 -11.70347 -11.59156 -11.15458 -10.92470 -10.48236 -9.56116 -9.01311 -8.11172 -6.16729 1.41119 1.44001 1.51699 2.46640 3.21497 3.38862 3.74173 3.85156 3.93571 4.06972 4.24118 4.41451 4.49333 4.58905 4.62838 4.75215 4.98083 5.01524 5.08094 5.09726 5.14246 5.27076 5.38723 5.52332 5.74636 5.88477 6.08010 6.34668 6.47349 6.57100 6.86191 6.97760 7.49473 9.00179 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.060195 B = 0.008296 C = 0.007629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 465.046864 B = 3374.224648 C = 3669.310140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.006 4.006 3 Si 0.958 3.042 4 H -0.270 1.270 5 H -0.286 1.286 6 H -0.272 1.272 7 C -0.509 4.509 8 H 0.055 0.945 9 C 0.036 3.964 10 C 0.117 3.883 11 H 0.056 0.944 12 N -0.837 5.837 13 C -0.143 4.143 14 H 0.054 0.946 15 C -0.111 4.111 16 C -0.148 4.148 17 C 0.055 3.945 18 N -0.692 5.692 19 C 0.070 3.930 20 H 0.259 0.741 21 H 0.004 0.996 22 H -0.016 1.016 23 H 0.335 0.665 24 H 0.338 0.662 25 H 0.066 0.934 26 H 0.061 0.939 27 H 0.061 0.939 28 H 0.084 0.916 29 H 0.068 0.932 30 H 0.090 0.910 31 H 0.342 0.658 32 H 0.064 0.936 33 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.573 -14.538 -0.452 14.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.202 4.202 3 Si 0.784 3.216 4 H -0.195 1.195 5 H -0.211 1.211 6 H -0.198 1.198 7 C -0.547 4.547 8 H 0.073 0.927 9 C -0.001 4.001 10 C 0.005 3.995 11 H 0.074 0.926 12 N -0.366 5.366 13 C -0.165 4.165 14 H 0.073 0.927 15 C -0.149 4.149 16 C -0.187 4.187 17 C -0.075 4.075 18 N -0.320 5.320 19 C -0.061 4.061 20 H 0.068 0.932 21 H 0.022 0.978 22 H 0.003 0.997 23 H 0.147 0.853 24 H 0.152 0.848 25 H 0.085 0.915 26 H 0.079 0.921 27 H 0.079 0.921 28 H 0.103 0.897 29 H 0.087 0.913 30 H 0.108 0.892 31 H 0.160 0.840 32 H 0.082 0.918 33 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 3.600 -13.638 -1.372 14.172 hybrid contribution 0.006 0.234 1.159 1.183 sum 3.606 -13.404 -0.213 13.883 Atomic orbital electron populations 1.70084 1.07505 1.27283 1.53123 1.25888 0.95692 1.02929 0.95720 0.85604 0.78255 0.78904 0.78839 1.19513 1.21112 1.19762 1.21523 0.93298 0.91945 1.47983 0.92670 1.19045 0.93570 0.92835 0.94663 1.21272 0.94020 0.92442 0.91782 0.92602 1.58669 1.18598 1.55491 1.03825 1.22565 0.98469 0.96670 0.98840 0.92713 1.21612 0.97394 0.93921 1.01929 1.22194 1.00147 0.97416 0.98980 1.22114 0.94658 0.93922 0.96773 1.60692 1.17781 1.02028 1.51539 1.21909 0.96687 0.91628 0.95848 0.93212 0.97799 0.99750 0.85284 0.84833 0.91530 0.92064 0.92070 0.89741 0.91342 0.89182 0.84041 0.91767 0.92509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.19 13.29 21.45 0.28 -57.91 16 2 C -0.01 -0.36 5.46 84.66 0.46 0.10 16 3 Si 0.96 46.12 29.54 68.60 2.03 48.15 16 4 H -0.27 -12.52 7.11 99.48 0.71 -11.81 16 5 H -0.29 -13.43 7.11 99.48 0.71 -12.72 16 6 H -0.27 -12.77 7.11 99.48 0.71 -12.06 16 7 C -0.51 -29.52 8.84 25.60 0.23 -29.30 16 8 H 0.06 3.18 7.74 -2.91 -0.02 3.16 16 9 C 0.04 1.88 4.41 29.85 0.13 2.01 16 10 C 0.12 4.66 2.34 44.92 0.10 4.77 16 11 H 0.06 2.34 8.14 -2.39 -0.02 2.32 16 12 N -0.84 -30.50 8.84 -168.69 -1.49 -31.99 16 13 C -0.14 -4.53 2.08 -10.71 -0.02 -4.55 16 14 H 0.05 1.82 8.14 -2.38 -0.02 1.80 16 15 C -0.11 -2.70 4.89 30.70 0.15 -2.55 16 16 C -0.15 -2.93 6.07 30.65 0.19 -2.74 16 17 C 0.05 1.16 6.56 86.32 0.57 1.73 16 18 N -0.69 -18.73 6.87 -513.99 -3.53 -22.26 16 19 C 0.07 2.29 5.47 86.32 0.47 2.77 16 20 H 0.26 15.26 8.31 -92.71 -0.77 14.49 16 21 H 0.00 0.21 6.20 -2.39 -0.01 0.20 16 22 H -0.02 -0.90 8.14 -2.38 -0.02 -0.92 16 23 H 0.33 11.90 9.00 -89.70 -0.81 11.09 16 24 H 0.34 9.97 7.46 -89.69 -0.67 9.30 16 25 H 0.07 1.50 6.91 -2.39 -0.02 1.49 16 26 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 27 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 28 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 29 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 30 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 31 H 0.34 8.67 8.86 -89.70 -0.79 7.87 16 32 H 0.06 2.16 8.14 -2.38 -0.02 2.14 16 33 H 0.06 2.22 6.37 -2.39 -0.02 2.21 16 Total: -1.00 -64.61 260.08 -1.60 -66.21 By element: Atomic # 1 Polarization: 26.73 SS G_CDS: -1.16 Total: 25.57 kcal Atomic # 6 Polarization: -30.04 SS G_CDS: 2.28 Total: -27.77 kcal Atomic # 7 Polarization: -107.43 SS G_CDS: -4.74 Total: -112.16 kcal Atomic # 14 Polarization: 46.12 SS G_CDS: 2.03 Total: 48.15 kcal Total: -64.61 -1.60 -66.21 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259974951.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.381 kcal (2) G-P(sol) polarization free energy of solvation -64.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.212 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds