Wall clock time and date at job start Mon Mar 30 2020 02:29:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.47610 * 2 1 4 4 C 1.50704 * 109.46865 * 240.00152 * 2 1 3 5 5 H 1.07998 * 120.00080 * 239.99894 * 4 2 1 6 6 C 1.37876 * 119.99703 * 60.00028 * 4 2 1 7 7 N 1.31515 * 120.00474 * 359.97438 * 6 4 2 8 8 Si 1.86804 * 119.99968 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47024 * 0.02562 * 8 6 4 10 10 H 1.48499 * 109.46868 * 119.99863 * 8 6 4 11 11 H 1.48497 * 109.47209 * 240.00489 * 8 6 4 12 12 C 1.53007 * 109.47335 * 120.00575 * 2 1 3 13 13 H 1.09004 * 109.05279 * 60.89204 * 12 2 1 14 14 C 1.53466 * 109.10907 * 301.79479 * 12 2 1 15 15 C 1.54156 * 111.65461 * 198.77193 * 14 12 2 16 16 C 1.50976 * 112.81158 * 318.38775 * 15 14 12 17 17 C 1.54620 * 109.21200 * 92.33280 * 16 15 14 18 18 O 1.36320 * 111.08803 * 285.33955 * 17 16 15 19 19 C 1.43395 * 118.03037 * 61.88392 * 18 17 16 20 20 H 1.08994 * 109.47191 * 179.97438 * 1 2 3 21 21 H 1.09005 * 109.46785 * 299.99782 * 1 2 3 22 22 H 1.08991 * 109.46941 * 59.99246 * 1 2 3 23 23 H 0.97000 * 120.00364 * 179.97438 * 7 6 4 24 24 H 1.09003 * 109.04256 * 78.21249 * 14 12 2 25 25 H 1.08998 * 109.04695 * 319.33347 * 14 12 2 26 26 H 1.09002 * 108.80906 * 197.52830 * 15 14 12 27 27 H 1.08997 * 108.72448 * 79.19156 * 15 14 12 28 28 H 1.09001 * 109.51364 * 332.40936 * 16 15 14 29 29 H 1.09007 * 109.51124 * 212.25237 * 16 15 14 30 30 H 1.09003 * 109.15546 * 164.93183 * 17 16 15 31 31 H 1.09002 * 109.11728 * 45.73045 * 17 16 15 32 32 H 1.09000 * 109.86156 * 35.85317 * 19 18 17 33 33 H 1.08999 * 109.86194 * 156.87611 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1315 6 6 1.6991 -0.2393 -2.4827 7 7 0.9427 0.8298 -2.6034 8 14 2.3223 -1.1194 -4.0081 9 1 3.1472 -2.2862 -3.6040 10 1 1.1675 -1.5863 -4.8165 11 1 3.1471 -0.1856 -4.8161 12 6 2.0401 -0.7214 1.2492 13 1 1.6862 -1.7523 1.2342 14 6 1.4873 -0.0183 2.4963 15 6 2.2997 -0.3742 3.7571 16 6 2.6701 -1.8364 3.8214 17 6 4.0609 -2.0379 3.1765 18 8 3.9882 -1.9546 1.8178 19 6 3.5508 -0.7168 1.2410 20 1 -0.3633 -1.0276 -0.0005 21 1 -0.3633 0.5138 0.8901 22 1 -0.3633 0.5139 -0.8899 23 1 0.7086 1.1614 -3.4844 24 1 0.4504 -0.3201 2.6444 25 1 1.5239 1.0601 2.3423 26 1 1.7097 -0.1219 4.6382 27 1 3.2131 0.2205 3.7642 28 1 1.9289 -2.4239 3.2795 29 1 2.7012 -2.1587 4.8623 30 1 4.4453 -3.0192 3.4546 31 1 4.7403 -1.2699 3.5461 32 1 3.9216 0.1195 1.8337 33 1 3.9152 -0.6362 0.2169 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260339943.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:10 Heat of formation + Delta-G solvation = -86.104324 kcal Electronic energy + Delta-G solvation = -13484.374501 eV Core-core repulsion = 11315.572679 eV Total energy + Delta-G solvation = -2168.801821 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.76040 -37.27899 -35.13758 -33.61686 -30.69747 -28.15842 -26.75595 -25.92498 -22.93273 -22.16224 -19.86495 -18.39272 -17.33458 -17.13848 -16.52577 -16.04298 -15.52146 -14.65106 -14.45321 -14.17338 -13.89649 -13.37168 -13.05755 -12.89596 -12.61385 -12.49967 -12.11769 -11.97141 -11.87932 -11.53483 -11.31228 -11.10226 -10.94898 -10.62111 -10.38477 -10.11543 -8.05842 -6.17765 1.39788 1.42574 1.54112 2.45350 3.04849 3.23236 3.91782 4.06950 4.11417 4.21407 4.28082 4.54788 4.60963 4.75405 4.78329 4.90774 4.98041 5.05330 5.09230 5.15853 5.29294 5.31793 5.36287 5.43500 5.53822 5.58064 5.68095 6.01279 6.16991 6.43498 6.86556 6.93992 7.49845 8.98791 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.047154 B = 0.010866 C = 0.009303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 593.660934 B = 2576.218538 C = 3008.921709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.046 3.954 3 H -0.001 1.001 4 C -0.521 4.521 5 H 0.052 0.948 6 C 0.011 3.989 7 N -0.919 5.919 8 Si 0.948 3.052 9 H -0.269 1.269 10 H -0.283 1.283 11 H -0.280 1.280 12 C -0.096 4.096 13 H 0.050 0.950 14 C -0.111 4.111 15 C -0.118 4.118 16 C -0.159 4.159 17 C 0.067 3.933 18 O -0.407 6.407 19 C 0.083 3.917 20 H 0.020 0.980 21 H 0.032 0.968 22 H 0.051 0.949 23 H 0.259 0.741 24 H 0.056 0.944 25 H 0.052 0.948 26 H 0.076 0.924 27 H 0.059 0.941 28 H 0.055 0.945 29 H 0.092 0.908 30 H 0.102 0.898 31 H 0.041 0.959 32 H 0.055 0.945 33 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.617 -2.932 11.470 12.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.027 3.973 3 H 0.017 0.983 4 C -0.559 4.559 5 H 0.070 0.930 6 C -0.187 4.187 7 N -0.559 5.559 8 Si 0.774 3.226 9 H -0.194 1.194 10 H -0.209 1.209 11 H -0.206 1.206 12 C -0.115 4.115 13 H 0.069 0.931 14 C -0.149 4.149 15 C -0.156 4.156 16 C -0.197 4.197 17 C -0.011 4.011 18 O -0.326 6.326 19 C 0.008 3.992 20 H 0.039 0.961 21 H 0.051 0.949 22 H 0.070 0.930 23 H 0.068 0.932 24 H 0.075 0.925 25 H 0.071 0.929 26 H 0.094 0.906 27 H 0.077 0.923 28 H 0.074 0.926 29 H 0.111 0.889 30 H 0.120 0.880 31 H 0.059 0.941 32 H 0.074 0.926 33 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 3.585 -2.963 11.233 12.158 hybrid contribution -0.123 0.034 -1.021 1.029 sum 3.462 -2.929 10.213 11.174 Atomic orbital electron populations 1.21666 0.98678 0.98404 0.99700 1.18695 0.92754 0.94121 0.91716 0.98325 1.21590 1.30470 1.12049 0.91812 0.92960 1.25701 0.95496 0.95754 1.01763 1.70026 1.37972 1.24272 1.23618 0.85658 0.78143 0.78837 0.79967 1.19359 1.20868 1.20613 1.21435 0.95640 0.99165 0.95221 0.93125 1.21937 0.99349 0.99632 0.93933 1.21460 1.00173 0.96533 0.97397 1.22274 0.98376 0.96851 1.02187 1.21984 0.95537 1.02246 0.81324 1.86323 1.87089 1.37157 1.21996 1.22501 0.93938 0.84678 0.98051 0.96101 0.94877 0.92989 0.93203 0.92548 0.92887 0.90554 0.92260 0.92584 0.88912 0.88029 0.94055 0.92628 0.89874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.24 8.62 71.98 0.62 -5.62 16 2 C 0.05 2.29 1.76 -11.54 -0.02 2.27 16 3 H 0.00 -0.08 8.14 -2.39 -0.02 -0.09 16 4 C -0.52 -28.93 7.35 25.60 0.19 -28.74 16 5 H 0.05 2.92 7.13 -2.91 -0.02 2.90 16 6 C 0.01 0.61 5.30 84.65 0.45 1.06 16 7 N -0.92 -53.73 11.32 21.45 0.24 -53.49 16 8 Si 0.95 44.59 29.54 68.60 2.03 46.61 16 9 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 10 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 11 H -0.28 -12.88 7.11 99.48 0.71 -12.18 16 12 C -0.10 -3.96 1.34 -11.26 -0.02 -3.98 16 13 H 0.05 2.25 7.31 -2.38 -0.02 2.23 16 14 C -0.11 -3.75 4.31 31.14 0.13 -3.62 16 15 C -0.12 -3.12 5.31 30.33 0.16 -2.96 16 16 C -0.16 -4.03 5.67 30.49 0.17 -3.86 16 17 C 0.07 1.81 6.39 72.53 0.46 2.28 16 18 O -0.41 -14.92 9.91 -97.22 -0.96 -15.88 16 19 C 0.08 3.27 5.72 71.35 0.41 3.68 16 20 H 0.02 0.98 8.14 -2.39 -0.02 0.96 16 21 H 0.03 1.41 6.80 -2.38 -0.02 1.40 16 22 H 0.05 2.85 6.07 -2.39 -0.01 2.83 16 23 H 0.26 14.41 8.31 -92.71 -0.77 13.64 16 24 H 0.06 1.88 7.44 -2.39 -0.02 1.86 16 25 H 0.05 1.83 7.97 -2.39 -0.02 1.81 16 26 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 27 H 0.06 1.51 6.59 -2.39 -0.02 1.49 16 28 H 0.06 1.64 7.16 -2.39 -0.02 1.62 16 29 H 0.09 1.78 8.14 -2.38 -0.02 1.76 16 30 H 0.10 2.32 8.14 -2.39 -0.02 2.30 16 31 H 0.04 1.02 7.68 -2.39 -0.02 1.00 16 32 H 0.06 1.94 6.67 -2.39 -0.02 1.93 16 33 H 0.08 3.72 6.29 -2.39 -0.02 3.70 16 Total: -1.00 -60.43 249.99 4.93 -55.50 By element: Atomic # 1 Polarization: 5.67 SS G_CDS: 1.07 Total: 6.74 kcal Atomic # 6 Polarization: -42.04 SS G_CDS: 2.56 Total: -39.48 kcal Atomic # 7 Polarization: -53.73 SS G_CDS: 0.24 Total: -53.49 kcal Atomic # 8 Polarization: -14.92 SS G_CDS: -0.96 Total: -15.88 kcal Atomic # 14 Polarization: 44.59 SS G_CDS: 2.03 Total: 46.61 kcal Total: -60.43 4.93 -55.50 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260339943.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.606 kcal (2) G-P(sol) polarization free energy of solvation -60.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.933 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.498 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds