Wall clock time and date at job start Mon Mar 30 2020 01:50:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 110.05563 * 2 1 4 4 C 1.54267 * 110.03195 * 121.41727 * 2 1 3 5 5 C 1.54886 * 104.19854 * 95.67460 * 4 2 1 6 6 C 1.54885 * 102.74649 * 37.94244 * 5 4 2 7 7 C 1.53004 * 110.48619 * 203.25130 * 6 5 4 8 8 O 1.42896 * 110.48909 * 80.73486 * 6 5 4 9 9 C 1.34932 * 116.99720 * 61.45660 * 8 6 5 10 10 H 1.08003 * 119.99848 * 359.97438 * 9 8 6 11 11 C 1.38633 * 120.00045 * 180.02562 * 9 8 6 12 12 N 1.31581 * 120.00065 * 179.97438 * 11 9 8 13 13 Si 1.86798 * 120.00106 * 359.97438 * 11 9 8 14 14 H 1.48506 * 109.47297 * 89.99977 * 13 11 9 15 15 H 1.48503 * 109.47261 * 330.00158 * 13 11 9 16 16 H 1.48500 * 109.47454 * 210.00151 * 13 11 9 17 17 C 1.53875 * 110.03359 * 238.58203 * 2 1 3 18 18 H 1.09001 * 109.47173 * 300.03711 * 1 2 3 19 19 H 1.08999 * 109.46801 * 60.03704 * 1 2 3 20 20 H 1.09000 * 109.47398 * 180.02562 * 1 2 3 21 21 H 1.08995 * 109.47023 * 179.97438 * 3 2 1 22 22 H 1.09002 * 109.47028 * 299.96468 * 3 2 1 23 23 H 1.09000 * 109.47279 * 59.96049 * 3 2 1 24 24 H 1.09006 * 110.48610 * 336.99509 * 4 2 1 25 25 H 1.09000 * 110.59896 * 214.41438 * 4 2 1 26 26 H 1.09004 * 110.75409 * 279.63137 * 5 4 2 27 27 H 1.08997 * 110.91621 * 156.33088 * 5 4 2 28 28 H 1.09004 * 109.46539 * 296.75558 * 7 6 5 29 29 H 1.08990 * 109.47476 * 56.75620 * 7 6 5 30 30 H 1.09003 * 109.46934 * 176.76252 * 7 6 5 31 31 H 0.97006 * 119.99803 * 180.02562 * 12 11 9 32 32 H 1.09001 * 110.03129 * 121.42846 * 17 2 1 33 33 H 1.09001 * 110.02721 * 0.02562 * 17 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0547 1.4373 0.0000 4 6 2.0584 -0.7555 1.2369 5 6 2.3281 -2.1902 0.7192 6 6 2.8875 -1.9407 -0.7034 7 6 2.6836 -3.1757 -1.5832 8 8 4.2725 -1.5945 -0.6426 9 6 5.1114 -2.5140 -0.1215 10 1 4.7258 -3.4608 0.2267 11 6 6.4680 -2.2429 -0.0323 12 7 7.2860 -3.1394 0.4763 13 14 7.1348 -0.6050 -0.6339 14 1 7.1184 0.3758 0.4810 15 1 6.2879 -0.1043 -1.7462 16 1 8.5283 -0.7844 -1.1149 17 6 2.0571 -0.7536 -1.2337 18 1 -0.3633 0.5144 0.8897 19 1 -0.3633 0.5133 -0.8903 20 1 -0.3634 -1.0276 0.0005 21 1 3.1446 1.4261 0.0005 22 1 1.6971 1.9546 -0.8903 23 1 1.6961 1.9550 0.8896 24 1 1.3061 -0.7696 2.0255 25 1 2.9806 -0.3009 1.5989 26 1 1.4030 -2.7651 0.6752 27 1 3.0663 -2.6960 1.3414 28 1 3.2508 -4.0114 -1.1733 29 1 1.6247 -3.4329 -1.6086 30 1 3.0302 -2.9626 -2.5945 31 1 8.2352 -2.9495 0.5391 32 1 2.6867 -0.0954 -1.8324 33 1 1.2229 -1.1189 -1.8326 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260033470.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:43 Heat of formation + Delta-G solvation = -60.196581 kcal Electronic energy + Delta-G solvation = -13590.416521 eV Core-core repulsion = 11422.738143 eV Total energy + Delta-G solvation = -2167.678377 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.10560 -35.76937 -32.12912 -31.00979 -29.07412 -27.05758 -26.29292 -24.25272 -22.82367 -19.07550 -18.38222 -17.11521 -15.79411 -14.62621 -14.33921 -13.65572 -13.44544 -12.99212 -12.91791 -12.44983 -12.22234 -11.95415 -11.80278 -11.48122 -11.18607 -11.07864 -10.66891 -10.58158 -10.42045 -10.13683 -10.02929 -9.94786 -9.72712 -9.33569 -8.91849 -8.07122 -5.91211 -3.55927 3.46070 3.49199 3.66075 4.62992 4.91950 5.04632 5.14290 5.42336 5.44060 5.70069 5.75069 5.80499 5.84576 5.94424 6.03995 6.08196 6.14372 6.21440 6.28225 6.35705 6.45397 6.53563 6.59183 6.63952 6.71267 6.81367 6.91671 7.05162 7.16381 8.03793 8.47160 9.50243 10.08790 11.21908 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.040526 B = 0.012784 C = 0.011304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 690.755575 B = 2189.720818 C = 2476.367011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.069 4.069 3 C -0.137 4.137 4 C -0.106 4.106 5 C -0.145 4.145 6 C 0.129 3.871 7 C -0.162 4.162 8 O -0.316 6.316 9 C -0.343 4.343 10 H 0.080 0.920 11 C 0.040 3.960 12 N -0.918 5.918 13 Si 0.902 3.098 14 H -0.283 1.283 15 H -0.266 1.266 16 H -0.294 1.294 17 C -0.102 4.102 18 H 0.049 0.951 19 H 0.049 0.951 20 H 0.053 0.947 21 H 0.061 0.939 22 H 0.048 0.952 23 H 0.047 0.953 24 H 0.053 0.947 25 H 0.070 0.930 26 H 0.055 0.945 27 H 0.078 0.922 28 H 0.062 0.938 29 H 0.044 0.956 30 H 0.052 0.948 31 H 0.267 0.733 32 H 0.070 0.930 33 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.063 5.660 -1.424 13.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.069 4.069 3 C -0.195 4.195 4 C -0.143 4.143 5 C -0.183 4.183 6 C 0.089 3.911 7 C -0.220 4.220 8 O -0.231 6.231 9 C -0.421 4.421 10 H 0.098 0.902 11 C -0.156 4.156 12 N -0.564 5.564 13 Si 0.730 3.270 14 H -0.210 1.210 15 H -0.190 1.190 16 H -0.220 1.220 17 C -0.140 4.140 18 H 0.068 0.932 19 H 0.068 0.932 20 H 0.072 0.928 21 H 0.080 0.920 22 H 0.067 0.933 23 H 0.067 0.933 24 H 0.072 0.928 25 H 0.089 0.911 26 H 0.074 0.926 27 H 0.097 0.903 28 H 0.081 0.919 29 H 0.063 0.937 30 H 0.071 0.929 31 H 0.076 0.924 32 H 0.088 0.912 33 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -11.850 5.834 -1.475 13.290 hybrid contribution 0.377 0.428 -0.134 0.586 sum -11.472 6.261 -1.609 13.168 Atomic orbital electron populations 1.21893 0.95130 1.01278 1.00879 1.21136 0.94466 0.95319 0.95985 1.21899 1.01706 0.95320 1.00526 1.22344 1.00263 0.95897 0.95798 1.23023 1.00101 0.96422 0.98737 1.21808 0.84258 0.92293 0.92790 1.22254 0.99693 0.99622 1.00430 1.85326 1.13222 1.42600 1.82001 1.20292 0.88262 0.96816 1.36741 0.90220 1.24271 0.94898 0.98233 0.98217 1.69689 1.03730 1.34595 1.48398 0.86224 0.77216 0.83923 0.79593 1.20959 1.19018 1.22027 1.22278 0.98097 0.96897 0.96703 0.93182 0.93181 0.92810 0.92004 0.93336 0.93340 0.92841 0.91146 0.92631 0.90324 0.91891 0.93685 0.92861 0.92366 0.91154 0.91532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.69 8.15 37.16 0.30 -1.39 16 2 C -0.07 -1.07 0.94 -153.39 -0.14 -1.22 16 3 C -0.14 -2.03 8.16 37.16 0.30 -1.73 16 4 C -0.11 -1.82 5.88 -25.07 -0.15 -1.96 16 5 C -0.15 -2.77 5.82 -24.74 -0.14 -2.91 16 6 C 0.13 2.67 0.89 -88.96 -0.08 2.59 16 7 C -0.16 -3.13 8.40 37.16 0.31 -2.82 16 8 O -0.32 -8.20 8.28 -16.52 -0.14 -8.33 16 9 C -0.34 -9.90 8.69 30.88 0.27 -9.63 16 10 H 0.08 2.41 6.70 -52.48 -0.35 2.06 16 11 C 0.04 1.19 5.49 -17.51 -0.10 1.09 16 12 N -0.92 -28.63 13.96 55.48 0.77 -27.86 16 13 Si 0.90 23.52 28.61 -169.99 -4.86 18.65 16 14 H -0.28 -7.28 7.11 56.52 0.40 -6.88 16 15 H -0.27 -6.90 7.11 56.52 0.40 -6.50 16 16 H -0.29 -7.52 7.11 56.52 0.40 -7.12 16 17 C -0.10 -1.77 5.44 -25.61 -0.14 -1.91 16 18 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 19 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 20 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 21 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 22 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 23 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 24 H 0.05 0.80 7.84 -51.93 -0.41 0.39 16 25 H 0.07 1.35 7.86 -51.93 -0.41 0.95 16 26 H 0.06 0.93 8.06 -51.93 -0.42 0.51 16 27 H 0.08 1.71 6.85 -51.93 -0.36 1.36 16 28 H 0.06 1.32 7.05 -51.93 -0.37 0.96 16 29 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 31 H 0.27 7.84 8.31 -40.82 -0.34 7.50 16 32 H 0.07 1.29 7.60 -51.93 -0.39 0.89 16 33 H 0.07 1.01 7.37 -51.93 -0.38 0.62 16 LS Contribution 262.80 15.07 3.96 3.96 Total: -1.00 -30.80 262.80 -5.43 -36.23 By element: Atomic # 1 Polarization: 2.83 SS G_CDS: -5.60 Total: -2.77 kcal Atomic # 6 Polarization: -20.32 SS G_CDS: 0.44 Total: -19.88 kcal Atomic # 7 Polarization: -28.63 SS G_CDS: 0.77 Total: -27.86 kcal Atomic # 8 Polarization: -8.20 SS G_CDS: -0.14 Total: -8.33 kcal Atomic # 14 Polarization: 23.52 SS G_CDS: -4.86 Total: 18.65 kcal Total LS contribution 3.96 Total: 3.96 kcal Total: -30.80 -5.43 -36.23 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260033470.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.966 kcal (2) G-P(sol) polarization free energy of solvation -30.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.230 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds