Wall clock time and date at job start Mon Mar 30 2020 01:50:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 110.43476 * 2 1 4 4 C 1.54887 * 110.48656 * 237.31460 * 2 1 3 5 5 C 1.54887 * 102.75187 * 203.37735 * 4 2 1 6 6 C 1.54268 * 104.19259 * 37.94074 * 5 4 2 7 7 C 1.53001 * 110.07027 * 95.69914 * 6 5 4 8 8 O 1.42895 * 110.03340 * 217.10514 * 6 5 4 9 9 C 1.34930 * 116.99835 * 297.16871 * 8 6 5 10 10 H 1.07992 * 120.00433 * 0.02562 * 9 8 6 11 11 C 1.38642 * 119.99770 * 180.02562 * 9 8 6 12 12 N 1.31584 * 119.99842 * 359.97438 * 11 9 8 13 13 Si 1.86796 * 119.99856 * 180.27942 * 11 9 8 14 14 H 1.48497 * 109.47173 * 179.72381 * 13 11 9 15 15 H 1.48506 * 109.46866 * 299.71917 * 13 11 9 16 16 H 1.48501 * 109.47438 * 59.72037 * 13 11 9 17 17 C 1.53874 * 106.60144 * 336.39220 * 6 5 4 18 18 H 1.09007 * 109.46725 * 297.46117 * 1 2 3 19 19 H 1.08995 * 109.47627 * 57.45545 * 1 2 3 20 20 H 1.09005 * 109.47300 * 177.46327 * 1 2 3 21 21 H 1.08996 * 109.46958 * 182.54540 * 3 2 1 22 22 H 1.09004 * 109.46830 * 302.54166 * 3 2 1 23 23 H 1.09002 * 109.47375 * 62.54197 * 3 2 1 24 24 H 1.09001 * 110.75652 * 321.69463 * 4 2 1 25 25 H 1.09002 * 110.75309 * 84.87437 * 4 2 1 26 26 H 1.09003 * 110.48486 * 279.26706 * 5 4 2 27 27 H 1.08994 * 110.48999 * 156.62034 * 5 4 2 28 28 H 1.09003 * 109.46961 * 182.11947 * 7 6 5 29 29 H 1.09004 * 109.47189 * 302.11515 * 7 6 5 30 30 H 1.08996 * 109.47648 * 62.11997 * 7 6 5 31 31 H 0.97005 * 119.99693 * 180.02562 * 12 11 9 32 32 H 1.09002 * 110.03595 * 119.28437 * 17 6 5 33 33 H 1.08995 * 110.03210 * 240.66822 * 17 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0642 1.4337 0.0000 4 6 2.0721 -0.7835 -1.2212 5 6 3.4907 -1.1989 -0.7585 6 6 3.3166 -1.5395 0.7360 7 6 3.1103 -3.0454 0.9107 8 8 4.4653 -1.1146 1.4719 9 6 5.6421 -1.6967 1.1606 10 1 5.6849 -2.4471 0.3852 11 6 6.7963 -1.3315 1.8362 12 7 6.7442 -0.4168 2.7807 13 14 8.4268 -2.1317 1.3999 14 1 9.5004 -1.5668 2.2563 15 1 8.3346 -3.5969 1.6237 16 1 8.7416 -1.8678 -0.0272 17 6 2.0699 -0.7773 1.2182 18 1 -0.3633 0.4739 0.9119 19 1 -0.3634 0.5528 -0.8662 20 1 -0.3634 -1.0267 -0.0455 21 1 3.1530 1.4157 -0.0456 22 1 1.6730 1.9672 -0.8664 23 1 1.7470 1.9397 0.9119 24 1 1.4580 -1.6619 -1.4201 25 1 2.1219 -0.1417 -2.1007 26 1 4.1897 -0.3717 -0.8823 27 1 3.8316 -2.0738 -1.3120 28 1 2.9509 -3.2704 1.9653 29 1 2.2397 -3.3620 0.3361 30 1 3.9931 -3.5768 0.5553 31 1 7.5519 -0.1610 3.2532 32 1 1.3176 -1.4802 1.5760 33 1 2.3410 -0.0838 2.0142 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260033475.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:45 Heat of formation + Delta-G solvation = -61.037528 kcal Electronic energy + Delta-G solvation = -13479.783176 eV Core-core repulsion = 11312.068332 eV Total energy + Delta-G solvation = -2167.714844 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.02550 -35.63609 -32.06942 -30.68925 -28.76260 -26.96030 -26.21900 -24.35889 -23.05006 -19.01891 -18.32660 -16.80221 -15.64472 -14.60650 -14.23710 -13.82057 -13.48410 -13.05258 -12.84984 -12.42410 -12.03667 -11.83343 -11.44710 -11.39010 -11.08493 -10.98357 -10.85314 -10.50019 -10.38957 -10.21235 -10.04790 -9.90473 -9.79899 -9.29044 -8.75010 -7.87340 -5.86030 -3.47253 3.35354 3.37632 3.40349 4.37815 4.96989 5.16650 5.20242 5.45555 5.66389 5.73762 5.81024 5.90014 5.95257 6.02893 6.08785 6.15211 6.16646 6.25540 6.31316 6.43350 6.53549 6.59651 6.64241 6.71156 6.75399 6.93923 7.02564 7.18371 7.26268 7.60093 8.53450 9.58905 10.30544 11.35347 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.053935 B = 0.010089 C = 0.009676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 519.017161 B = 2774.555682 C = 2893.021243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.069 4.069 3 C -0.135 4.135 4 C -0.113 4.113 5 C -0.138 4.138 6 C 0.118 3.882 7 C -0.161 4.161 8 O -0.281 6.281 9 C -0.347 4.347 10 H 0.061 0.939 11 C 0.020 3.980 12 N -0.892 5.892 13 Si 0.919 3.081 14 H -0.285 1.285 15 H -0.280 1.280 16 H -0.279 1.279 17 C -0.100 4.100 18 H 0.051 0.949 19 H 0.049 0.951 20 H 0.051 0.949 21 H 0.066 0.934 22 H 0.044 0.956 23 H 0.051 0.949 24 H 0.059 0.941 25 H 0.057 0.943 26 H 0.074 0.926 27 H 0.053 0.947 28 H 0.052 0.948 29 H 0.041 0.959 30 H 0.056 0.944 31 H 0.256 0.744 32 H 0.061 0.939 33 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.598 -0.563 -6.218 11.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.069 4.069 3 C -0.192 4.192 4 C -0.150 4.150 5 C -0.176 4.176 6 C 0.077 3.923 7 C -0.218 4.218 8 O -0.196 6.196 9 C -0.426 4.426 10 H 0.079 0.921 11 C -0.178 4.178 12 N -0.536 5.536 13 Si 0.746 3.254 14 H -0.210 1.210 15 H -0.206 1.206 16 H -0.205 1.205 17 C -0.138 4.138 18 H 0.071 0.929 19 H 0.068 0.932 20 H 0.070 0.930 21 H 0.085 0.915 22 H 0.064 0.936 23 H 0.070 0.930 24 H 0.078 0.922 25 H 0.076 0.924 26 H 0.093 0.907 27 H 0.072 0.928 28 H 0.071 0.929 29 H 0.060 0.940 30 H 0.075 0.925 31 H 0.066 0.934 32 H 0.079 0.921 33 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -9.498 -0.339 -5.952 11.214 hybrid contribution 0.925 -0.675 -0.399 1.212 sum -8.573 -1.013 -6.351 10.717 Atomic orbital electron populations 1.21825 0.95219 1.01142 1.01084 1.21325 0.94168 0.95625 0.95759 1.21791 1.02238 0.94657 1.00503 1.22529 0.97053 0.98787 0.96669 1.22953 0.95938 1.01143 0.97579 1.21737 0.88437 0.91888 0.90222 1.22345 1.00360 0.98039 1.01086 1.85762 1.12866 1.62532 1.58460 1.20653 0.84392 1.19405 1.18191 0.92131 1.24898 0.97699 0.97944 0.97236 1.70009 1.27708 1.31569 1.24280 0.86141 0.82467 0.78823 0.77939 1.21008 1.20570 1.20539 1.22179 0.95423 0.98753 0.97398 0.92944 0.93185 0.92985 0.91541 0.93645 0.92985 0.92245 0.92418 0.90692 0.92779 0.92886 0.93975 0.92499 0.93402 0.92077 0.90669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.74 8.46 37.16 0.31 -1.43 16 2 C -0.07 -1.09 0.90 -152.85 -0.14 -1.22 16 3 C -0.13 -2.15 8.40 37.16 0.31 -1.84 16 4 C -0.11 -1.78 5.81 -24.74 -0.14 -1.93 16 5 C -0.14 -2.72 4.99 -25.07 -0.13 -2.84 16 6 C 0.12 2.58 1.03 -89.50 -0.09 2.49 16 7 C -0.16 -3.22 8.05 37.16 0.30 -2.92 16 8 O -0.28 -7.97 9.33 -16.51 -0.15 -8.13 16 9 C -0.35 -10.08 8.56 30.88 0.26 -9.82 16 10 H 0.06 1.67 6.71 -52.49 -0.35 1.32 16 11 C 0.02 0.58 5.49 -17.51 -0.10 0.49 16 12 N -0.89 -28.21 13.68 55.48 0.76 -27.45 16 13 Si 0.92 22.40 29.55 -169.99 -5.02 17.38 16 14 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 15 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 16 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 17 C -0.10 -1.89 5.40 -25.61 -0.14 -2.02 16 18 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 19 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 20 H 0.05 0.63 8.12 -51.93 -0.42 0.21 16 21 H 0.07 1.23 7.34 -51.93 -0.38 0.85 16 22 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 23 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 24 H 0.06 0.86 8.04 -51.93 -0.42 0.44 16 25 H 0.06 0.84 8.05 -51.93 -0.42 0.42 16 26 H 0.07 1.63 7.57 -51.93 -0.39 1.24 16 27 H 0.05 1.03 7.84 -51.93 -0.41 0.62 16 28 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 29 H 0.04 0.71 8.14 -51.93 -0.42 0.28 16 30 H 0.06 1.19 6.88 -51.93 -0.36 0.83 16 31 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 32 H 0.06 1.04 7.37 -51.93 -0.38 0.66 16 33 H 0.07 1.57 7.66 -51.93 -0.40 1.17 16 LS Contribution 263.72 15.07 3.97 3.97 Total: -1.00 -31.68 263.72 -5.59 -37.27 By element: Atomic # 1 Polarization: 3.60 SS G_CDS: -5.60 Total: -2.00 kcal Atomic # 6 Polarization: -21.50 SS G_CDS: 0.46 Total: -21.05 kcal Atomic # 7 Polarization: -28.21 SS G_CDS: 0.76 Total: -27.45 kcal Atomic # 8 Polarization: -7.97 SS G_CDS: -0.15 Total: -8.13 kcal Atomic # 14 Polarization: 22.40 SS G_CDS: -5.02 Total: 17.38 kcal Total LS contribution 3.97 Total: 3.97 kcal Total: -31.68 -5.59 -37.27 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260033475.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.766 kcal (2) G-P(sol) polarization free energy of solvation -31.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.272 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.038 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds