Wall clock time and date at job start Mon Mar 30 2020 01:50:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 110.43476 * 2 1 4 4 C 1.54887 * 110.48656 * 237.31460 * 2 1 3 5 5 C 1.54887 * 102.75187 * 203.37735 * 4 2 1 6 6 C 1.54268 * 104.19259 * 37.94074 * 5 4 2 7 7 C 1.53001 * 110.07027 * 95.69914 * 6 5 4 8 8 O 1.42895 * 110.03340 * 217.10514 * 6 5 4 9 9 C 1.34930 * 116.99835 * 297.16871 * 8 6 5 10 10 H 1.07992 * 120.00433 * 0.02562 * 9 8 6 11 11 C 1.38642 * 119.99770 * 180.02562 * 9 8 6 12 12 N 1.31584 * 119.99842 * 359.97438 * 11 9 8 13 13 Si 1.86796 * 119.99856 * 180.27942 * 11 9 8 14 14 H 1.48497 * 109.47173 * 179.72381 * 13 11 9 15 15 H 1.48506 * 109.46866 * 299.71917 * 13 11 9 16 16 H 1.48501 * 109.47438 * 59.72037 * 13 11 9 17 17 C 1.53874 * 106.60144 * 336.39220 * 6 5 4 18 18 H 1.09007 * 109.46725 * 297.46117 * 1 2 3 19 19 H 1.08995 * 109.47627 * 57.45545 * 1 2 3 20 20 H 1.09005 * 109.47300 * 177.46327 * 1 2 3 21 21 H 1.08996 * 109.46958 * 182.54540 * 3 2 1 22 22 H 1.09004 * 109.46830 * 302.54166 * 3 2 1 23 23 H 1.09002 * 109.47375 * 62.54197 * 3 2 1 24 24 H 1.09001 * 110.75652 * 321.69463 * 4 2 1 25 25 H 1.09002 * 110.75309 * 84.87437 * 4 2 1 26 26 H 1.09003 * 110.48486 * 279.26706 * 5 4 2 27 27 H 1.08994 * 110.48999 * 156.62034 * 5 4 2 28 28 H 1.09003 * 109.46961 * 182.11947 * 7 6 5 29 29 H 1.09004 * 109.47189 * 302.11515 * 7 6 5 30 30 H 1.08996 * 109.47648 * 62.11997 * 7 6 5 31 31 H 0.97005 * 119.99693 * 180.02562 * 12 11 9 32 32 H 1.09002 * 110.03595 * 119.28437 * 17 6 5 33 33 H 1.08995 * 110.03210 * 240.66822 * 17 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0642 1.4337 0.0000 4 6 2.0721 -0.7835 -1.2212 5 6 3.4907 -1.1989 -0.7585 6 6 3.3166 -1.5395 0.7360 7 6 3.1103 -3.0454 0.9107 8 8 4.4653 -1.1146 1.4719 9 6 5.6421 -1.6967 1.1606 10 1 5.6849 -2.4471 0.3852 11 6 6.7963 -1.3315 1.8362 12 7 6.7442 -0.4168 2.7807 13 14 8.4268 -2.1317 1.3999 14 1 9.5004 -1.5668 2.2563 15 1 8.3346 -3.5969 1.6237 16 1 8.7416 -1.8678 -0.0272 17 6 2.0699 -0.7773 1.2182 18 1 -0.3633 0.4739 0.9119 19 1 -0.3634 0.5528 -0.8662 20 1 -0.3634 -1.0267 -0.0455 21 1 3.1530 1.4157 -0.0456 22 1 1.6730 1.9672 -0.8664 23 1 1.7470 1.9397 0.9119 24 1 1.4580 -1.6619 -1.4201 25 1 2.1219 -0.1417 -2.1007 26 1 4.1897 -0.3717 -0.8823 27 1 3.8316 -2.0738 -1.3120 28 1 2.9509 -3.2704 1.9653 29 1 2.2397 -3.3620 0.3361 30 1 3.9931 -3.5768 0.5553 31 1 7.5519 -0.1610 3.2532 32 1 1.3176 -1.4802 1.5760 33 1 2.3410 -0.0838 2.0142 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260033475.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:44 Heat of formation + Delta-G solvation = -80.762271 kcal Electronic energy + Delta-G solvation = -13480.638505 eV Core-core repulsion = 11312.068332 eV Total energy + Delta-G solvation = -2168.570173 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.57946 -37.44785 -34.04961 -32.49566 -30.26800 -28.15180 -27.80000 -26.47165 -24.49236 -20.80135 -19.72016 -18.82497 -17.54990 -16.18113 -15.94189 -15.35104 -14.94226 -14.78661 -14.48697 -13.83254 -13.58237 -13.28506 -13.19361 -12.91325 -12.82829 -12.57503 -12.40604 -12.23372 -12.06045 -11.85424 -11.42086 -11.34377 -11.21870 -11.09160 -10.67909 -10.03455 -8.10375 -5.75705 1.37737 1.44865 1.51478 2.35794 3.21334 3.56095 3.80862 3.83677 4.16486 4.36032 4.39988 4.46638 4.54992 4.65465 4.70568 4.82905 4.90485 4.96250 5.03436 5.06973 5.09903 5.16612 5.19445 5.24285 5.35432 5.37184 5.49010 5.59530 5.62780 5.68446 6.29896 7.34792 8.21492 9.15136 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.053935 B = 0.010089 C = 0.009676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 519.017161 B = 2774.555682 C = 2893.021243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.066 4.066 3 C -0.134 4.134 4 C -0.101 4.101 5 C -0.136 4.136 6 C 0.096 3.904 7 C -0.153 4.153 8 O -0.326 6.326 9 C -0.347 4.347 10 H 0.069 0.931 11 C -0.051 4.051 12 N -0.945 5.945 13 Si 0.994 3.006 14 H -0.282 1.282 15 H -0.266 1.266 16 H -0.267 1.267 17 C -0.099 4.099 18 H 0.055 0.945 19 H 0.070 0.930 20 H 0.065 0.935 21 H 0.027 0.973 22 H 0.073 0.927 23 H 0.051 0.949 24 H 0.084 0.916 25 H 0.076 0.924 26 H 0.041 0.959 27 H 0.057 0.943 28 H 0.042 0.958 29 H 0.081 0.919 30 H 0.041 0.959 31 H 0.256 0.744 32 H 0.082 0.918 33 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.037 -1.565 -7.979 13.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.066 4.066 3 C -0.191 4.191 4 C -0.138 4.138 5 C -0.174 4.174 6 C 0.056 3.944 7 C -0.211 4.211 8 O -0.243 6.243 9 C -0.426 4.426 10 H 0.086 0.914 11 C -0.242 4.242 12 N -0.591 5.591 13 Si 0.818 3.182 14 H -0.207 1.207 15 H -0.191 1.191 16 H -0.192 1.192 17 C -0.137 4.137 18 H 0.074 0.926 19 H 0.089 0.911 20 H 0.084 0.916 21 H 0.046 0.954 22 H 0.092 0.908 23 H 0.070 0.930 24 H 0.103 0.897 25 H 0.094 0.906 26 H 0.060 0.940 27 H 0.076 0.924 28 H 0.061 0.939 29 H 0.100 0.900 30 H 0.060 0.940 31 H 0.064 0.936 32 H 0.101 0.899 33 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -10.966 -1.356 -7.737 13.489 hybrid contribution 1.281 -0.352 0.140 1.336 sum -9.685 -1.708 -7.597 12.427 Atomic orbital electron populations 1.21770 0.92014 1.02515 1.02308 1.21345 0.96565 0.94600 0.94058 1.21781 0.99775 0.95718 1.01834 1.22515 0.94218 1.00039 0.97040 1.22838 0.98178 1.00060 0.96279 1.22284 0.87346 0.93538 0.91214 1.22270 1.01364 0.96386 1.01080 1.85699 1.14278 1.63784 1.60491 1.21052 0.85084 1.18800 1.17666 0.91381 1.26096 1.01983 0.98837 0.97311 1.70198 1.28834 1.33905 1.26166 0.84974 0.76941 0.78201 0.78129 1.20738 1.19090 1.19159 1.22240 0.94740 0.98678 0.98035 0.92589 0.91122 0.91628 0.95419 0.90822 0.93017 0.89708 0.90574 0.94020 0.92410 0.93874 0.90036 0.93986 0.93553 0.89948 0.93873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.78 8.46 71.98 0.61 -2.17 16 2 C -0.07 -1.93 0.90 -51.11 -0.05 -1.98 16 3 C -0.13 -4.18 8.40 71.98 0.60 -3.57 16 4 C -0.10 -2.88 5.81 31.88 0.19 -2.69 16 5 C -0.14 -5.27 4.99 31.67 0.16 -5.11 16 6 C 0.10 4.20 1.03 -10.07 -0.01 4.19 16 7 C -0.15 -5.99 8.05 71.98 0.58 -5.41 16 8 O -0.33 -19.25 9.33 -81.99 -0.77 -20.01 16 9 C -0.35 -20.66 8.56 67.92 0.58 -20.08 16 10 H 0.07 3.81 6.71 -2.91 -0.02 3.79 16 11 C -0.05 -3.06 5.49 84.83 0.47 -2.59 16 12 N -0.94 -61.97 13.68 21.61 0.30 -61.68 16 13 Si 0.99 46.62 29.55 68.60 2.03 48.65 16 14 H -0.28 -12.97 7.11 99.48 0.71 -12.27 16 15 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 16 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 17 C -0.10 -3.70 5.40 31.32 0.17 -3.53 16 18 H 0.06 1.18 8.14 -2.38 -0.02 1.16 16 19 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 20 H 0.06 1.26 8.12 -2.38 -0.02 1.24 16 21 H 0.03 1.05 7.34 -2.39 -0.02 1.03 16 22 H 0.07 1.85 8.14 -2.38 -0.02 1.83 16 23 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 24 H 0.08 2.04 8.04 -2.39 -0.02 2.02 16 25 H 0.08 1.93 8.05 -2.39 -0.02 1.91 16 26 H 0.04 1.87 7.57 -2.39 -0.02 1.85 16 27 H 0.06 2.14 7.84 -2.39 -0.02 2.12 16 28 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 29 H 0.08 2.49 8.14 -2.38 -0.02 2.47 16 30 H 0.04 1.73 6.88 -2.39 -0.02 1.71 16 31 H 0.26 15.76 8.31 -92.70 -0.77 14.99 16 32 H 0.08 2.65 7.37 -2.39 -0.02 2.63 16 33 H 0.04 1.86 7.66 -2.39 -0.02 1.84 16 Total: -1.00 -71.20 263.72 5.90 -65.30 By element: Atomic # 1 Polarization: 9.64 SS G_CDS: 1.05 Total: 10.69 kcal Atomic # 6 Polarization: -46.24 SS G_CDS: 3.30 Total: -42.95 kcal Atomic # 7 Polarization: -61.97 SS G_CDS: 0.30 Total: -61.68 kcal Atomic # 8 Polarization: -19.25 SS G_CDS: -0.77 Total: -20.01 kcal Atomic # 14 Polarization: 46.62 SS G_CDS: 2.03 Total: 48.65 kcal Total: -71.20 5.90 -65.30 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260033475.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.464 kcal (2) G-P(sol) polarization free energy of solvation -71.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.298 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds