Wall clock time and date at job start Mon Mar 30 2020 01:50:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 110.05563 * 2 1 4 4 C 1.54267 * 110.03195 * 121.41727 * 2 1 3 5 5 C 1.54886 * 104.19854 * 95.67460 * 4 2 1 6 6 C 1.54885 * 102.74649 * 37.94244 * 5 4 2 7 7 C 1.53004 * 110.48619 * 203.25130 * 6 5 4 8 8 O 1.42896 * 110.48909 * 80.73486 * 6 5 4 9 9 C 1.34932 * 116.99720 * 61.45660 * 8 6 5 10 10 H 1.08003 * 119.99848 * 359.97438 * 9 8 6 11 11 C 1.38633 * 120.00045 * 180.02562 * 9 8 6 12 12 N 1.31581 * 120.00065 * 179.97438 * 11 9 8 13 13 Si 1.86798 * 120.00106 * 359.97438 * 11 9 8 14 14 H 1.48506 * 109.47297 * 89.99977 * 13 11 9 15 15 H 1.48503 * 109.47261 * 330.00158 * 13 11 9 16 16 H 1.48500 * 109.47454 * 210.00151 * 13 11 9 17 17 C 1.53875 * 110.03359 * 238.58203 * 2 1 3 18 18 H 1.09001 * 109.47173 * 300.03711 * 1 2 3 19 19 H 1.08999 * 109.46801 * 60.03704 * 1 2 3 20 20 H 1.09000 * 109.47398 * 180.02562 * 1 2 3 21 21 H 1.08995 * 109.47023 * 179.97438 * 3 2 1 22 22 H 1.09002 * 109.47028 * 299.96468 * 3 2 1 23 23 H 1.09000 * 109.47279 * 59.96049 * 3 2 1 24 24 H 1.09006 * 110.48610 * 336.99509 * 4 2 1 25 25 H 1.09000 * 110.59896 * 214.41438 * 4 2 1 26 26 H 1.09004 * 110.75409 * 279.63137 * 5 4 2 27 27 H 1.08997 * 110.91621 * 156.33088 * 5 4 2 28 28 H 1.09004 * 109.46539 * 296.75558 * 7 6 5 29 29 H 1.08990 * 109.47476 * 56.75620 * 7 6 5 30 30 H 1.09003 * 109.46934 * 176.76252 * 7 6 5 31 31 H 0.97006 * 119.99803 * 180.02562 * 12 11 9 32 32 H 1.09001 * 110.03129 * 121.42846 * 17 2 1 33 33 H 1.09001 * 110.02721 * 0.02562 * 17 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0547 1.4373 0.0000 4 6 2.0584 -0.7555 1.2369 5 6 2.3281 -2.1902 0.7192 6 6 2.8875 -1.9407 -0.7034 7 6 2.6836 -3.1757 -1.5832 8 8 4.2725 -1.5945 -0.6426 9 6 5.1114 -2.5140 -0.1215 10 1 4.7258 -3.4608 0.2267 11 6 6.4680 -2.2429 -0.0323 12 7 7.2860 -3.1394 0.4763 13 14 7.1348 -0.6050 -0.6339 14 1 7.1184 0.3758 0.4810 15 1 6.2879 -0.1043 -1.7462 16 1 8.5283 -0.7844 -1.1149 17 6 2.0571 -0.7536 -1.2337 18 1 -0.3633 0.5144 0.8897 19 1 -0.3633 0.5133 -0.8903 20 1 -0.3634 -1.0276 0.0005 21 1 3.1446 1.4261 0.0005 22 1 1.6971 1.9546 -0.8903 23 1 1.6961 1.9550 0.8896 24 1 1.3061 -0.7696 2.0255 25 1 2.9806 -0.3009 1.5989 26 1 1.4030 -2.7651 0.6752 27 1 3.0663 -2.6960 1.3414 28 1 3.2508 -4.0114 -1.1733 29 1 1.6247 -3.4329 -1.6086 30 1 3.0302 -2.9626 -2.5945 31 1 8.2352 -2.9495 0.5391 32 1 2.6867 -0.0954 -1.8324 33 1 1.2229 -1.1189 -1.8326 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260033470.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:43 Heat of formation + Delta-G solvation = -78.917725 kcal Electronic energy + Delta-G solvation = -13591.228330 eV Core-core repulsion = 11422.738143 eV Total energy + Delta-G solvation = -2168.490187 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.62997 -37.50476 -34.17341 -32.78385 -30.54052 -28.11185 -27.77298 -26.37412 -24.25459 -20.82854 -19.79432 -19.15661 -17.58171 -16.32257 -16.00939 -15.12881 -14.93361 -14.54745 -14.43509 -14.02215 -13.84183 -13.69875 -13.35062 -12.96619 -12.88591 -12.46209 -12.35412 -12.16143 -11.97185 -11.84500 -11.47514 -11.32945 -11.23559 -11.12909 -10.81623 -10.24579 -8.20466 -5.85873 1.36288 1.39163 1.57988 2.45720 3.11441 3.38229 3.70766 3.80681 4.06227 4.31554 4.40382 4.49316 4.56884 4.65858 4.69249 4.84851 4.89910 4.96619 4.99871 5.02796 5.10330 5.16422 5.21531 5.22792 5.36438 5.47767 5.49556 5.55402 5.67667 5.78366 6.25541 7.20950 7.96031 8.96008 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.040526 B = 0.012784 C = 0.011304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 690.755575 B = 2189.720818 C = 2476.367011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.067 4.067 3 C -0.137 4.137 4 C -0.105 4.105 5 C -0.142 4.142 6 C 0.105 3.895 7 C -0.157 4.157 8 O -0.334 6.334 9 C -0.325 4.325 10 H 0.051 0.949 11 C -0.023 4.023 12 N -0.960 5.960 13 Si 0.967 3.033 14 H -0.278 1.278 15 H -0.264 1.264 16 H -0.285 1.285 17 C -0.098 4.098 18 H 0.063 0.937 19 H 0.066 0.934 20 H 0.059 0.941 21 H 0.030 0.970 22 H 0.066 0.934 23 H 0.064 0.936 24 H 0.080 0.920 25 H 0.039 0.961 26 H 0.085 0.915 27 H 0.038 0.962 28 H 0.032 0.968 29 H 0.084 0.916 30 H 0.051 0.949 31 H 0.269 0.731 32 H 0.057 0.943 33 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.409 7.253 -2.137 16.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.067 4.067 3 C -0.194 4.194 4 C -0.142 4.142 5 C -0.180 4.180 6 C 0.065 3.935 7 C -0.215 4.215 8 O -0.251 6.251 9 C -0.404 4.404 10 H 0.069 0.931 11 C -0.214 4.214 12 N -0.609 5.609 13 Si 0.792 3.208 14 H -0.203 1.203 15 H -0.189 1.189 16 H -0.211 1.211 17 C -0.135 4.135 18 H 0.082 0.918 19 H 0.085 0.915 20 H 0.078 0.922 21 H 0.049 0.951 22 H 0.085 0.915 23 H 0.083 0.917 24 H 0.098 0.902 25 H 0.057 0.943 26 H 0.104 0.896 27 H 0.057 0.943 28 H 0.052 0.948 29 H 0.103 0.897 30 H 0.070 0.930 31 H 0.078 0.922 32 H 0.076 0.924 33 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -14.221 7.431 -2.192 16.194 hybrid contribution 0.996 -0.138 0.102 1.011 sum -13.225 7.293 -2.090 15.246 Atomic orbital electron populations 1.21841 0.92010 1.02230 1.02473 1.21158 0.96845 0.94953 0.93734 1.21887 0.99745 0.95421 1.02326 1.22349 0.99796 0.94506 0.97575 1.22977 1.00125 0.97834 0.97025 1.22400 0.81972 0.94724 0.94388 1.22213 1.01775 0.97853 0.99641 1.85267 1.15801 1.42236 1.81772 1.20182 0.88831 0.96079 1.35313 0.93106 1.25090 0.95425 1.01795 0.99102 1.69802 1.04141 1.36622 1.50345 0.85231 0.76751 0.79696 0.79084 1.20342 1.18875 1.21066 1.22335 0.98120 0.95346 0.97687 0.91787 0.91510 0.92188 0.95077 0.91468 0.91657 0.90191 0.94256 0.89648 0.94302 0.94848 0.89724 0.93028 0.92183 0.92442 0.88474 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.60 8.15 71.98 0.59 -2.01 16 2 C -0.07 -1.87 0.94 -51.46 -0.05 -1.92 16 3 C -0.14 -3.70 8.16 71.98 0.59 -3.11 16 4 C -0.10 -3.44 5.88 31.67 0.19 -3.26 16 5 C -0.14 -5.32 5.82 31.88 0.19 -5.13 16 6 C 0.10 4.25 0.89 -9.72 -0.01 4.24 16 7 C -0.16 -5.91 8.40 71.98 0.60 -5.30 16 8 O -0.33 -17.59 8.28 -82.01 -0.68 -18.27 16 9 C -0.33 -19.40 8.69 67.91 0.59 -18.81 16 10 H 0.05 3.25 6.70 -2.91 -0.02 3.23 16 11 C -0.02 -1.38 5.49 84.82 0.47 -0.92 16 12 N -0.96 -61.66 13.96 21.61 0.30 -61.36 16 13 Si 0.97 49.32 28.61 68.60 1.96 51.28 16 14 H -0.28 -13.76 7.11 99.48 0.71 -13.05 16 15 H -0.26 -13.27 7.11 99.48 0.71 -12.56 16 16 H -0.28 -13.96 7.11 99.48 0.71 -13.26 16 17 C -0.10 -3.13 5.44 31.32 0.17 -2.96 16 18 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 19 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 20 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 21 H 0.03 1.01 8.14 -2.39 -0.02 0.99 16 22 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 23 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 24 H 0.08 2.18 7.84 -2.38 -0.02 2.16 16 25 H 0.04 1.51 7.86 -2.39 -0.02 1.49 16 26 H 0.09 2.65 8.06 -2.38 -0.02 2.63 16 27 H 0.04 1.74 6.85 -2.39 -0.02 1.73 16 28 H 0.03 1.42 7.05 -2.38 -0.02 1.40 16 29 H 0.08 2.46 8.14 -2.39 -0.02 2.44 16 30 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 31 H 0.27 16.21 8.31 -92.70 -0.77 15.44 16 32 H 0.06 1.99 7.60 -2.39 -0.02 1.98 16 33 H 0.10 2.51 7.37 -2.39 -0.02 2.49 16 Total: -1.00 -68.02 262.80 5.96 -62.06 By element: Atomic # 1 Polarization: 4.42 SS G_CDS: 1.05 Total: 5.47 kcal Atomic # 6 Polarization: -42.50 SS G_CDS: 3.32 Total: -39.18 kcal Atomic # 7 Polarization: -61.66 SS G_CDS: 0.30 Total: -61.36 kcal Atomic # 8 Polarization: -17.59 SS G_CDS: -0.68 Total: -18.27 kcal Atomic # 14 Polarization: 49.32 SS G_CDS: 1.96 Total: 51.28 kcal Total: -68.02 5.96 -62.06 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260033470.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.856 kcal (2) G-P(sol) polarization free energy of solvation -68.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.955 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.062 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds