Wall clock time and date at job start Mon Mar 30 2020 02:29:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.47610 * 2 1 4 4 C 1.50704 * 109.46865 * 240.00152 * 2 1 3 5 5 H 1.07998 * 120.00080 * 239.99894 * 4 2 1 6 6 C 1.37876 * 119.99703 * 60.00028 * 4 2 1 7 7 N 1.31515 * 120.00474 * 359.97438 * 6 4 2 8 8 Si 1.86804 * 119.99968 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47024 * 0.02562 * 8 6 4 10 10 H 1.48499 * 109.46868 * 119.99863 * 8 6 4 11 11 H 1.48497 * 109.47209 * 240.00489 * 8 6 4 12 12 C 1.53007 * 109.47335 * 120.00575 * 2 1 3 13 13 H 1.09004 * 109.05279 * 60.89204 * 12 2 1 14 14 C 1.53466 * 109.10907 * 301.79479 * 12 2 1 15 15 C 1.54156 * 111.65461 * 198.77193 * 14 12 2 16 16 C 1.50976 * 112.81158 * 318.38775 * 15 14 12 17 17 C 1.54620 * 109.21200 * 92.33280 * 16 15 14 18 18 O 1.36320 * 111.08803 * 285.33955 * 17 16 15 19 19 C 1.43395 * 118.03037 * 61.88392 * 18 17 16 20 20 H 1.08994 * 109.47191 * 179.97438 * 1 2 3 21 21 H 1.09005 * 109.46785 * 299.99782 * 1 2 3 22 22 H 1.08991 * 109.46941 * 59.99246 * 1 2 3 23 23 H 0.97000 * 120.00364 * 179.97438 * 7 6 4 24 24 H 1.09003 * 109.04256 * 78.21249 * 14 12 2 25 25 H 1.08998 * 109.04695 * 319.33347 * 14 12 2 26 26 H 1.09002 * 108.80906 * 197.52830 * 15 14 12 27 27 H 1.08997 * 108.72448 * 79.19156 * 15 14 12 28 28 H 1.09001 * 109.51364 * 332.40936 * 16 15 14 29 29 H 1.09007 * 109.51124 * 212.25237 * 16 15 14 30 30 H 1.09003 * 109.15546 * 164.93183 * 17 16 15 31 31 H 1.09002 * 109.11728 * 45.73045 * 17 16 15 32 32 H 1.09000 * 109.86156 * 35.85317 * 19 18 17 33 33 H 1.08999 * 109.86194 * 156.87611 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1315 6 6 1.6991 -0.2393 -2.4827 7 7 0.9427 0.8298 -2.6034 8 14 2.3223 -1.1194 -4.0081 9 1 3.1472 -2.2862 -3.6040 10 1 1.1675 -1.5863 -4.8165 11 1 3.1471 -0.1856 -4.8161 12 6 2.0401 -0.7214 1.2492 13 1 1.6862 -1.7523 1.2342 14 6 1.4873 -0.0183 2.4963 15 6 2.2997 -0.3742 3.7571 16 6 2.6701 -1.8364 3.8214 17 6 4.0609 -2.0379 3.1765 18 8 3.9882 -1.9546 1.8178 19 6 3.5508 -0.7168 1.2410 20 1 -0.3633 -1.0276 -0.0005 21 1 -0.3633 0.5138 0.8901 22 1 -0.3633 0.5139 -0.8899 23 1 0.7086 1.1614 -3.4844 24 1 0.4504 -0.3201 2.6444 25 1 1.5239 1.0601 2.3423 26 1 1.7097 -0.1219 4.6382 27 1 3.2131 0.2205 3.7642 28 1 1.9289 -2.4239 3.2795 29 1 2.7012 -2.1587 4.8623 30 1 4.4453 -3.0192 3.4546 31 1 4.7403 -1.2699 3.5461 32 1 3.9216 0.1195 1.8337 33 1 3.9152 -0.6362 0.2169 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260339943.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:11 Heat of formation + Delta-G solvation = -70.172232 kcal Electronic energy + Delta-G solvation = -13483.683633 eV Core-core repulsion = 11315.572679 eV Total energy + Delta-G solvation = -2168.110954 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.33038 -35.55316 -33.61702 -31.82252 -28.96063 -26.53045 -24.98386 -24.34159 -21.42110 -20.54759 -18.28856 -16.35614 -15.90738 -15.69207 -14.79840 -14.47980 -13.97013 -13.16769 -12.70002 -12.62598 -12.26317 -11.88120 -11.39133 -10.99396 -10.84519 -10.65675 -10.40873 -10.22732 -10.20292 -10.00234 -9.89778 -9.58656 -9.21749 -8.73656 -8.51540 -8.27268 -5.93309 -3.98940 3.33289 3.41589 3.47139 4.43049 4.49214 5.10373 5.28830 5.33160 5.37512 5.62650 5.67389 5.78975 5.96043 6.15129 6.16404 6.26070 6.34415 6.43787 6.54579 6.68005 6.87837 6.90118 7.03230 7.17136 7.29317 7.44541 7.80296 8.02239 8.20453 8.24385 8.52265 9.06041 9.65916 11.12377 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.047154 B = 0.010866 C = 0.009303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 593.660934 B = 2576.218538 C = 3008.921709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.048 3.952 3 H 0.024 0.976 4 C -0.510 4.510 5 H 0.060 0.940 6 C 0.060 3.940 7 N -0.891 5.891 8 Si 0.887 3.113 9 H -0.272 1.272 10 H -0.286 1.286 11 H -0.285 1.285 12 C -0.107 4.107 13 H 0.067 0.933 14 C -0.114 4.114 15 C -0.122 4.122 16 C -0.163 4.163 17 C 0.081 3.919 18 O -0.389 6.389 19 C 0.076 3.924 20 H 0.023 0.977 21 H 0.008 0.992 22 H 0.080 0.920 23 H 0.258 0.742 24 H 0.055 0.945 25 H 0.057 0.943 26 H 0.051 0.949 27 H 0.053 0.947 28 H 0.073 0.927 29 H 0.060 0.940 30 H 0.079 0.921 31 H 0.026 0.974 32 H 0.038 0.962 33 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.047 -2.348 9.974 10.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.030 3.970 3 H 0.042 0.958 4 C -0.548 4.548 5 H 0.078 0.922 6 C -0.141 4.141 7 N -0.531 5.531 8 Si 0.715 3.285 9 H -0.197 1.197 10 H -0.212 1.212 11 H -0.212 1.212 12 C -0.126 4.126 13 H 0.086 0.914 14 C -0.151 4.151 15 C -0.160 4.160 16 C -0.201 4.201 17 C 0.002 3.998 18 O -0.308 6.308 19 C 0.002 3.998 20 H 0.042 0.958 21 H 0.027 0.973 22 H 0.098 0.902 23 H 0.068 0.932 24 H 0.074 0.926 25 H 0.075 0.925 26 H 0.070 0.930 27 H 0.071 0.929 28 H 0.092 0.908 29 H 0.079 0.921 30 H 0.097 0.903 31 H 0.044 0.956 32 H 0.056 0.944 33 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 3.010 -2.373 9.725 10.453 hybrid contribution 0.044 -0.133 -0.602 0.618 sum 3.055 -2.505 9.123 9.942 Atomic orbital electron populations 1.21815 0.98883 0.98778 0.99922 1.18721 0.92577 0.95351 0.90361 0.95813 1.21322 1.30743 1.12253 0.90491 0.92154 1.24976 0.95165 0.94995 0.98964 1.69907 1.37024 1.23126 1.23029 0.86606 0.78652 0.79853 0.83354 1.19650 1.21199 1.21166 1.21616 0.94914 1.00527 0.95511 0.91419 1.21998 0.98836 1.00382 0.93897 1.21486 1.00066 0.96006 0.98415 1.22304 0.99622 0.97537 1.00607 1.21641 0.94493 1.00383 0.83283 1.86353 1.87035 1.37900 1.19482 1.22780 0.94776 0.83374 0.98885 0.95814 0.97327 0.90179 0.93237 0.92624 0.92450 0.92988 0.92856 0.90781 0.92134 0.90258 0.95591 0.94410 0.86973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.32 8.62 37.16 0.32 -3.00 16 2 C 0.05 1.19 1.76 -91.76 -0.16 1.03 16 3 H 0.02 0.63 8.14 -51.93 -0.42 0.21 16 4 C -0.51 -13.88 7.35 -34.44 -0.25 -14.13 16 5 H 0.06 1.65 7.13 -52.49 -0.37 1.28 16 6 C 0.06 1.66 5.30 -17.82 -0.09 1.56 16 7 N -0.89 -25.62 11.32 55.43 0.63 -24.99 16 8 Si 0.89 21.50 29.54 -169.99 -5.02 16.48 16 9 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 10 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 11 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 12 C -0.11 -2.22 1.34 -91.34 -0.12 -2.34 16 13 H 0.07 1.50 7.31 -51.93 -0.38 1.12 16 14 C -0.11 -2.01 4.31 -25.89 -0.11 -2.12 16 15 C -0.12 -1.81 5.31 -27.14 -0.14 -1.96 16 16 C -0.16 -2.33 5.67 -26.90 -0.15 -2.48 16 17 C 0.08 1.21 6.39 38.01 0.24 1.45 16 18 O -0.39 -7.38 9.91 -20.77 -0.21 -7.59 16 19 C 0.08 1.51 5.72 36.19 0.21 1.72 16 20 H 0.02 0.56 8.14 -51.93 -0.42 0.13 16 21 H 0.01 0.17 6.80 -51.93 -0.35 -0.18 16 22 H 0.08 2.16 6.07 -51.93 -0.32 1.84 16 23 H 0.26 7.07 8.31 -40.82 -0.34 6.74 16 24 H 0.05 0.98 7.44 -51.93 -0.39 0.59 16 25 H 0.06 1.03 7.97 -51.93 -0.41 0.62 16 26 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.05 0.77 6.59 -51.93 -0.34 0.43 16 28 H 0.07 1.17 7.16 -51.93 -0.37 0.80 16 29 H 0.06 0.72 8.14 -51.92 -0.42 0.30 16 30 H 0.08 1.04 8.14 -51.93 -0.42 0.61 16 31 H 0.03 0.37 7.68 -51.93 -0.40 -0.03 16 32 H 0.04 0.68 6.67 -51.93 -0.35 0.34 16 33 H 0.11 2.45 6.29 -51.93 -0.33 2.12 16 LS Contribution 249.99 15.07 3.77 3.77 Total: -1.00 -28.19 249.99 -6.36 -34.55 By element: Atomic # 1 Polarization: 3.31 SS G_CDS: -5.26 Total: -1.94 kcal Atomic # 6 Polarization: -20.00 SS G_CDS: -0.27 Total: -20.27 kcal Atomic # 7 Polarization: -25.62 SS G_CDS: 0.63 Total: -24.99 kcal Atomic # 8 Polarization: -7.38 SS G_CDS: -0.21 Total: -7.59 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 3.77 Total: 3.77 kcal Total: -28.19 -6.36 -34.55 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260339943.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.623 kcal (2) G-P(sol) polarization free energy of solvation -28.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.549 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds